Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateTue Oct 3 16:16:01 BST 2017
Rank33Aligned Residues200
% Identity26%Templatec4dknB_
PDB info PDB header:fluorescent proteinChain: B: PDB Molecule:amphioxus green fluorescent protein, gfpa1; PDBTitle: crystal structure of amphioxus green fluorescent protein, gfpa1
Resolution1.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60........
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Query Sequence  TYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTVTKGGPLPFAWDILSPQCQYGSIPF
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Template Sequence  THDIHLHGSINGHEFDMVGGGKGDPNAGSLVTTAKSTKG. ALKFSPYLMIPHLYYQ. . . Y
Template Known Secondary structure  TTTTTTSSS.S
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GGGGTTT

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   6...10.........20.........30.........40.... .....50.........60 .
 
   6970.........80... ......90.........100.........110.........120.......
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Query Sequence  TKYPEDIPDYVKQSF. PEGYTWERIMNFEDGAVCTVSNDSSIQGNCFIYHVKFSGLNFPP
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Template Sequence  LPYPDGPSPFQVSMLEGSGYAVYRVFDFEDGGKLSTEFKYSYEGSHIKADMKLMGSGFPD
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   65....70.........80.........90.........100.........110.........120....
 
   128.130.........140...... ...150.........160.........170.........180...
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Query Sequence  NGPVMQKKTQGWEPNTERL. FARDGMLLGNNFMALKLEGGGHYLCEFKTTYKAKKPV. . .
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Template Sequence  DGPVMTSQIVDQDGCVSKKTYLNNNTIVDSFDWSYNLQNGKRYRARVSSHYIFDKPFSAD
Template Known Secondary structure  TSTTTTT


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   125....130.........140.........150.........160.........170.........180....
 
   184.....190.........200.........210.....
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Query Sequence  . . . KMPGYHYVDRKLDVTNHNKDYTSVEQCEISIA
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Template Sequence  LMKKQPVFVYRKCHV. . . KATKTEVTLDEREKAFY
Template Known Secondary structure  GGGS

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   185....190......... 200.........210......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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