Return to main results Retrieve Phyre Job Id

Job DescriptionUndefined
Confidence100.00%DateTue Oct 3 16:16:01 BST 2017
Rank35Aligned Residues209
% Identity24%Templatec3ai4A_
PDB info PDB header:fluorescent protein, replicationChain: A: PDB Molecule:yeast enhanced green fluorescent protein,dna polymerase PDBTitle: crystal structure of yeast enhanced green fluorescent protein - mouse2 polymerase iota ubiquitin binding motif fusion protein
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  VIAKQMTYKVYMSGTVNGHYFEVEGDGKGKPYEGEQTVKLTVTKGGPLPFAWDILSPQCQ
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Template Sequence  LFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTG. KLPVPWPTLVT. . .
Template Known Secondary structure  GGSSTTTTTTTTS.S
SS
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   7..10.........20.........30.........40.........50. ........60..
 
   63......70...... ...80.........90.........100.........110.........120
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Query Sequence  YGSIPFTKYPEDIP. . DYVKQSFPEGYTWERIMNFEDGAVCTVSNDSSIQGNCFIYHVKF
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Template Sequence  TFVQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIEL
Template Known Secondary structure  T

GGG
B

GGGGGG
TTTT
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   63......70.........80.........90.........100.........110.........120..
 
   121........130.........140.........150.........160.........170.........180
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Query Sequence  SGLNFPPNGPVMQKKTQGWEPNTERLFARDGMLLGNNFMALKLEGGGHYLCEFKTTYKAK
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Template Sequence  KGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQN
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TTSTTTTT
B
S



GGGTBTTS
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   126...130.........140.........150.........160.........170.........180.....
 
   181. .......190........ .200.........210.....
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Query Sequence  KP. . . . . VKMPGYHYVDRKLDVT. NHNKDYTSVEQCEISIA
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Template Sequence  TPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTA
Template Known Secondary structure  SSSS





S

TT

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   186...190.........200.........210.........220......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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