Phyre Home Retrieve Phyre Job Id
Emaillhernould.t@gmail.com
DescriptionUndefined
DateTue Oct 3 16:16:01 BST 2017
Unique Job ID77875f97c8c9be27
SequenceMSVIAKQMTY ... Download FASTA
Job Typeintensive
Job Expiry

Final Model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.164 Y:47.198 Z:44.805
Confidence Summary
1 







































































































































































































 200
201 




















Confidence Key
High(9)                    Low (0)
 
98% of residues modelled at >90% confidence (Details)
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1moua_



100.0 95
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
2d1ggxa_



100.0 67
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
3c3nezB_



100.0 61
PDB header:fluorescent protein
Chain: B: PDB Molecule:mrojoa;
PDBTitle: mrojoa
4c3nezA_



100.0 61
PDB header:fluorescent protein
Chain: A: PDB Molecule:mrojoa;
PDBTitle: mrojoa
5c2otbB_



100.0 55
PDB header:fluorescent protein
Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484;
PDBTitle: crystal structure of a monomeric cyan fluorescent protein in the2 fluorescent state
6c2ddcA_



100.0 55
PDB header:luminescent protein
Chain: A: PDB Molecule:photoconvertible fluorescent protein;
PDBTitle: unique behavior of a histidine responsible for an engineered green-to-2 red photoconversion process
7c2z6zA_



100.0 57
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent protein dronpa;
PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state
8d1xqma_



100.0 48
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
9c2ib5H_



100.0 50
PDB header:luminescent protein
Chain: H: PDB Molecule:chromo protein;
PDBTitle: structural characterization of a blue chromoprotein and its yellow2 mutant from the sea anemone cnidopus japonicus
10c2c9iG_



100.0 49
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein asfp499;
PDBTitle: structure of the fluorescent protein asfp499 from anemonia2 sulcata
11d1uisa_



100.0 50
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
12c4ohsB_



100.0 50
PDB header:fluorescent protein
Chain: B: PDB Molecule:far-red fluorescent protein aq143;
PDBTitle: the structure of a far-red fluorescent protein, aq143
13c3cglE_



100.0 60
PDB header:fluorescent protein
Chain: E: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483;
PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata
14c2c9jG_



100.0 39
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein fp512;
PDBTitle: structure of the fluorescent protein cmfp512 at 1.35a from2 cerianthus membranaceus
15c2zo6A_



100.0 48
PDB header:luminescent protein
Chain: A: PDB Molecule:cyan-emitting gfp-like protein, kusabira-cyan (kcy);
PDBTitle: crystal structure of kusabira-cyan (kcy), a cyan-emitting gfp-like2 protein
16c2zo7A_



100.0 49
PDB header:luminescent protein
Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant
PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein
17c2zmwC_



100.0 53
PDB header:luminescent protein
Chain: C: PDB Molecule:fluorescent protein;
PDBTitle: crystal structure of monomeric kusabira-orange (mko), orange-emitting2 gfp-like protein, at ph 6.0
18c1yzwB_



100.0 50
PDB header:luminescent protein
Chain: B: PDB Molecule:gfp-like non-fluorescent chromoprotein;
PDBTitle: the 2.1a crystal structure of the far-red fluorescent2 protein hcred: inherent conformational flexibility of the3 chromophore
19c2a48A_



100.0 48
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like fluorescent chromoprotein amfp486;
PDBTitle: crystal structure of amfp486 e150q
20d2rh7a1



100.0 42
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
21c3gb3B_



not modelled 100.0 25
PDB header:fluorescent protein
Chain: B: PDB Molecule:killerred;
PDBTitle: x-ray structure of genetically encoded photosensitizer2 killerred in native form
22c2icrD_



not modelled 100.0 44
PDB header:fluorescent protein
Chain: D: PDB Molecule:red fluorescent protein zoanrfp;
PDBTitle: red fluorescent protein zrfp574 from zoanthus sp.
23c4jeoB_



not modelled 100.0 29
PDB header:fluorescent protein
Chain: B: PDB Molecule:red fluorescent protein blfp-r5;
PDBTitle: crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation
24c5ltrA_



not modelled 100.0 27
PDB header:fluorescent protein
Chain: A: PDB Molecule:mneongreen;
PDBTitle: structure of the yellow-green fluorescent protein mneongreen from2 branchiostoma lanceolatum at the near physiological ph 8.0
25d1h6ra_



not modelled 100.0 25
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
26c2g3oB_



not modelled 100.0 27
PDB header:luminescent protein
Chain: B: PDB Molecule:green fluorescent protein 2;
PDBTitle: the 2.1a crystal structure of copgfp
27c2dd9C_



not modelled 100.0 26
PDB header:luminescent protein
Chain: C: PDB Molecule:green fluorescent protein;
PDBTitle: a mutant of gfp-like protein from chiridius poppei
28d1kp5a_



not modelled 100.0 25
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
29c4dkmH_



not modelled 100.0 26
PDB header:fluorescent protein
Chain: H: PDB Molecule:amphioxus green fluorescent protein, gfpc1a;
PDBTitle: crystal structure of amphioxus gfpc1a
30c4he4A_



not modelled 100.0 24
PDB header:fluorescent protein
Chain: A: PDB Molecule:yellow fluorescent protein;
PDBTitle: crystal structure of the yellow fluorescent protein phiyfp (phialidium2 sp.)
31d1oxda_



not modelled 100.0 24
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
32d1mywa_



not modelled 100.0 25
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
33c4dknB_



not modelled 100.0 26
PDB header:fluorescent protein
Chain: B: PDB Molecule:amphioxus green fluorescent protein, gfpa1;
PDBTitle: crystal structure of amphioxus green fluorescent protein, gfpa1
34c2hpwA_



not modelled 100.0 24
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: green fluorescent protein from clytia gregaria
35c3ai4A_



not modelled 100.0 24
PDB header:fluorescent protein, replication
Chain: A: PDB Molecule:yeast enhanced green fluorescent protein,dna polymerase
PDBTitle: crystal structure of yeast enhanced green fluorescent protein - mouse2 polymerase iota ubiquitin binding motif fusion protein
36c4xbiA_



not modelled 100.0 26
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
37c3vhtB_



not modelled 100.0 25
PDB header:fluorescent protein/protein binding
Chain: B: PDB Molecule:green fluorescent protein,atpase wrnip1;
PDBTitle: crystal structure of gfp-wrnip1 ubz domain fusion protein in complex2 with ubiquitin
38c4ndkA_



not modelled 100.0 24
PDB header:fluorescent protein, de novo protein
Chain: A: PDB Molecule:e23p-yfp, chimeric construct,gfp-like fluorescent
PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
39c5j3nA_



not modelled 100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:green fluorescent protein,hsdr;
PDBTitle: c-terminal domain of ecor124i hsdr subunit fused with the ph-sensitive2 gfp variant ratiometric phluorin
40c3rwaE_



not modelled 100.0 55
PDB header:fluorescent protein
Chain: E: PDB Molecule:fluorescent protein fp480;
PDBTitle: crystal structure of circular-permutated mkate
41c4p7hB_



not modelled 100.0 26
PDB header:motor/fluorescent protein
Chain: B: PDB Molecule:myosin-7,green fluorescent protein;
PDBTitle: structure of human beta-cardiac myosin motor domain::gfp chimera
42c4jrbA_



not modelled 100.0 24
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
43c2jadA_



not modelled 100.0 25
PDB header:electron transport
Chain: A: PDB Molecule:yellow fluorescent protein glutaredoxin fusion protein;
PDBTitle: yellow fluorescent protein - glutaredoxin fusion protein
44c4pfeB_



not modelled 100.0 25
PDB header:fluorescent protein
Chain: B: PDB Molecule:green fluorescent protein;
PDBTitle: crystal structure of vsfgfp-0
45c5fguA_



not modelled 100.0 24
PDB header:metal binding, dna binding protein
Chain: A: PDB Molecule:green fluorescent protein,extracellular streptodornase d;
PDBTitle: structure of sda1 nuclease apoprotein as an egfp fixed-arm fusion
46c3ai5A_



not modelled 100.0 26
PDB header:fluorescent protein, transcription
Chain: A: PDB Molecule:yeast enhanced green fluorescent protein,ubiquitin;
PDBTitle: crystal structure of yeast enhanced green fluorescent protein-2 ubiquitin fusion protein
47c4bduC_



not modelled 100.0 24
PDB header:apoptosis
Chain: C: PDB Molecule:green fluorescent protein, apoptosis regulator bax;
PDBTitle: bax bh3-in-groove dimer (gfp)
48c4anjA_



not modelled 100.0 25
PDB header:motor protein/metal-bindng protein
Chain: A: PDB Molecule:unconventional myosin-vi, green fluorescent protein;
PDBTitle: myosin vi (mdinsert2-gfp fusion) pre-powerstroke state (mg.adp.alf4)
49c4oy4A_



not modelled 100.0 55
PDB header:calcium binding, fluorescent, transferas
Chain: A: PDB Molecule:chimera protein of calmodulin, gpf-like protein eosfp, and
PDBTitle: calcium-free campari v0.2
50c4i2yB_



not modelled 100.0 61
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
51c3lf4B_



not modelled 100.0 60
PDB header:fluorescent protein
Chain: B: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
52c3u0kA_



not modelled 100.0 54
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
53c2gw4D_



not modelled 100.0 53
PDB header:luminescent protein
Chain: D: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
54c3u8pB_



not modelled 100.0 26
PDB header:fluorescent protein, electron transport
Chain: B: PDB Molecule:cytochrome b562 integral fusion with enhanced green
PDBTitle: cytochrome b562 integral fusion with egfp
55c3cfhB_



not modelled 100.0 50
PDB header:fluorescent protein
Chain: B: PDB Molecule:gfp-like photoswitchable fluorescent protein;
PDBTitle: photoswitchable red fluorescent protein psrfp, off-state
56c3akoG_



not modelled 100.0 29
PDB header:fluorescent protein
Chain: G: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
57c2g3dB_



not modelled 100.0 21
PDB header:luminescent protein
Chain: B: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65g y66a gfp variant after spontaneous2 peptide hydrolysis
58c3evpA_



not modelled 100.0 30
PDB header:signaling protein
Chain: A: PDB Molecule:green fluorescent protein,green fluorescent protein;
PDBTitle: crystal structure of circular-permutated egfp
59c3evrA_



not modelled 100.0 31
PDB header:signaling protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: crystal structure of calcium bound monomeric gcamp2
60c3osrA_



not modelled 100.0 29
PDB header:fluorescent protein, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,green fluorescent
PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311
61c3lf4A_



not modelled 100.0 69
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
62c2gw4C_



not modelled 100.0 55
PDB header:luminescent protein
Chain: C: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
63c2a56A_



not modelled 99.9 52
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like non-fluorescent chromoprotein fp595 chain 1;
PDBTitle: fluorescent protein asfp595, a143s, on-state, 5min irradiation
64c3ek7A_



not modelled 99.9 27
PDB header:fluorescent protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: calcium-saturated gcamp2 dimer
65c3osqA_



not modelled 99.7 31
PDB header:fluorescent protein, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,green fluorescent
PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175
66c2g16A_



not modelled 99.6 36
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation
67c3cglF_



not modelled 98.4 81
PDB header:fluorescent protein
Chain: F: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483;
PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata
68c3akoH_



not modelled 97.2 19
PDB header:fluorescent protein
Chain: H: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
69c4jg9B_



not modelled 74.2 15
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein;
PDBTitle: x-ray crystal structure of a putative lipoprotein from bacillus2 anthracis
70d1tywa_



not modelled 70.4 21
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:P22 tailspike protein
71c2xc1A_



not modelled 67.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:bifunctional tail protein;
PDBTitle: full-length tailspike protein mutant y108w of bacteriophage p22
72c3riqA_



not modelled 41.4 13
PDB header:viral protein
Chain: A: PDB Molecule:tailspike protein;
PDBTitle: siphovirus 9na tailspike receptor binding domain
73c4r8oB_



not modelled 36.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3836 family protein (bvu_1206) from2 bacteroides vulgatus atcc 8482 at 2.50 a resolution
74c4r03A_



not modelled 34.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3836 family protein (bdi_3222) from2 parabacteroides distasonis atcc 8503 at 1.50 a resolution
75c2k6zA_



not modelled 32.2 24
PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
76d1u1sa1



not modelled 30.4 17
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Pleiotropic translational regulator Hfq
77c2k4vA_



not modelled 30.0 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1076;
PDBTitle: solution structure of uncharacterized protein pa1076 from pseudomonas2 aeruginosa. northeast structural genomics consortium (nesg) target3 pat3, ontario center for structural proteomics target pa1076 .
78c3zk0A_



not modelled 29.3 17
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
79c3dkxA_



not modelled 26.9 30
PDB header:replication
Chain: A: PDB Molecule:replication protein repb;
PDBTitle: crystal structure of the replication initiator protein2 encoded on plasmid pmv158 (repb), trigonal form, to 2.7 ang3 resolution
80c3u1wB_



not modelled 26.4 9
PDB header:metal binding protein
Chain: B: PDB Molecule:hypothetical periplasmic protein;
PDBTitle: crystal structure of a calcium binding protein (bdi_1975) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution
81c4iajC_



not modelled 25.7 31
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved domain protein;
PDBTitle: crystal structure of a conserved domain protein (sp_1775) from2 streptococcus pneumoniae tigr4 at 1.91 a resolution
82c2ldmA_



not modelled 23.1 17
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
83c2v5iA_



not modelled 22.9 16
PDB header:viral protein
Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7
PDBTitle: structure of the receptor-binding protein of bacteriophage2 det7: a podoviral tailspike in a myovirus
84d1gwma_



not modelled 22.3 30
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 29 carbohydrate binding module, CBM29
85d1w36b3



not modelled 21.6 26
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
86d1x9la_



not modelled 21.0 21
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
87d1hdmb2



not modelled 17.7 11
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
88c3qiiA_



not modelled 16.8 17
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
89c2kqdA_



not modelled 16.6 25
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: first pbz domain of human aplf protein in complex with2 ribofuranosyladenosine
90c2xetB_



not modelled 16.2 29
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
91d2cbra_



not modelled 16.2 7
Fold:Lipocalins
Superfamily:Lipocalins
Family:Fatty acid binding protein-like
92c4pqxC_



not modelled 15.5 21
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a nigd-like protein (baccac_02139) from2 bacteroides caccae atcc 43185 at 2.39 a resolution
93c3dvkB_



not modelled 14.3 75
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-dependent r-type calcium channel subunit alpha-1e;
PDBTitle: crystal structure of ca2+/cam-cav2.3 iq domain complex
94c2equA_



not modelled 14.1 11
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
95d1k8ib2



not modelled 13.9 11
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
96c3bxlB_



not modelled 13.1 75
PDB header:membrane protein, signaling protein
Chain: B: PDB Molecule:voltage-dependent r-type calcium channel subunit
PDBTitle: crystal structure of the r-type calcium channel (cav2.3) iq2 domain and ca2+calmodulin complex
97d2bjra2



not modelled 12.6 23
Fold:MFPT repeat-like
Superfamily:MFPT repeat-like
Family:MFPT repeat
98c3mp6A_



not modelled 12.2 21
PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,linker,saga-associated
PDBTitle: complex structure of sgf29 and dimethylated h3k4
99d1igqa_



not modelled 12.1 45
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB

Binding site prediction 

The final model of your protein (98% modelled at >90% confidence) has been submitted to the 3DLigandSite server to predict potential binding sites.

Results will appear here when complete

Multi-template and ab initio information 

1 template was selected to model your protein based on heuristics to maximise confidence, percentage identity and alignment coverage. Below is a table indicating where your sequence was covered by each template, colour-coded by the confidence of the match to that template overall.

4 residues were modelled by ab initio. Please note: ab initio modelling is highly unreliable.

 
TemplateConfidence1....................................................................................................
d1moua_100% 
                                                               


                                 
 
TemplateConfidence101....................................................................................................
d1moua_100%                                                                                                     
 
TemplateConfidence201.....................
d1moua_100%