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Job DescriptionUndefined
Confidence100.00%DateTue Oct 3 16:16:01 BST 2017
Rank54Aligned Residues206
% Identity26%Templatec3u8pB_
PDB info PDB header:fluorescent protein, electron transportChain: B: PDB Molecule:cytochrome b562 integral fusion with enhanced green PDBTitle: cytochrome b562 integral fusion with egfp
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30....
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Query Sequence  VIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPY. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LFTGVVPILVELDGDVNGHKFSVSGEGEGDATFGGSADLEDNMETLNDNLKVIEKADNAA
Template Known Secondary structure  GGSS
TT


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   7..10.........20.........30.........40.........50.........60......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKV
Template Known Secondary structure  TTS

GGGGGS
TTSTT
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   67..70.........80.........90.........100.........110.........120......
 
   35....40.........50.........60.........70..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . EGEQTVKLTVTKGGPLPFAWDILSPQCQYGSIPFTKYP
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Template Sequence  KEAQAAAEQLKTTRNAYHQKYRGGKLTLKFICTTG. KLPVPWPTLVTTLV. . . QCFSRYP
Template Known Secondary structure  T
SSTTS.S
SS
GGGGTTT

...GGGSB

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   127..130.........140.........150.........160. ........170..... ....180..
 
   73... ...80.........90.........100.........110.........120.........130
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Query Sequence  EDIP. . DYVKQSFPEGYTWERIMNFEDGAVCTVSNDSSIQGNCFIYHVKFSGLNFPPNGP
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Template Sequence  DHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN
Template Known Secondary structure  GGGGGG
TTTT
TTS
TTS

SSST
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   184.....190.........200.........210.........220.........230.........240...
 
   131........140....... ..150.........160.........170... ......180....
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Query Sequence  VMQKKTQGWEPNTERLF. . . . ARDGMLLGNNFMALKLEGGGHYLCEF. . KTTYKAKKPVK
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Template Sequence  ILGHK. LEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVL
Template Known Secondary structure  TTTT
.B
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GGGTBTTS
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   244.... .250.........260.........270.........280.........290.........300..
 
   185....190........ .200.........210...
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Query Sequence  MPGYHYVDRKLDVT. . . NHNKDYTSVEQCEIS
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Template Sequence  LPDNHYLSTQSALSKDPNEKRDHMVLLEFVTA
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   303......310.........320.........330....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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