Difference between revisions of "Competition/Tracks/Environment"

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<h2>Environment Track</h2>
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<h1>Environment Track</h1>
 
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Environment has been a track in iGEM for many years of the competition. Projects that tackle environmental issues have been popular since the first biosensor projects started to appear in the 2006 iGEM competition. Teams have been inspired to work on solutions to problems in their local area, such as the <a href ="https://2011.igem.org/Team:British_Columbia">UBC in 2011</a> and <a href="https://2012.igem.org/Team:Colombia/Project/Problem"> Colombia in 2012</a>. These teams were inspired to tackle massive environmental problems that are unique to their regions. Learning about these problems and how passionate teams can be to find solutions is one of the great parts of the iGEM competition.  
 
Environment has been a track in iGEM for many years of the competition. Projects that tackle environmental issues have been popular since the first biosensor projects started to appear in the 2006 iGEM competition. Teams have been inspired to work on solutions to problems in their local area, such as the <a href ="https://2011.igem.org/Team:British_Columbia">UBC in 2011</a> and <a href="https://2012.igem.org/Team:Colombia/Project/Problem"> Colombia in 2012</a>. These teams were inspired to tackle massive environmental problems that are unique to their regions. Learning about these problems and how passionate teams can be to find solutions is one of the great parts of the iGEM competition.  
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<li><a href ="https://igem.org/Team_Tracks?year=2016"> iGEM 2016 Environment team list</a></li>
 
<li><a href ="https://igem.org/Team_Tracks?year=2015"> iGEM 2015 Environment team list</a></li>
 
<li><a href ="https://igem.org/Team_Tracks?year=2015"> iGEM 2015 Environment team list</a></li>
 
<li><a href ="https://igem.org/Team_Tracks?year=2014"> iGEM 2014 Environment team list</a></li>
 
<li><a href ="https://igem.org/Team_Tracks?year=2014"> iGEM 2014 Environment team list</a></li>
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<h2>Winning Environment projects in 2013</h2>
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<h3>2013 Undergrad Section: Physco Filter</h3>
 
  
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<h3><a href="https://2013.igem.org/Team:TU-Munich"> TU-Munich </a>(also first runner up at the World Championships)</h3>
 
  
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<img src="https://static.igem.org/mediawiki/2017/e/ef/HQ_environment_peking2016.jpg">
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<h3><a href="https://2016.igem.org/Team:Peking">Peking 2016</a></h3>
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<img src="https://static.igem.org/mediawiki/2013/3/30/TUM13_slider_team2.jpg" width="920px">
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<h4> Uranium Reaper</h4>
  
 
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<strong>Project abstract:</strong> The contamination of aquatic ecosystems with multiple anthropogenic pollutants has become a problem since the industrial revolution. Antibiotics, hormones and various noxious substances threaten environmental health and are not effectively removed by conventional waste water treatment.  
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Uranium, a well-known radioactive metal, exhibits both chemical toxicity and radioactive hazards to environment and humans. Nowadays, several common methods are adopted to cope with uranium pollution, such as solidification of poluted soil and phytoremediation. Nevertheless, these methods are flawed owing to high cost, lengthy procedures as well as potential secondary contamination. To overcome the drawbacks of traditional methods, Peking iGEM team focus on constructing a novel multi-functional biological material which is able to absorb uranyl ion fleetly with high specificity and affinity. This uranyl-absorbing material can be synthesized and secreted continuously by bacteria, self-assembled in extracellular environment, and harvested in a cost-effective manner. It also has a great potential to be modified and expanded due to its modular design. With this material, we demonstrate how the increasingly serious uranium pollution can be treated in a more efficient and sustainable way in the near future.
 
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We propose to employ transgenic plants which produce effectors for enzymatic degradation (BioDegradation) or specific binding (BioAccumulation) of pollutants. The autotrophic, sedentary, aquatic nature of the moss Physcomitrella patens makes it an ideal chassis for a self-renewing, low-maintenance and cheap water filter. A light-triggered kill switch prevents unintended environmental spreading by limiting viability to places where the spectrum of sun light is appropriately filtered. Furthermore, we have developed a device to implement this biological filter in an aquatic environment, investigated the application of this new technology and examined its economic feasibility. Based on our results, PhyscoFilter may become a game-changing approach to improve global water quality in an affordable and sustainable fashion.
 
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<h3>2013 Overgrad Section: Bee. Coli </h3>
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<h3><a href="https://2016.igem.org/Team:Peking">TJUSLS China 2016</a></h3>
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<h4>  PETase </h4>
  
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<h3><a href="https://2013.igem.org/Team:NYMU-Taipei"> NYMU-Taipei</a></h3>
 
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<strong>Project abstract:</strong> To save bees from Nosema ceranae, the culprit of colony collapse disorder (CCD), we created Bee. coli. from E. coli K-12 MG1655, a bacterium residing natively in bees. Bee. coli is strategically designed to work as follows. First, it continuously secretes mannosidase to inhibit the sprouting of N. ceranae spores. Second, if the bee is infected, the fungus-killing-circuit with a positive feedback design will be turned on to wipe out N. ceranae. Third, if these designer weapons should fail to conquer N. ceranae, our designed bee-suicide-operon will be activated to kill the infected bee and save its companions. Fourth, a light-inducible lysis system is included to ensure our Bee. coli only lives inside of the bee. Fifth, we apply encapsulation as the way to send Bee. coli into the bee. Since the capsule will only dissolve in a bee’s gut, our Bee. coli will not spread to the environment.
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TJUSLS China's subject of the competition for this year is the surface display to modify PET hydrolase(PETase). PET hydrolase was found from a kind of microorganism living on PET as the main carbon source. It can degrade macromolecular polymers into monomers. Surface display can reveal the protein whose gene code is coalescing the gene code of target protein or polypeptide with the counterpart of ankyrin on the surface of the host cell wall to harvest the whole cell catalyst. The protagonists of our project, which are PETase and the surface display technology, will act in two aspects. Firstly, create the mutant of PETase in order to improve the degradation efficiency and thermal stability. Secondly, useing surface display on the surface of the prokaryotic (Escherichia coli) and eukaryotic (Pichia yeast) for whole cell enzyme catalysis reaction.
 
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<h3>Winning Environment project 2012: bWARE</h3>
 
  
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<h3><a href ="https://2012.igem.org/Team:Paris_Bettencourt"> Paris Bettencourt</a></h3>
 
  
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<h3><a href="https://2015.igem.org/Team:Bielefeld-CeBiTec">Bielefeld-CeBiTec 2015</a></h3>
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<h4> Cell-free Sticks - It works on paper</h4>
  
 
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<strong>Project abstract:</strong> Many synthetic biology projects propose the application of Genetically Engineered Organisms (GEOs) in natural environments. However, issues of biosafety and ethics constrain the use of GEOs outside the lab. A primary concern is the Horizontal Gene Transfer (HGT) of synthetic genes to natural populations. Strategies developed to address this problem provide varying levels of containment, however, the substantial elimination of HGT remains difficult or perhaps impossible. We have developed a new containment system to expand the range of environments where GEOs can be used safely. To do so, we rely on three levels of containment: physical containment with alginate capsules, semantic containment using an amber suppressor system, and an improved killswitch featuring delayed population-level suicide through complete genome degradation. We aim to raise the issue of biosafety by engaging the general public and scientific community through debate, and to advocate the discerning use of biosafety circuits in future iGEM projects.
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We developed cell-free biosensors which can be used as paper-based test strips. These offer significant advantages over conventional biosensors regarding biosafety, sensitivity and output signal. We created two technical approaches built upon self-made E.coli cell extract and our newly established Plasmid Repressor Interaction Assay (PRIA). Both can be immobilized on paper. The fluorescence signal is detected via smartphone. With these novel biosensor designs we tackle the problem of date rape drug intoxications, which is of increasing relevance in our area, by detecting a common ingredient. Another major problem is the contamination of water with heavy metals. Heavy metal sensors designed by previous iGEM teams as well as new biosensors are combined to a modular cell-free test strip for simultaneous detection. All in all, we are providing an extensible biosensor on paper as a valuable tool for water quality analysis for everyone.
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Winning Environment project 2011
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<h3>Winning Environment project 2011: Senseomonas NAstytoxins</h3>
 
  
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<h3><a href ="https://2011.igem.org/Team:Calgary"> Calgary</a></h3>
 
  
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<h3><a href="https://2015.igem.org/Team:Cornell"> Cornell 2015</a></h3>
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<h4>fishPHARM: A Genetically Engineered Solution to Bacterial Coldwater Disease in Salmonid Fish  </h4>
  
 
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<strong>Project abstract:</strong> The University of Calgary's iGEM team is working on developing an electrochemical biosensor for Naphthenic Acids (NAs). NAs are toxic surfactants released into tailings ponds as a by-product of the bitumen extraction process of oil sands. Microorganisms indigenous to tailings ponds that are uniquely capable of degrading NAs suggest that bioremediation may be a viable solution. To be successful, however, levels of NAs need to be monitored and existing methods for detection are costly and offsite. Using two NA-degrading organisms relatively new to iGEM: microalgae and pseudomonads, we used bioinformatics and a novel NA affinity-based screen in an attempt to identify a sensory element. In the process, we have characterized an electrochemical reporter system and built a working measurement device. We have also submitted new parts for future work in microalgae, as well as novel parts to move constructs between Pseudomonas and E. coli.
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Salmonid fish are among one of the leading agricultural exports worldwide. Unfortunately, thousands of these otherwise viable or edible fish are wasted each year to bacterial coldwater disease (BCWD). BCWD is a potentially lethal bacterial infection that currently lacks an effective industrial solution and is caused by the pathogen Flavobacterium psychrophilum. Our fishPHARM system offers a comprehensive treatment for BCWD and is composed of a biologically synthesized peptide integrated into a fish tag drug delivery mechanism to safely administer our treatment to infected fish without environmental harm. Recent research has shown that the entericidin B peptide provides resistance against F. psychrophilum, thereby acting as a curative agent for infected fish. In order to determine the most effective BCWD biological treatment, we aim to engineer E. coli for the production of over twenty different entericidins and to test their activity against F. psychrophilum.
 
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Latest revision as of 23:14, 15 December 2016

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Environment Track

Environment has been a track in iGEM for many years of the competition. Projects that tackle environmental issues have been popular since the first biosensor projects started to appear in the 2006 iGEM competition. Teams have been inspired to work on solutions to problems in their local area, such as the UBC in 2011 and Colombia in 2012. These teams were inspired to tackle massive environmental problems that are unique to their regions. Learning about these problems and how passionate teams can be to find solutions is one of the great parts of the iGEM competition.

You will find images and abstracts of the winning environmental teams from 2011 to 2013 in the page below. Also, follow the links below to see projects from all the Environment track teams.

Peking 2016

Uranium Reaper

Uranium, a well-known radioactive metal, exhibits both chemical toxicity and radioactive hazards to environment and humans. Nowadays, several common methods are adopted to cope with uranium pollution, such as solidification of poluted soil and phytoremediation. Nevertheless, these methods are flawed owing to high cost, lengthy procedures as well as potential secondary contamination. To overcome the drawbacks of traditional methods, Peking iGEM team focus on constructing a novel multi-functional biological material which is able to absorb uranyl ion fleetly with high specificity and affinity. This uranyl-absorbing material can be synthesized and secreted continuously by bacteria, self-assembled in extracellular environment, and harvested in a cost-effective manner. It also has a great potential to be modified and expanded due to its modular design. With this material, we demonstrate how the increasingly serious uranium pollution can be treated in a more efficient and sustainable way in the near future.

TJUSLS China 2016

PETase

TJUSLS China's subject of the competition for this year is the surface display to modify PET hydrolase(PETase). PET hydrolase was found from a kind of microorganism living on PET as the main carbon source. It can degrade macromolecular polymers into monomers. Surface display can reveal the protein whose gene code is coalescing the gene code of target protein or polypeptide with the counterpart of ankyrin on the surface of the host cell wall to harvest the whole cell catalyst. The protagonists of our project, which are PETase and the surface display technology, will act in two aspects. Firstly, create the mutant of PETase in order to improve the degradation efficiency and thermal stability. Secondly, useing surface display on the surface of the prokaryotic (Escherichia coli) and eukaryotic (Pichia yeast) for whole cell enzyme catalysis reaction.

Bielefeld-CeBiTec 2015

Cell-free Sticks - It works on paper

We developed cell-free biosensors which can be used as paper-based test strips. These offer significant advantages over conventional biosensors regarding biosafety, sensitivity and output signal. We created two technical approaches built upon self-made E.coli cell extract and our newly established Plasmid Repressor Interaction Assay (PRIA). Both can be immobilized on paper. The fluorescence signal is detected via smartphone. With these novel biosensor designs we tackle the problem of date rape drug intoxications, which is of increasing relevance in our area, by detecting a common ingredient. Another major problem is the contamination of water with heavy metals. Heavy metal sensors designed by previous iGEM teams as well as new biosensors are combined to a modular cell-free test strip for simultaneous detection. All in all, we are providing an extensible biosensor on paper as a valuable tool for water quality analysis for everyone.

Cornell 2015

fishPHARM: A Genetically Engineered Solution to Bacterial Coldwater Disease in Salmonid Fish

Salmonid fish are among one of the leading agricultural exports worldwide. Unfortunately, thousands of these otherwise viable or edible fish are wasted each year to bacterial coldwater disease (BCWD). BCWD is a potentially lethal bacterial infection that currently lacks an effective industrial solution and is caused by the pathogen Flavobacterium psychrophilum. Our fishPHARM system offers a comprehensive treatment for BCWD and is composed of a biologically synthesized peptide integrated into a fish tag drug delivery mechanism to safely administer our treatment to infected fish without environmental harm. Recent research has shown that the entericidin B peptide provides resistance against F. psychrophilum, thereby acting as a curative agent for infected fish. In order to determine the most effective BCWD biological treatment, we aim to engineer E. coli for the production of over twenty different entericidins and to test their activity against F. psychrophilum.