Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateTue Oct 3 16:16:01 BST 2017
Rank37Aligned Residues210
% Identity25%Templatec3vhtB_
PDB info PDB header:fluorescent protein/protein bindingChain: B: PDB Molecule:green fluorescent protein,atpase wrnip1; PDBTitle: crystal structure of gfp-wrnip1 ubz domain fusion protein in complex2 with ubiquitin
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  SVIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTVTKGGPLPFAWDILSPQC
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Template Sequence  ELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTG. KLPVPWPTL. . . V
Template Known Secondary structure  GGGSS
TTTTTTTTS.S
SS
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   6...10.........20.........30.........40.........50. ........60 .
 
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Query Sequence  QYGSIPFTKYPEDI. . PDYVKQSFPEGYTWERIMNFEDGAVCTVSNDSSIQGNCFIYHVK
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Template Sequence  TTFVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIE
Template Known Secondary structure  TT

GGGSB

GGGGGG
TTTT
TTS
TT
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   62.......70.........80.........90.........100.........110.........120.
 
   120.........130.........140.. .......150. ........160.........170... .
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Query Sequence  FSGLNFPPNGPVMQKKTQGWEPN. TERLFARDG. . MLLGNNFMALKLEGGGHYLCEF. . K
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Template Sequence  LKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQ
Template Known Secondary structure  S

TTSTTTTT
B
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GGGTBTTS
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   125....130.........140.........150.........160.........170.........180....
 
   175....180.........190....... ..200.........210.....
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Query Sequence  TTYKAKKPVKMPGYHYVDRKLDV. . . TNHNKDYTSVEQCEISIA
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Template Sequence  NTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAG
Template Known Secondary structure  SS
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S

TT

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   185....190.........200.........210.........220........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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