Template:CLSB-UK Model NUPACK Diagrams

View structures of toehold switch for miRNA:


RBSStart codonTriggerBindingSiteFree energy of secondary structure: -26.40 kcal/molMFE structure at 37.0°CACGUTriggerBindingSitemiRNAStart codonRBSFree energy of secondary structure: -43.98 kcal/molMFE structure at 37.0°CACGU
Start codonRBSTriggerBindingSiteFree energy of secondary structure: -18.80 kcal/molMFE structure at 37.0°CACGUTriggerBindingSitemiRNAStartcodonRBSFree energy of secondary structure: -46.98 kcal/molMFE structure at 37.0°CACGU
anti-miRNAmiRNAFree energy of secondary structure: -18.57 kcal/molMFE structure at 35.0°CACGU Free energy of secondary structure: -15.27 kcal/molMFE structure at 35.0°CACGUTrigger Binding SiteStart CodonRBS Free energy of secondary structure: -68.61 kcal/molMFE structure at 35.0°CACGUStart CodonTrigger Binding Siteanti-miRNAmiRNARBS
anti-miRNAmiRNAFree energy of secondary structure: -21.70 kcal/molMFE structure at 35.0°CACGU RBSStart codonTriggerBindingSiteFree energy of secondary structure: -14.08 kcal/molMFE structure at 35.0°CACGU anti-miRNAmiRNATriggersitebindingRBSStartcodonFree energy of secondary structure: -72.09 kcal/molMFE structure at 35.0°CACGU

Base diagrams created in NUPACK, highlighted regions of interest by us.