Difference between revisions of "Team:ZJU-China/Parts"

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}
 
}
 
/*文中自定义*/
 
/*文中自定义*/
 +
 +
/*老姜要好看一点的表格*/
 +
.tableNice thead, .tableNice tr {
 +
    text-align: center;
 +
    border-top-width: 1px;
 +
    border-top-style: solid;
 +
    border-top-color: #b1c6d9;
 +
}
 +
.tableNice {
 +
    width: auto;
 +
    align: center;
 +
    border-bottom-width: 1px;
 +
    border-bottom-style: solid;
 +
    border-bottom-color: #D0E9FF;
 +
}
 +
 +
/* Padding and font style */
 +
.tableNice td, .tableNice th {
 +
    padding: 5px 10px;
 +
    font-size: 12px;
 +
 +
    color: #00343F;
 +
}
 +
 +
/* Alternating background colors */
 +
.tableNice tr:nth-child(even) {
 +
    background: transparent;
 +
 +
}
 +
.tableNice tr:nth-child(odd) {
 +
    background: #EBFFFF;
 +
}
 +
 +
.tableOuter
 +
{
 +
    align: center;
 +
    text-align: left;
 +
}
 +
/*老姜要好看一点的表格止*/
 
</style>
 
</style>
  
Line 453: Line 492:
  
 
           <div style="height: 50px;"></div>
 
           <div style="height: 50px;"></div>
−
   <h1 id="introduction" class="page-header ArticleHead GreenAH">Parts<hr></h1>
+
   <h1 id="introduction" class="page-header ArticleHead GreenAH">Parts</h1>
 
   <p  class="PP">Welcome to the ZJU-China Parts Pages.This year, we designed 31 parts,and 18 of them had been submitted to the iGEM Registry follow the BioBricks assembly standard as described by RFC10.</p>
 
   <p  class="PP">Welcome to the ZJU-China Parts Pages.This year, we designed 31 parts,and 18 of them had been submitted to the iGEM Registry follow the BioBricks assembly standard as described by RFC10.</p>
 
   <p class="PP">We have a brief description of our parts here, but if you would like more detailed information on the parts, we strongly recommend you visit the corresponding parts pages on the iGEM BioBricks Registry.</p>
 
   <p class="PP">We have a brief description of our parts here, but if you would like more detailed information on the parts, we strongly recommend you visit the corresponding parts pages on the iGEM BioBricks Registry.</p>
  
 +
  <!-- Table -->
  
−
 
+
   <table id="partTable" class="table tableNice">
−
<div class="panel panel-warning">
+
−
  <!-- Default panel contents -->
+
−
  <div class="panel-heading">Parts</div>
+
−
 
+
−
  <!-- Table -->
+
−
   <table id="partTable" class="table">
+
 
   <tr>
 
   <tr>
 
<th>Name</th>
 
<th>Name</th>
Line 484: Line 518:
 
</tr>
 
</tr>
 
       <th>BBa_K2207001</th>
 
       <th>BBa_K2207001</th>
−
       <td></td>
+
       <td>Promoters</td>
 
       <td>Hex promoter</td>
 
       <td>Hex promoter</td>
 
       <td>Junbo Yang</td>
 
       <td>Junbo Yang</td>
−
       <td></td>
+
       <td>3317</td>
 
       <td></td>
 
       <td></td>
  
 
<tr>
 
<tr>
 
     <th>BBa_K2207002</th>
 
     <th>BBa_K2207002</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>Ech42 promoter</td>
 
     <td>Ech42 promoter</td>
 
     <td>Junbo Yang</td>
 
     <td>Junbo Yang</td>
−
     <td></td>
+
     <td>3352</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
Line 501: Line 535:
 
<tr>
 
<tr>
 
     <th>BBa_K2207003</th>
 
     <th>BBa_K2207003</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System I SOD-Tubulin dobule promoter</td>
 
     <td>Trichoderma HR System I SOD-Tubulin dobule promoter</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>3155</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 511: Line 545:
 
<tr>
 
<tr>
 
     <th>BBa_K2207004</th>
 
     <th>BBa_K2207004</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System II Ech42-H3 double promoter</td>
 
     <td>Trichoderma HR System II Ech42-H3 double promoter</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>4845</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 521: Line 555:
 
<tr>
 
<tr>
 
     <th>BBa_K2207005</th>
 
     <th>BBa_K2207005</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System III L1-ADH1-RP27-L2</td>
 
     <td>Trichoderma HR System III L1-ADH1-RP27-L2</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>903</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 530: Line 564:
 
<tr>
 
<tr>
 
     <th>BBa_K2207006</th>
 
     <th>BBa_K2207006</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System IV L3-ADH1-RP27-L4</td>
 
     <td>Trichoderma HR System IV L3-ADH1-RP27-L4</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>903</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 540: Line 574:
 
<tr>
 
<tr>
 
     <th>BBa_K2207007</th>
 
     <th>BBa_K2207007</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System V Homologous Binding SiteA</td>
 
     <td>Trichoderma HR System V Homologous Binding SiteA</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>1676</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 549: Line 583:
 
<tr>
 
<tr>
 
     <th>BBa_K2207008</th>
 
     <th>BBa_K2207008</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>Trichoderma HR System VI Homologous Binding SiteB</td>
 
     <td>Trichoderma HR System VI Homologous Binding SiteB</td>
 
     <td>Yihe Zhang</td>
 
     <td>Yihe Zhang</td>
−
     <td></td>
+
     <td>1650</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 568: Line 602:
 
<tr>
 
<tr>
 
     <th>BBa_K2207010</th>
 
     <th>BBa_K2207010</th>
−
     <td></td>
+
     <td>Other</td>
 
     <td>Phl Operator</td>
 
     <td>Phl Operator</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td>823</td>
+
     <td>825</td>
−
     <td></td>
+
     <td>✔</td>
  
 
</tr>
 
</tr>
Line 578: Line 612:
 
<tr>
 
<tr>
 
     <th>BBa_K2207011</th>
 
     <th>BBa_K2207011</th>
−
     <td></td>
+
     <td>Protein Generators</td>
 
     <td>Phl Operator(BBa_K2207010) mRFP</td>
 
     <td>Phl Operator(BBa_K2207010) mRFP</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
 +
    <td>1545</td>
 
     <td></td>
 
     <td></td>
−
    <td>✔</td>
 
  
 
</tr>
 
</tr>
Line 589: Line 623:
 
     <td>Composite Parts</td>
 
     <td>Composite Parts</td>
 
     <td>DAPG sensor(PhlOF)</td>
 
     <td>DAPG sensor(PhlOF)</td>
−
     <td> Qianjin Jiang</td>
+
     <td>Qianjin Jiang</td>
 
     <td>1450</td>
 
     <td>1450</td>
 
     <td></td>
 
     <td></td>
Line 596: Line 630:
 
<tr>
 
<tr>
 
     <th>BBa_K2207013</th>
 
     <th>BBa_K2207013</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>2,4-DAPG PhlABCD Cluster</td>
 
     <td>2,4-DAPG PhlABCD Cluster</td>
 
     <td>Junmin Qian</td>
 
     <td>Junmin Qian</td>
−
     <td></td>
+
     <td>4332</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
Line 605: Line 639:
 
<tr>
 
<tr>
 
     <th>BBa_K2207014</th>
 
     <th>BBa_K2207014</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>PhlAC enzyme</td>
 
     <td>PhlAC enzyme</td>
 
     <td>Junmin Qian</td>
 
     <td>Junmin Qian</td>
−
     <td></td>
+
     <td>5025</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
Line 614: Line 648:
 
<tr>
 
<tr>
 
     <th>BBa_K2207015</th>
 
     <th>BBa_K2207015</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>PhlBD enzyme</td>
 
     <td>PhlBD enzyme</td>
 
     <td>Junmin Qian</td>
 
     <td>Junmin Qian</td>
−
     <td></td>
+
     <td>4212</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207016</th>
 
     <th>BBa_K2207016</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>PhlAB enzyme</td>
 
     <td>PhlAB enzyme</td>
 
     <td>Junmin Qian</td>
 
     <td>Junmin Qian</td>
−
     <td></td>
+
     <td>5604</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207017</th>
 
     <th>BBa_K2207017</th>
−
     <td></td>
+
     <td>Composite Parts</td>
 
     <td>PhlCD enzyme</td>
 
     <td>PhlCD enzyme</td>
 
     <td>Junmin Qian</td>
 
     <td>Junmin Qian</td>
−
     <td></td>
+
     <td>4646</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207018</th>
 
     <th>BBa_K2207018</th>
−
     <td></td>
+
     <td>Devices</td>
 
     <td>GPD-CYC1 expression system</td>
 
     <td>GPD-CYC1 expression system</td>
 
     <td>Shisheng Li</td>
 
     <td>Shisheng Li</td>
−
     <td></td>
+
     <td>382</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207019</th>
 
     <th>BBa_K2207019</th>
−
     <td></td>
+
     <td>Translational units</td>
 
     <td>TRPV1-Ferritin</td>
 
     <td>TRPV1-Ferritin</td>
 
     <td>Cheng Shen</td>
 
     <td>Cheng Shen</td>
−
     <td></td>
+
     <td>4853</td>
 
     <td></td>
 
     <td></td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207020</th>
 
     <th>BBa_K2207020</th>
−
     <td></td>
+
     <td>Translational units</td>
 
     <td>Ferritin</td>
 
     <td>Ferritin</td>
 
     <td>Cheng Shen</td>
 
     <td>Cheng Shen</td>
−
     <td></td>
+
     <td>1173</td>
 
     <td></td>
 
     <td></td>
  
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<tr>
 
<tr>
 
     <th>BBa_K2207021</th>
 
     <th>BBa_K2207021</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>Calcineurin-dependent response element (CDRE)</td>
 
     <td>Calcineurin-dependent response element (CDRE)</td>
 
     <td>Shisheng Li</td>
 
     <td>Shisheng Li</td>
−
     <td></td>
+
     <td>474</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207022</th>
 
     <th>BBa_K2207022</th>
−
     <td></td>
+
     <td>Protein Generators</td>
 
     <td>CDRE(BBa_K2207021) mrfp</td>
 
     <td>CDRE(BBa_K2207021) mrfp</td>
−
     <td> Shisheng Li</td>
+
     <td>Shisheng Li</td>
−
     <td></td>
+
     <td>1186</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207023</th>
 
     <th>BBa_K2207023</th>
−
     <td></td>
+
     <td>Coding Sequences</td>
 
     <td>Mature serine protein from Paecilomyces lilacinus</td>
 
     <td>Mature serine protein from Paecilomyces lilacinus</td>
 
     <td>Zifan Xie</td>
 
     <td>Zifan Xie</td>
−
     <td></td>
+
     <td>882</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207024</th>
 
     <th>BBa_K2207024</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant1</td>
 
     <td>T7-mutant1</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
  
Line 696: Line 730:
 
<tr>
 
<tr>
 
     <th>BBa_K2207025</th>
 
     <th>BBa_K2207025</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant2</td>
 
     <td>T7-mutant2</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207026</th>
 
     <th>BBa_K2207026</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant3</td>
 
     <td>T7-mutant3</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207027</th>
 
     <th>BBa_K2207027</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant4</td>
 
     <td>T7-mutant4</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207028</th>
 
     <th>BBa_K2207028</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant5</td>
 
     <td>T7-mutant5</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207029</th>
 
     <th>BBa_K2207029</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant6</td>
 
     <td>T7-mutant6</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
     <th>BBa_K2207030</th>
 
     <th>BBa_K2207030</th>
−
     <td></td>
+
     <td>Promoters</td>
 
     <td>T7-mutant7</td>
 
     <td>T7-mutant7</td>
 
     <td>Yuxing Chen</td>
 
     <td>Yuxing Chen</td>
−
     <td></td>
+
     <td>42</td>
 
     <td>✔</td>
 
     <td>✔</td>
 
</tr>
 
</tr>
 +
  <tr>
 +
      <th>BBa_K2207031</th>
 +
      <td>Coding Sequences</td>
 +
      <td>PhlE efflux pump</td>
 +
      <td>Qianjun Ming</td>
 +
      <td>1272</td>
 +
      <td>✔</td>
 +
  </tr>
  
 
   </table>
 
   </table>
−
</div>
 
  
 
   <h2 id="favouriteParts" class="H2Head">Favorite Parts!</h2>
 
   <h2 id="favouriteParts" class="H2Head">Favorite Parts!</h2>

Revision as of 00:56, 16 October 2017

Parts

Welcome to the ZJU-China Parts Pages.This year, we designed 31 parts,and 18 of them had been submitted to the iGEM Registry follow the BioBricks assembly standard as described by RFC10.

We have a brief description of our parts here, but if you would like more detailed information on the parts, we strongly recommend you visit the corresponding parts pages on the iGEM BioBricks Registry.

Name Type Description Designer Length(bp) Submitted
BBa_K2207000 Device H3-RP27 expression system Qianjin Jiang 2644
BBa_K2207001 Promoters Hex promoter Junbo Yang 3317
BBa_K2207002 Promoters Ech42 promoter Junbo Yang 3352
BBa_K2207003 Composite Parts Trichoderma HR System I SOD-Tubulin dobule promoter Yihe Zhang 3155 ✔
BBa_K2207004 Composite Parts Trichoderma HR System II Ech42-H3 double promoter Yihe Zhang 4845 ✔
BBa_K2207005 Composite Parts Trichoderma HR System III L1-ADH1-RP27-L2 Yihe Zhang 903 ✔
BBa_K2207006 Composite Parts Trichoderma HR System IV L3-ADH1-RP27-L4 Yihe Zhang 903 ✔
BBa_K2207007 Composite Parts Trichoderma HR System V Homologous Binding SiteA Yihe Zhang 1676 ✔
BBa_K2207008 Composite Parts Trichoderma HR System VI Homologous Binding SiteB Yihe Zhang 1650 ✔
BBa_K2207009 Coding Sequences PhlF transcription factor Qianjin Jiang 627 ✔
BBa_K2207010 Other Phl Operator Yuxing Chen 825 ✔
BBa_K2207011 Protein Generators Phl Operator(BBa_K2207010) mRFP Yuxing Chen 1545
BBa_K2207012 Composite Parts DAPG sensor(PhlOF) Qianjin Jiang 1450
BBa_K2207013 Composite Parts 2,4-DAPG PhlABCD Cluster Junmin Qian 4332 ✔
BBa_K2207014 Composite Parts PhlAC enzyme Junmin Qian 5025
BBa_K2207015 Composite Parts PhlBD enzyme Junmin Qian 4212
BBa_K2207016 Composite Parts PhlAB enzyme Junmin Qian 5604
BBa_K2207017 Composite Parts PhlCD enzyme Junmin Qian 4646
BBa_K2207018 Devices GPD-CYC1 expression system Shisheng Li 382
BBa_K2207019 Translational units TRPV1-Ferritin Cheng Shen 4853
BBa_K2207020 Translational units Ferritin Cheng Shen 1173
BBa_K2207021 Promoters Calcineurin-dependent response element (CDRE) Shisheng Li 474 ✔
BBa_K2207022 Protein Generators CDRE(BBa_K2207021) mrfp Shisheng Li 1186 ✔
BBa_K2207023 Coding Sequences Mature serine protein from Paecilomyces lilacinus Zifan Xie 882 ✔
BBa_K2207024 Promoters T7-mutant1 Yuxing Chen 42 ✔
BBa_K2207025 Promoters T7-mutant2 Yuxing Chen 42 ✔
BBa_K2207026 Promoters T7-mutant3 Yuxing Chen 42 ✔
BBa_K2207027 Promoters T7-mutant4 Yuxing Chen 42 ✔
BBa_K2207028 Promoters T7-mutant5 Yuxing Chen 42 ✔
BBa_K2207029 Promoters T7-mutant6 Yuxing Chen 42 ✔
BBa_K2207030 Promoters T7-mutant7 Yuxing Chen 42 ✔
BBa_K2207031 Coding Sequences PhlE efflux pump Qianjun Ming 1272 ✔

Favorite Parts!

Our new Basic Parts in Trichoderma spp.

BBa_K2207003 ~ BBa_K2207008

We have collected and proved many new parts which can be used in Trichoderma spp. , including four promoters, two terminators and the selection marker hygB gene. And then we cloned them with homologous sequences on pSB1C3,for any researches who want to express genes in Trichoderma spp, they only need to integrate these parts with GOI and clone them into corresponding vectors(no matter what kinds of transduction methods or plasmids he used.) Click here to see how we constructed these systems.

Best Composite Parts

BBa_K2207013

We got a new gene cluster through PCR from Pseudomonadaceae.fluorescens genome,phlABCD,coding four enzymes used to synthesis 2,4-DAPG.We have mutated some illegal enzyme sites and successfully detected the DAPG production.Click here to see our fantastic work.

Improve T7 promoters

BBa_K2207024 ~ BBa_K2207030

T7 promoter is widely used in genetic engineering for its highly yields of recombinant proteins when T7 RNAP is present. This year,we did Site-directed mutagenesis to get some mutants based on T7 promoters.We used mRFP as a reporter gene to measure these mutants strength.Click here to see more details.

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