Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateTue Oct 3 16:16:01 BST 2017
Rank38Aligned Residues209
% Identity24%Templatec4ndkA_
PDB info PDB header:fluorescent protein, de novo proteinChain: A: PDB Molecule:e23p-yfp, chimeric construct,gfp-like fluorescent PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  VIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTVTKGGPLPFAWDILSPQCQ
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Template Sequence  LFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKLICTTG. KLPVPFPTLVTTLL
Template Known Secondary structure  TSS
TTGGGTTTS.S
SS
GGGGTTT

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   60.........70.........80.........90.........100.... .....110........
 
   63......70...... ...80.........90.........100.........110.........120
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Query Sequence  YGSIPFTKYPEDIP. . DYVKQSFPEGYTWERIMNFEDGAVCTVSNDSSIQGNCFIYHVKF
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Template Sequence  QC. . . FARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIEL
Template Known Secondary structure  GG...G
B

GGGGGG
TTTT
TTS
TT
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   122. ......130.........140.........150.........160.........170........
 
   121........130.........140....... ..150.........160.........170.......
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Query Sequence  SGLNFPPNGPVMQKKTQGWEPNTERLF. . . ARDGMLLGNNFMALKLEGGGHYLCEFKTTY
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Template Sequence  KGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGGVQLADHYQQN
Template Known Secondary structure  S

TTSTTTTT
B
S



GGGTBTTS
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   179180.........190.........200.........210.........220.........230........
 
   178 .180.........190........ .200.........210.....
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Query Sequence  K. . AKKPVKMPGYHYVDRKLDVT. . . NHNKDYTSVEQCEISIA
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Template Sequence  TPIGDGPVLLPDNHYLSYQSKLSKDPNEKRDHMVLLEFVTAAG
Template Known Secondary structure  SSSS





S

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   239240.........250.........260.........270.........280.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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