Rstclair2012 (Talk | contribs) |
Rstclair2012 (Talk | contribs) |
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<h4>Artemisinin Binding</h4> | <h4>Artemisinin Binding</h4> | ||
<p style="font-size: 18px"> | <p style="font-size: 18px"> | ||
− | - | + | - Created LSTM model. </br> |
− | - Collected and | + | - Collected and imported positive dataset for proteins that bind to Artemisinin and negative dataset for proteins that do not bind to Artemisinin by hand from NCBI and literature.</br> |
- Train model to learn binding vs. not binding. | - Train model to learn binding vs. not binding. | ||
− | - | + | - Established consistent parameters for learning process (number of proteins per dataset, learning rate, network size, and sub-sequence length viewed). </br> |
− | - | + | - Ran test and repeated to establish consistency.</p></br> |
<h4>Artemisinin Consensus Sequence</h4> | <h4>Artemisinin Consensus Sequence</h4> | ||
<p style="font-size: 18px"> | <p style="font-size: 18px"> | ||
− | - | + | - Created LSTM. </br> |
− | - | + | - Imported dataset (from previous model^). </br> |
− | - | + | - Trained model to look at specified sequence length for binding vs. not binding. </br> |
− | - | + | - Established consistent parameters for learning process (number of proteins per dataset, learning rate, network size, and sub-sequence length viewed). </br> |
- Set variables consistent (batch size, epochs, and sequence length to run in range loop). | - Set variables consistent (batch size, epochs, and sequence length to run in range loop). | ||
− | - | + | - Ran test and repeated to establish consistency.</p></br> |
</p> | </p> | ||
</br> | </br> | ||
<h4>Homeobox Consensus Sequence</h4> | <h4>Homeobox Consensus Sequence</h4> | ||
<p style="font-size: 18px"> | <p style="font-size: 18px"> | ||
− | - | + | - Created LSTM. </br> |
− | - | + | - Imported dataset from Uniprot data website for proteins containing homeo-domain sequence and proteins and proteins not containing homeodomain sequence. </br> |
− | - | + | - Trained model to look at specified sequence length for binding vs. not binding. </br> |
− | - | + | - Established consistent parameters for learning process (number of proteins per dataset, learning rate, network size, and sub-sequence length viewed). </br> |
- Set variables consistent (batch size, epochs, and sequence length to run in range loop). </br> | - Set variables consistent (batch size, epochs, and sequence length to run in range loop). </br> | ||
− | - | + | - Ran test and repeated to establish consistency.</p></br> |
</p> | </p> | ||
</br> | </br> | ||
+ | </feildset> | ||
+ | </form> | ||
</div> | </div> | ||
</html> | </html> |
Latest revision as of 21:15, 1 November 2017
Florida_Atlantic