Difference between revisions of "Team:SDU-Denmark/Attributions"

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<h3>★  ALERT! </h3>
 
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<p>This page is used by the judges to evaluate your team for the <a href="https://2017.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2017.igem.org/Judging/Awards"> award listed above</a>. </p>
 
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2017.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
 
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<h1>Attributions</h1>
 
  
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<p> Each team must clearly attribute work done by the student team members on this page. The team must distinguish work done by the students from work done by others, including the host labs, advisors, instructors, and individuals not on the team roster.
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This is a bronze medal requirement. Please see the <a href="https://2017.igem.org/Judging/Medals">Medals requirements page</a> for more details.</p>
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<h5> Why is this page needed? </h5>
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<p>The Attribution requirement helps the judges know what you did yourselves and what you had help with. We don't mind if you get help with difficult or complex techniques, but you must report what work your team did and what work was done by others.</p>
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For example, you might choose to work with an animal model during your project. Working with animals requires getting a license and applying far in advance to conduct certain experiments in many countries. This is difficult to achieve during the course of a summer, but much easier if you can work with a postdoc or PI who has the right licenses.</p>
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            <h2>Attributions</h2><hr>
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            <p>Nothing can be done alone, so please scroll further to read about the contributors, who helped make this project a reality.</p>
 +
      </div>
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      <div class="row"><div class="col-xs-12"><div id="attributionsCoverPicture" class="coverPicture">sweet picture of supervisors being all happy and stuff</div></div></div>
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    <p class="P-Larger"><b>Laboratory, Technical and General support</b></p><br class="shortBreak">
 +
      <p>We would like to give special thanks to our supervisors:</p>
 +
      <ul class="list">
 +
        <li>Assistant professor <strong>Mikkel Girke Jørgensen</strong>, for his general support and advice on development of the project, the laboratory, fundraising and team synergy.</li>
 +
        <li>Ph.D. student and former iGEM participant <strong>Patrick Rosendahl Andreassen</strong>, for his guidance and technical assistance in the laboratory.</li>
 +
        <li>Ph.D student and former iGEM participant <strong>Thøger Jensen Krogh</strong>, for his help in developing the wiki, as well as his laboratory guidance.</li>
 +
        <li>Cand.phil student and former iGEM participant <strong>Tim Munk</strong>, for his focus on team dynamics and advice for our human practices.</li>
 +
      </ul>
 +
<br class="noContent">
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<br class="noContent">
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      <p>Thanks to:</p>
 +
      <ul class="list">
 +
        <li>Academic assistant <strong>Tina Kronborg</strong> for guidance in the lab and for providing us with lab equipment.</li>
 +
        <li>Medical Laboratory Technician, <strong>Simon Rose</strong>, for giving us a course in security and lab safety.</li>
 +
        <li>Postdoc <strong>Oona Sneoyenbos-West</strong> provided us with Geobacter sulfurreducens PCA and knowledge, on growing this bacterial strain. As well as lending, us her laboratory for culturing of the Geobacter sulfurreducens PCA.</li>
 +
        <li>Business scout and PhD <strong>Ann Zahle Andersen</strong> presented tools to us for the development of innovative business ideas.</li>
 +
        <li>Stud.scient <strong>Kristian Severin Rasmussen</strong> helped us using the oCelleScope for testing.</li>
 +
        <li>Stud.scient and former iGEM participant <strong>Brian Baltzar</strong> for hosting a workshop about graphical representation in Adobe Illustrator.</li>
 +
        <li>Title <strong>Jonas Hartwig</strong> for helping with some JQuery functionality on the wiki.</li>
 +
        <li>Stud.scient <strong>Birka Jensen</strong>, for advice on how to build an iGEM wiki.</li>
 +
        <li>Stud.med <strong>Ida Charlotte Hvam</strong> for helpful discussions on development of the wiki.</li>
 +
        <li>Ph.D student and current iGEM advisor of the team from Bielefeld, <strong>Boas Pucker</strong> has provided us with BioBricks created by former iGEM teams from Bielefeld.</li>
 +
        <li>Dem fra Imperial?</li>
 +
        <li>Stud.polyt <strong>Oliver Klinggaard</strong>, for helpful discussions on the implementation of a pan-tilt system and for providing os with his project report on the subject.</li>
 +
        <li><strong>DTU BioBuilders</strong> hosted their 5th Annual Biobrick Workshop.</li>
 +
        <li>The <strong>UNIK Copenhagen iGEM team</strong> hosted the Nordic Meetup.</li>
 +
        <li>The <strong>TU-Delft iGEM team</strong> for hosting the European Meetup.</li>
 +
        <li><strong>The Danish Science Festival</strong> for having us at their annual event.</li>
 +
        <li><strong>Mimo Antabi</strong> for adding our adverts to the university screens preceding the Danish Research Festival.</li>
 +
        <li><strong>Allan Haurballe Madsen</strong> for the practical help associated with our appearance at the Danish Science Festival.</li>
 +
        <li><strong>Lise Junker Nielsen</strong> for practical help associated with the Danish Science Festival and visit from the Academy for Talented Youth. As well as lending us iPads for laboratory use.</li>
 +
        <li><strong>The Danish Science Festival</strong> for having us and to all the visitors attending our booth.</li>
 +
        <li>Dem der hjælper os med SDU-Meetup hvis nogen</li>
 +
        <li>Colombia til modelling</li>
 +
        <li>The high schools that we visited and presented our iGEM project at. These include <strong>Odense Technical gymnasium</strong>, <strong>Mulernes Legatskole</strong> and <strong>Academy for Talented Youth</strong>.</li>
 +
        <li>The <strong>UNF Camp</strong> for having us present our project to the students attending.</li>
 +
        <li>The elementary schools:</li>
 +
        <li><strong>All former iGEM participants from SDU</strong>, attending our preliminary presentation and giving us feedback before the Giant Jamboree.</li>
 +
        <li>The following groups and associations, for helping us develop our human practices: (SP-Moulding, Borgernes Hus, Kommunens bygninger, Bolbro - områdefornyelse, Odense Byudvikling)</li>
 +
        <li>Matlab user <strong>Nezar</strong> for an easy implementation of the gillespie algorithm into matlab.</li>
 +
        <li>empty spot</li>
 +
      </ul>
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    <p class="P-Larger"><b>Sponsors</b></p><br class="shortBreak">
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<h5> What should this page have?</h5>
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      <p>Thanks to:</p>
 +
      <ul class="list">
 +
        <li>The <strong>Faculty of Science</strong> at <strong>University Southern Denmark</strong> for providing us with fundamental funds which have been required to make our project possible, and for providing lab benches and equipment.</li>
 +
        <li>The <strong>Faculty of Health Sciences</strong> at <strong>University of Southern Denmark</strong> for providing us with important funds to our project.</li>
 +
        <li><strong>Integrated DNA Technologies</strong> for providing us with 20 kilobases of gBlock gene fragments.</li>
 +
        <li><strong>SnapGene</strong> for providing our team with memberships to their software during the competition.</li>
 +
        <li><strong>PentaBase</strong> for sponsoring us with 10.000 DKK worth of oligos and a further 10% discount.</li>
 +
        <li><strong>Eurofins Genomics</strong> for providing us with an 80% discount on a Mix2Seq kit.</li>
 +
      </ul>
  
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<li>General Support</li>
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<div class="col-xs-4"><img src="https://static.igem.org/mediawiki/2017/1/1a/T--SDU-Denmark--pentabase_logo.png" style="margin-bottom: 20px;" width="90%">
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<li>Project support and advice</li>
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<img src="https://static.igem.org/mediawiki/2017/7/7f/T--SDU-Denmark--idt_logo.png" style="margin-bottom: 20px;" width="90%"></div>
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<li>Fundraising help and advice</li>
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<div class="col-xs-4"><img src="https://static.igem.org/mediawiki/2017/e/e8/T--SDU-Denmark--SDU_logo.png" style="margin-bottom: 40px; margin-top:10px;" width="90%">
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<li>Lab support</li>
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<img src="https://static.igem.org/mediawiki/2017/2/26/T--SDU-Denmark--eurofins_logo.png" style="margin-bottom: 20px;" width="90%"></div>
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<li>Difficult technique support</li>
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<div class="col-xs-4"><img src="https://static.igem.org/mediawiki/2017/b/b4/T--SDU-Denmark--snapgene_logo.png" style="margin-top: 20px;" width="90%"></div>
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<li>Project advisor support</li>
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<li>Wiki support</li>
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<li>Presentation coaching</li>
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<li>Human Practices support</li>
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<li> Thanks and acknowledgements for all other people involved in helping make a successful iGEM team</li>
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</ul>
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<br class="noContent">
  
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    <p class="P-Larger"><b>Litterature</b></p><br class="shortBreak">
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      <p>Lots of nice <span class="btn-link btn-lg" data-toggle="modal" data-target="#articles">articles</span> and books<span class="reference"><span class="referencetext"><a target="blank" href="https://www.ncbi.nlm.nih.gov/pubmed/25093938">Akimov V, Henningsen J, Hallenborg P, Rigbolt KT, Jensen SS, Nielsen MM, Kratchmarova I, Blagoev B. StUbEx: Stable tagged ubiquitin exchange system for the global inves tigation of cellular ubiquitination. Journal of proteome res earch. 2014;13(9):4192-204.</a></span></span>.</p>
  
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<h2 class="modal-title">Articles</h2>
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                                                    <p> Vestergaard P, Rejnmark L, Mosekilde L. Osteoporosis is markedly underdiagnosed: a nationwide study from Denmark. Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA. 2005;16(2):134-41.</p>
 +
                                                  <p> Vestergaard P, Rejnmark L, Mosekilde L. Osteoporosis is markedly underdiagnosed: a nationwide study from Denmark. Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA. 2005;16(2):134-41.</p>
 +
                                                  <p> Vestergaard P, Rejnmark L, Mosekilde L. Osteoporosis is markedly underdiagnosed: a nationwide study from Denmark. Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA. 2005;16(2):134-41.</p>
 +
                                                  <p> Vestergaard P, Rejnmark L, Mosekilde L. Osteoporosis is markedly underdiagnosed: a nationwide study from Denmark. Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA. 2005;16(2):134-41.</p>
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<h5> Can we base our project on a previous one? </h5>
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<p>Yes! You can have a project based on a previous team, or based on someone else's idea, <b>as long as you state this fact very clearly and give credit for the original project.</b> </p>
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<h5>Inspiration</h5>
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<p>Take a look at what other teams have done:</p>
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<li><a href="https://2011.igem.org/Team:Imperial_College_London/Team">2011 Imperial College London</a> (scroll to the bottom)</li>
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<li><a href="https://2014.igem.org/Team:Exeter/Attributions">2014 Exeter </a></li>
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<li><a href="https://2014.igem.org/Team:Melbourne/Attributions">2014 Melbourne </a></li>
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<li><a href="https://2014.igem.org/Team:Valencia_Biocampus/Attributions">2014 Valencia Biocampus</a></li>
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    <p class="P-Larger"><b>Project Synergism</b></p><br class="shortBreak">
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      <p>We have all been working together in every aspect of our project. Nevertheless, some people has had their focus on some areas more than others. The main groups are listed as follows;</p>
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      <ul class="list">
 +
        <li>The group focusing on fixation of CO2, production and secretion of cellulose and light-sensing dormancy consisted of Sarah Hyllekvist Jørgensen, Ellen Gammelmark, Sofie Mozart Mortensen and Emil Bøgh Hansen</li>
 +
        <li>The group focusing on the breakdown of cellulose to create an electrical current and optimization of nanowires consisted of Felix Boel Pedersen, Frederik Bartholdy Flensmark Neergaard, Jonas Borregaard Eriksen and Malte Skovsager Andersen.</li>
 +
        <li>The group focusing on implementation of the device into an urban environment, as well as our outreach consisted of Emil Søndergaard, Frederik Mark Højsager and Lene Vest Munk Thomsen.</li>
 +
        <li>The mathematical modelling of our project was single-handedly performed by Emil Vyff Jørgensen.</li>
 +
        <li>Coding and design of the wiki was performed by Felix Boel Pedersen and Frederik Mark Højsager.</li>
 +
      </ul>
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<h5>Team training and Project start</h5>
 
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<p>Tell us if your institution teaches an iGEM or synthetic biology class and when you started your project:</p>
 
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<li>When did you start working on  your project?</li>
 
  
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Revision as of 12:10, 10 October 2017

Attributions

Nothing can be done alone, so please scroll further to read about the contributors, who helped make this project a reality.

sweet picture of supervisors being all happy and stuff

Laboratory, Technical and General support


We would like to give special thanks to our supervisors:

  • Assistant professor Mikkel Girke Jørgensen, for his general support and advice on development of the project, the laboratory, fundraising and team synergy.
  • Ph.D. student and former iGEM participant Patrick Rosendahl Andreassen, for his guidance and technical assistance in the laboratory.
  • Ph.D student and former iGEM participant Thøger Jensen Krogh, for his help in developing the wiki, as well as his laboratory guidance.
  • Cand.phil student and former iGEM participant Tim Munk, for his focus on team dynamics and advice for our human practices.

Thanks to:

  • Academic assistant Tina Kronborg for guidance in the lab and for providing us with lab equipment.
  • Medical Laboratory Technician, Simon Rose, for giving us a course in security and lab safety.
  • Postdoc Oona Sneoyenbos-West provided us with Geobacter sulfurreducens PCA and knowledge, on growing this bacterial strain. As well as lending, us her laboratory for culturing of the Geobacter sulfurreducens PCA.
  • Business scout and PhD Ann Zahle Andersen presented tools to us for the development of innovative business ideas.
  • Stud.scient Kristian Severin Rasmussen helped us using the oCelleScope for testing.
  • Stud.scient and former iGEM participant Brian Baltzar for hosting a workshop about graphical representation in Adobe Illustrator.
  • Title Jonas Hartwig for helping with some JQuery functionality on the wiki.
  • Stud.scient Birka Jensen, for advice on how to build an iGEM wiki.
  • Stud.med Ida Charlotte Hvam for helpful discussions on development of the wiki.
  • Ph.D student and current iGEM advisor of the team from Bielefeld, Boas Pucker has provided us with BioBricks created by former iGEM teams from Bielefeld.
  • Dem fra Imperial?
  • Stud.polyt Oliver Klinggaard, for helpful discussions on the implementation of a pan-tilt system and for providing os with his project report on the subject.
  • DTU BioBuilders hosted their 5th Annual Biobrick Workshop.
  • The UNIK Copenhagen iGEM team hosted the Nordic Meetup.
  • The TU-Delft iGEM team for hosting the European Meetup.
  • The Danish Science Festival for having us at their annual event.
  • Mimo Antabi for adding our adverts to the university screens preceding the Danish Research Festival.
  • Allan Haurballe Madsen for the practical help associated with our appearance at the Danish Science Festival.
  • Lise Junker Nielsen for practical help associated with the Danish Science Festival and visit from the Academy for Talented Youth. As well as lending us iPads for laboratory use.
  • The Danish Science Festival for having us and to all the visitors attending our booth.
  • Dem der hjælper os med SDU-Meetup hvis nogen
  • Colombia til modelling
  • The high schools that we visited and presented our iGEM project at. These include Odense Technical gymnasium, Mulernes Legatskole and Academy for Talented Youth.
  • The UNF Camp for having us present our project to the students attending.
  • The elementary schools:
  • All former iGEM participants from SDU, attending our preliminary presentation and giving us feedback before the Giant Jamboree.
  • The following groups and associations, for helping us develop our human practices: (SP-Moulding, Borgernes Hus, Kommunens bygninger, Bolbro - områdefornyelse, Odense Byudvikling)
  • Matlab user Nezar for an easy implementation of the gillespie algorithm into matlab.
  • empty spot

Sponsors


Thanks to:

  • The Faculty of Science at University Southern Denmark for providing us with fundamental funds which have been required to make our project possible, and for providing lab benches and equipment.
  • The Faculty of Health Sciences at University of Southern Denmark for providing us with important funds to our project.
  • Integrated DNA Technologies for providing us with 20 kilobases of gBlock gene fragments.
  • SnapGene for providing our team with memberships to their software during the competition.
  • PentaBase for sponsoring us with 10.000 DKK worth of oligos and a further 10% discount.
  • Eurofins Genomics for providing us with an 80% discount on a Mix2Seq kit.

Litterature


Lots of nice articles and booksAkimov V, Henningsen J, Hallenborg P, Rigbolt KT, Jensen SS, Nielsen MM, Kratchmarova I, Blagoev B. StUbEx: Stable tagged ubiquitin exchange system for the global inves tigation of cellular ubiquitination. Journal of proteome res earch. 2014;13(9):4192-204..

Project Synergism


We have all been working together in every aspect of our project. Nevertheless, some people has had their focus on some areas more than others. The main groups are listed as follows;

  • The group focusing on fixation of CO2, production and secretion of cellulose and light-sensing dormancy consisted of Sarah Hyllekvist Jørgensen, Ellen Gammelmark, Sofie Mozart Mortensen and Emil Bøgh Hansen
  • The group focusing on the breakdown of cellulose to create an electrical current and optimization of nanowires consisted of Felix Boel Pedersen, Frederik Bartholdy Flensmark Neergaard, Jonas Borregaard Eriksen and Malte Skovsager Andersen.
  • The group focusing on implementation of the device into an urban environment, as well as our outreach consisted of Emil Søndergaard, Frederik Mark Højsager and Lene Vest Munk Thomsen.
  • The mathematical modelling of our project was single-handedly performed by Emil Vyff Jørgensen.
  • Coding and design of the wiki was performed by Felix Boel Pedersen and Frederik Mark Højsager.