Difference between revisions of "Sponsors/Special Offers/Mathworks"

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<cneter><b>The complementary software kit includes the following 12 products:</b></center>
 
<cneter><b>The complementary software kit includes the following 12 products:</b></center>
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<li>MATLAB</li>
 
<li>MATLAB</li>
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<li>Computer Vision Toolbox</li>
 
<li>Computer Vision Toolbox</li>
 
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<h3>Request Your Free Kit</h3><br>
 
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<p>To request your Free Software Kit, please complete the <a href="https://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html"> Software Request Form </a>(must be completed by faculty advisor) to request the complimentary software kit.
 
  
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<h2>Request Your Free Kit</h2>
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<p>To request your Free Software Kit, please complete the <a href="https://www.mathworks.com/academia/student-competitions/software-request-registration-igem.html"> Software Request Form </a>(must be completed by faculty advisor) to request the complimentary software kit. </p>
  
 
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<br>
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<h2> Getting Started! </h2>
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<h3> Getting Started! </h3>
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<p>
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<p>Interested in using MATLAB for your <i> in silico </i> projects? <br>
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Interested in using MATLAB for your <i> in silico </i> projects?  
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We have put together a few <u> video tutorials</u> to help you get started. </p>
 
We have put together a few <u> video tutorials</u> to help you get started. </p>
 
 
 
 
 
<ul>
 
<ul>
 
<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/videos/modeling-synthetic-biology-systems-with-matlab-and-simbiology-101691.html"  style="text-decoration: none">SimBiology and MATLAB for Modeling Synthetic Biology Systems</a>
 
<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/videos/modeling-synthetic-biology-systems-with-matlab-and-simbiology-101691.html"  style="text-decoration: none">SimBiology and MATLAB for Modeling Synthetic Biology Systems</a>
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<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/academia/student_center/tutorials/register.html"  style="text-decoration: none"> Getting started with MATLAB </a></li>
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<li style="padding-bottom:5px;" > <a href="http://www.mathworks.com/academia/student_center/tutorials/register.html"  style="text-decoration: none"> Getting started with MATLAB </a>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/building-a-model-in-simbiology-68960.html"  style="text-decoration: none"> Drag-and-drop model-building in SimBiology </a></li>
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</li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/academia/student_center/tutorials/computational-math/solving-ordinary-diff-equations/player.html"  style="text-decoration: none"> Solving nonlinear differential equations in MATLAB </a></li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/building-a-model-in-simbiology-68960.html"  style="text-decoration: none"> Drag-and-drop model-building in SimBiology </a>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/modeling-biology-with-simbiology-an-introduction-for-igem-teams-81817.html"  style="text-decoration: none"> SimBiology for modeling and simulating dynamics of synthetic biology systems </a></li>
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</li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/simulating-a-model-in-simbiology-117245.html" style="text-decoration: none"> Simulating a Model in SimBiology </a></li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/academia/student_center/tutorials/computational-math/solving-ordinary-diff-equations/player.html"  style="text-decoration: none">  
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Solving nonlinear differential equations in MATLAB </a>
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</li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/modeling-biology-with-simbiology-an-introduction-for-igem-teams-81817.html"  style="text-decoration: none"> SimBiology for modeling and simulating dynamics of synthetic biology systems </a>
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</li>
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<li style="padding-bottom:5px;"> <a href="http://www.mathworks.com/videos/simulating-a-model-in-simbiology-117245.html" style="text-decoration: none"> Simulating a Model in SimBiology </a>
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</ul>
 
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</p>
 
</p>
 
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<h3> Technical Mentoring </h3>
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</div>
  
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<div class="column half_size">
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<h3> MATLAB and SimBiology in Past iGEMs </h3>
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<p>See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from previous years!
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<ul>
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<li> <span style="font-weight:bold; color: #d77600"> Team TU Delft </span> <a href="https://2015.igem.org/Team:TU_Delft" style="Font-Weight:" > modeled 3D printing of their bacterial biofilm</a> using MATLAB in order to determine the factors that have a strong influence on the biofilm strength.</li>
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<li> <span style="font-weight:bold; color: #d77600"> Team Oxford </span> built<a href="https://2014.igem.org/Team:Oxford/Modelling" style="Font-Weight:" > stochastic and deterministic models</a> of genetic circuits in order to tackle environmental pollution by developing a device for the detection and degradation of the hazardous yet indispensable solvent dichloromethane (DCM).</li>
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<li> <span style="font-weight:bold; color: #d77600"> Team KU Leuven </span> <a href="https://2013.igem.org/Team:KU_Leuven/Project/modelling" style="Font-Weight:" > modelled</a>the pathway leading to Methyl Salicylate (MeS) production and performed sensitivity analysis, in order to predict MeS production and find the rate limiting steps. </li>
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<li> <span style="font-weight:bold; color: #d77600"> Team Carnegie Mellon </span> derived an <a href =  "https://2012.igem.org/Team:Carnegie_Mellon/Mod-Overview" style="Font-Weight:"> ODE model</a> and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.</li>
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<li> <span style="font-weight:bold; color: #d77600"> Team Slovenia  </span>performed <a href =  "https://2012.igem.org/Team:Slovenia/ModelingPositiveFeedbackLoopSwitch" style="Font-Weight:"> parameter scans</a>  to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.</li>
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</ul></p>
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</div>
  
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<p>
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<div class="column ful_size">
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Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. Feel free to  
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<h3> Technical Mentoring </h3>
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contact Fulden Buyukozturk, SimBiology Technical Expert, to request assistance via email at <a href="mailto:fulden.buyukozturk@mathworks.com" style="color:#005fce;">fulden.buyukozturk@mathworks.com</a>
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<p>Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help. <br>
−
<br><br>
+
Feel free to contact Fulden Buyukozturk, SimBiology Technical Expert, to request assistance via email at <a href="mailto:fulden.buyukozturk@mathworks.com" style="color:#005fce;">fulden.buyukozturk@mathworks.com</a><br>
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Follow Fulden on Twitter <a href="https://twitter.com/fulden_b">@fulden_b</a></p>
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<br>
 +
Follow Fulden on Twitter <a href="https://twitter.com/fulden_b">@fulden_b</a>
 
<br>
 
<br>
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<p> <b> Good luck with your projects! </b> </p>  
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<br>
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<p> <h2> Good luck with your projects! </h2> </p>  
 
</ul>
 
</ul>
 
</div>
 
</div>
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<ul><ul><ul><ul>
 
<ul><ul><ul><ul>
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<h3> MATLAB and SimBiology in Past iGEMs </h3>
 
  
−
See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from previous years!
 
−
<ul><ul>
 
−
 
−
<li> <span style="font-weight:bold; color: #d77600"> Team TU Delft </span> <a href="https://2015.igem.org/Team:TU_Delft" style="Font-Weight:" > modeled 3D printing of their bacterial biofilm</a> using MATLAB in order to determine the factors that have a strong influence on the biofilm strength.</li>
 
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−
 
−
<li> <span style="font-weight:bold; color: #d77600"> Team Oxford </span> built
 
−
<a href="https://2014.igem.org/Team:Oxford/Modelling" style="Font-Weight:" > stochastic and deterministic models</a>
 
−
of genetic circuits in order to tackle environmental pollution by developing a device for the detection and degradation of the hazardous yet indispensable solvent dichloromethane (DCM).
 
−
</li>
 
−
 
−
<li> <span style="font-weight:bold; color: #d77600"> Team KU Leuven </span>
 
−
<a href="https://2013.igem.org/Team:KU_Leuven/Project/modelling" style="Font-Weight:" > modelled</a>
 
−
the pathway leading to Methyl Salicylate (MeS) production and performed sensitivity analysis, in order to predict MeS production and find the rate limiting steps.
 
−
</li>
 
−
 
−
<li> <span style="font-weight:bold; color: #d77600"> Team Carnegie Mellon </span> derived an <a href =  "https://2012.igem.org/Team:Carnegie_Mellon/Mod-Overview" style="Font-Weight:"> ODE model</a> and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
 
−
</li>
 
−
 
−
<li> <span style="font-weight:bold; color: #d77600"> Team Slovenia  </span>performed <a href =  "https://2012.igem.org/Team:Slovenia/ModelingPositiveFeedbackLoopSwitch" style="Font-Weight:"> parameter scans</a>  to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.
 
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</li>
 
−
 
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</ul>
 
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</div>
 
  
  

Revision as of 19:59, 15 December 2016

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Partner Special Offers for iGEM Teams


    Complimentary software and technical support from MathWorks!


    MathWorks is pleased to sponsor the 2017 iGEM competition. As an iGEM partner, MathWorks will provide complimentary software and technical support to all iGEM teams for use in the competition.​ ​

    The complementary software kit includes the following 12 products:

            • MATLAB
            • Simulink
            • SimBiology
            • Curve Fitting Toolbox
            • Symbolic Math Toolbox
            • Optimization Toolbox
            • Global Optimization Toolbox
            • Bioinformatics Toolbox
            • Statistics and Machine Learning Toolbox
            • Partial Differential Equation Toolbox
            • Image Processing Toolbox
            • Computer Vision Toolbox


    Request Your Free Kit

    To request your Free Software Kit, please complete the Software Request Form (must be completed by faculty advisor) to request the complimentary software kit.


    Getting Started!

    Interested in using MATLAB for your in silico projects?
    We have put together a few video tutorials to help you get started.

    For more resources, check out the competition page, product pages, webinars, and additional tutorials.


    MATLAB and SimBiology in Past iGEMs

    See how former iGEMers used MathWorks tools, such as MATLAB and SimBiology, for a variety of modeling and simulation projects. A few examples from previous years!

    • Team TU Delft modeled 3D printing of their bacterial biofilm using MATLAB in order to determine the factors that have a strong influence on the biofilm strength.
    • Team Oxford built stochastic and deterministic models of genetic circuits in order to tackle environmental pollution by developing a device for the detection and degradation of the hazardous yet indispensable solvent dichloromethane (DCM).
    • Team KU Leuven modelledthe pathway leading to Methyl Salicylate (MeS) production and performed sensitivity analysis, in order to predict MeS production and find the rate limiting steps.
    • Team Carnegie Mellon derived an ODE model and used it with experimental time-course data to estimate key parameters like transcriptional and translational efficiency.
    • Team Slovenia performed parameter scans to better characterize the effects of the parameters space on the behavior their bistable system, Switch IT.

    Technical Mentoring

    Can't find what you are looking for? Have a specific question about using MATLAB tools for your iGEM work? We are here to help.
    Feel free to contact Fulden Buyukozturk, SimBiology Technical Expert, to request assistance via email at fulden.buyukozturk@mathworks.com

    Follow Fulden on Twitter @fulden_b

    Good luck with your projects!