Description
This year, iGEM bordeaux 2017 aims to study the alternative splicing of the unc-60 gene in C. elegans. This gene can be spliced differently and two isoforms can be generated : UNC-60A, a non muscular isoform and UNC-60B, a muscular isoform. Thus, identity of cell depends on these two proteins and that is why our project focuses on the splicing of unc-60 which generate the muscular isoform. Our goal is to control this splicing by light activation through a mechanism known in Neurospora crassa (Fungi) or, alternatively, by chemical activation also known in N. crassa.
The alternative splicing of this gene is regulated by the SUP-12's RRM (RNA Recognition Motif) domain, a region of the protein which binds to the unc-60 pre-RNA, to induce, with ASD-2, the muscular isoform. Thus the cell becomes a muscular cell. The "Stargate WCC" project aims to control alternative splicing of unc-60 by SUP-12 protein. For this purpose, our team uses a photo-inducible system, the White Collar system which exists naturally in N. crassa in which it regulates the circadian rhythm according to the light level. Indeed, two proteins, White Collar 1 and 2, fit together in order to form a complex : the White Collar Complex or WCC, activated by a conformational change in response to light. Then this WCC modified and activated binds to circadian genes promoters in the aim of inducing FRQ proteins. In the worm, the WCC will be implied into neural cell to activate SUP-12 protein, regulate the alternative splicing of unc-60 and generate a muscle cell instead of a neural cell.
: Muscle-Specific Splicing Factors ASD-2 and SUP-12 Cooperatively Switch Alternative Pre-mRNA Processing Patterns of the ADF/Cofilin Gene in Caenorhabditis elegans
Ohno G, Ono K, Togo M, Watanabe Y, Ono S, et al. (2012) Muscle-Specific Splicing Factors ASD-2 and SUP-12 Cooperatively Switch Alternative Pre-mRNA Processing Patterns of the ADF/Cofilin Gene in Caenorhabditis elegans. PLOS Genetics 8(10): e1002991. https://doi.org/10.1371/journal.pgen.1002991
In conclusion, the "Stargate WCC" project is intended to control alternative splicing via different regulating mechanisms involving a logical gate that inspired us the project name. For this purpose, our team decided to focus on gene expression in muscular cell in order to control cell differentiation. This experimental procedure strives to give necessary tools to lead then some biomedical research linked to this phenomenon.
