Team:UCSC/Part Collection



PARTS



BBa_k2223000: 4abh


The 4abh gene, native to A. bisporus, allows the conversion of molecules like anthranilate and para-aminobenzoic acid to 4-aminophenol.



BBa_k2223001: nhoA


The nhoA gene is native to E. coli and allows for the conversion of 4-aminophenol to acetaminophen.



BBa_k2223002: ssuE


The enzyme created by the gene ssuE catalyzes activity that reduces the Flavin mononucleotide (FMN) by using NADH dehydrogenase as a reducing agent. This gene sequenced was optimized from S. elonagtus PCC 7002 sequence.



BBa_k2223003: bluB


The gene bluB encodes an enzyme that catalyzes an oxidized reaction that cleaves the reduced Flavin mononucleotide (FMNH2) transforming to 5,6-dimethylbenzimidazole (5,6-DMB). The bluB sequence was optimized for PCC 7942 using the reference genome sequence from Sinorhizobium meliloti 1021.



BBa_k2223004: riboswitch


The riboswitch part contains a psbAI promoter which transcribes an mRNA strand consisting of a riboswitch and repressor gene, TetR. The riboswitch binds to vitamin B12 and regulates the expression of the downstream repressor gene. In the presence of vitamin B12, the riboswitch specifically anneals onto the cobalamin molecule inducing a conformational change within the mRNA sequestering the riboswitch binding site upstream of TetR. However, in the absence of vitamin B12, TetR is continuously expressed.


A light-induced psbAI (Part: BBa_K1913011) promoter, documented to be constitutively expressed in cyanobacteria such as S. elongatus PCC 7942, was modified at the -10 element for expression in E. coli. The promoter was placed upstream of the biobrick parts, producing two separate mRNA strands. The reporter for this part is in BBa_K2223005.



BBa_k2223005: riboswitch_reporter


The riboswitch_reporter part contains a psbAI promoter which transcribes an mRNA strand consisting of a Tet operator, TetO, upstream of the reporter gene, mRFP. The reporter is trans-regulated by a Tet repressor protein bound to the Tet operator hindering translation. In the presence of vitamin B12 the Tet systems renders useless thus, mRFP is expressed.


A light-induced psbAI (Part:BBa_K1913011) promoter, documented to be constitutively expressed in cyanobacteria such as S. elongatus PCC 7942, was modified at the -10 element for expression in E. coli. The promoter was placed upstream of the biobrick parts, producing two separate mRNA strands. The riboswitch paired with this reporter is BBa_K2223004.