Difference between revisions of "Template:Toronto/js/figures"

Line 179: Line 179:
  
 
// results1
 
// results1
−
var results_a = function() {
+
var results1 = function() {
−
var negativeControl = {
+
var pdCas9_cI_mCherry = {
−
x: [0, 2, 4, 6],
+
    x: [0, 1, 2, 3, 4, 5],
−
y: [-0.27, -0.04, -0.01, 0.00],
+
    y: [0.431455654, 0.486018799, 0.451166937, 0.412544754, 0.446801074, 0.431628187, 0.431110474],
−
error_y: {
+
    mode: 'lines+markers',
−
type: 'data',
+
    name: 'pdCas9 + cI/mCherry',
−
array: [0.26, 0.01, 0.00, 0.00],
+
    line: {shape: 'spline'},
−
visible: true
+
    type: 'scatter'
−
},
+
  };
−
mode: 'lines+markers',
+
−
name: 'Negative Control',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
  
−
var positiveControl = {
+
  var pdCas9_sgRNA = {
−
x: [0, 2, 4, 6],
+
x: [0, 1, 2, 3, 4, 5],
−
y: [0.06, 0.49, 0.30, 0.27],
+
y: [0.393061353, 0.461130378, 0.420842868, 0.367656727, 0.357478349, 0.301070788, 0.305702717],
−
error_y: {
+
    mode: 'lines+markers',
−
type: 'data',
+
    name: 'pdCas9 + sgRNA',
−
array: [0.08, 0.05, 0.01, 0.01],
+
    line: {shape: 'spline'},
−
visible: true
+
    type: 'scatter'
−
},
+
  };
−
mode: 'lines+markers',
+
−
name: 'Positive Control',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
  
−
var testDevice1 = {
+
var pdCas9_sgRNA_AcrIIA4 = {
−
x: [0, 2, 4, 6],
+
x: [0, 1, 2, 3, 4, 5],
−
y: [0.23, 0.67, 0.40, 0.41],
+
y: [0.468340088,0.519079993,0.537926389,0.530572262,0.514394667,0.524926408, None],
−
error_y: {
+
    mode: 'lines+markers',
−
type: 'data',
+
    name: 'pdCas9 + sgRNA + AcrIIA4',
−
array: [0.18, 0.16, 0.02, 0.01],
+
    line: {shape: 'spline'},
−
visible: true
+
    type: 'scatter'
−
},
+
  };
−
mode: 'lines+markers',
+
−
name: 'Test Device 1',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
  
−
var testDevice2 = {
+
  var data = [pdCas9_cI_mCherry, pdCas9_sgRNA, pdCas9_sgRNA_AcrIIA4];
−
x: [0, 2, 4, 6],
+
−
y: [0.37, 0.78, 0.49, 0.47],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.16, 0.09, 0.03, 0.01],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 2',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
  
−
var testDevice3 = {
 
−
x: [0, 2, 4, 6],
 
−
y: [-0.13, -0.01, 0.00, 0.01],
 
−
error_y: {
 
−
type: 'data',
 
−
array: [0.08, 0.01, 0.00, 0.00],
 
−
visible: true
 
−
},
 
−
mode: 'lines+markers',
 
−
name: 'Test Device 3',
 
−
line: {shape: 'spline'},
 
−
type: 'scatter'
 
−
};
 
−
 
−
var testDevice4 = {
 
−
x: [0, 2, 4, 6],
 
−
y: [-0.04, 0.45, 0.38, 0.36],
 
−
error_y: {
 
−
type: 'data',
 
−
array: [0.18, 0.06, 0.02, 0.02],
 
−
visible: true
 
−
},
 
−
mode: 'lines+markers',
 
−
name: 'Test Device 4',
 
−
line: {shape: 'spline'},
 
−
type: 'scatter'
 
−
};
 
−
 
−
var testDevice5 = {
 
−
x: [0, 2, 4, 6],
 
−
y: [-0.10, 0.23, 0.13, 0.12],
 
−
error_y: {
 
−
type: 'data',
 
−
array: [0.09, 0.02, 0.01, 0.00],
 
−
visible: true
 
−
},
 
−
mode: 'lines+markers',
 
−
name: 'Test Device 5',
 
−
line: {shape: 'spline'},
 
−
type: 'scatter'
 
−
};
 
−
 
−
var testDevice6 = {
 
−
x: [0, 2, 4, 6],
 
−
y: [-0.12, -0.02, 0.00, 0.00],
 
−
error_y: {
 
−
type: 'data',
 
−
array: [0.05, 0.01, 0.00, 0.00],
 
−
visible: true
 
−
},
 
−
mode: 'lines+markers',
 
−
name: 'Test Device 6',
 
−
line: {shape: 'spline'},
 
−
type: 'scatter'
 
−
};
 
−
 
−
var data = [negativeControl, positiveControl, testDevice1, testDevice2, testDevice3, testDevice4, testDevice5, testDevice6];
 
  
 
var layout = {
 
var layout = {
−
title: 'iGEM Interlab Data 2017',
+
  title: 'MG1655 ∆lacI Growth Profile at 0.4 uM aTc',
−
xaxis: {
+
  xaxis: {
−
title: 'Hour'
+
    title: 'Timepoint(hours)'
−
},
+
  },
−
yaxis: {
+
  yaxis: {
−
title: 'uM Fluorescein / OD600'
+
    title: 'Optical Density'
−
}
+
  }
 
};
 
};
  
−
Plotly.newPlot('results1', data, layout);
+
  Plotly.newPlot('results1', data, layout);
−
}
+
−
 
+
−
 
+
−
var crapterlab = function() {
+
−
var negativeControl = {
+
−
x: [0, 2, 4, 6],
+
−
y: [-0.27, -0.04, -0.01, 0.00],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.26, 0.01, 0.00, 0.00],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Negative Control',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var positiveControl = {
+
−
x: [0, 2, 4, 6],
+
−
y: [0.06, 0.49, 0.30, 0.27],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.08, 0.05, 0.01, 0.01],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Positive Control',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice1 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [0.23, 0.67, 0.40, 0.41],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.18, 0.16, 0.02, 0.01],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 1',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice2 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [0.37, 0.78, 0.49, 0.47],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.16, 0.09, 0.03, 0.01],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 2',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice3 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [-0.13, -0.01, 0.00, 0.01],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.08, 0.01, 0.00, 0.00],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 3',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice4 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [-0.04, 0.45, 0.38, 0.36],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.18, 0.06, 0.02, 0.02],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 4',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice5 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [-0.10, 0.23, 0.13, 0.12],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.09, 0.02, 0.01, 0.00],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 5',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var testDevice6 = {
+
−
x: [0, 2, 4, 6],
+
−
y: [-0.12, -0.02, 0.00, 0.00],
+
−
error_y: {
+
−
type: 'data',
+
−
array: [0.05, 0.01, 0.00, 0.00],
+
−
visible: true
+
−
},
+
−
mode: 'lines+markers',
+
−
name: 'Test Device 6',
+
−
line: {shape: 'spline'},
+
−
type: 'scatter'
+
−
};
+
−
 
+
−
var data = [negativeControl, positiveControl, testDevice1, testDevice2, testDevice3, testDevice4, testDevice5, testDevice6];
+
−
 
+
−
var layout = {
+
−
title: 'iGEM Interlab Data 2017',
+
−
xaxis: {
+
−
title: 'Hour'
+
−
},
+
−
yaxis: {
+
−
title: 'uM Fluorescein / OD600'
+
−
}
+
−
};
+
−
 
+
−
Plotly.newPlot('crapterlab', data, layout);
+
 
}
 
}
  
  
 
interlab();
 
interlab();
−
 
+
mcherry1();
−
crapterlab();
+
results1();

Revision as of 19:47, 7 December 2017

// Interlab graph var interlab = function() { var negativeControl = { x: [0, 2, 4, 6], y: [-0.27, -0.04, -0.01, 0.00], error_y: { type: 'data', array: [0.26, 0.01, 0.00, 0.00], visible: true }, mode: 'lines+markers', name: 'Negative Control', line: {shape: 'spline'}, type: 'scatter' };

var positiveControl = { x: [0, 2, 4, 6], y: [0.06, 0.49, 0.30, 0.27], error_y: { type: 'data', array: [0.08, 0.05, 0.01, 0.01], visible: true }, mode: 'lines+markers', name: 'Positive Control', line: {shape: 'spline'}, type: 'scatter' };

var testDevice1 = { x: [0, 2, 4, 6], y: [0.23, 0.67, 0.40, 0.41], error_y: { type: 'data', array: [0.18, 0.16, 0.02, 0.01], visible: true }, mode: 'lines+markers', name: 'Test Device 1', line: {shape: 'spline'}, type: 'scatter' };

var testDevice2 = { x: [0, 2, 4, 6], y: [0.37, 0.78, 0.49, 0.47], error_y: { type: 'data', array: [0.16, 0.09, 0.03, 0.01], visible: true }, mode: 'lines+markers', name: 'Test Device 2', line: {shape: 'spline'}, type: 'scatter' };

var testDevice3 = { x: [0, 2, 4, 6], y: [-0.13, -0.01, 0.00, 0.01], error_y: { type: 'data', array: [0.08, 0.01, 0.00, 0.00], visible: true }, mode: 'lines+markers', name: 'Test Device 3', line: {shape: 'spline'}, type: 'scatter' };

var testDevice4 = { x: [0, 2, 4, 6], y: [-0.04, 0.45, 0.38, 0.36], error_y: { type: 'data', array: [0.18, 0.06, 0.02, 0.02], visible: true }, mode: 'lines+markers', name: 'Test Device 4', line: {shape: 'spline'}, type: 'scatter' };

var testDevice5 = { x: [0, 2, 4, 6], y: [-0.10, 0.23, 0.13, 0.12], error_y: { type: 'data', array: [0.09, 0.02, 0.01, 0.00], visible: true }, mode: 'lines+markers', name: 'Test Device 5', line: {shape: 'spline'}, type: 'scatter' };

var testDevice6 = { x: [0, 2, 4, 6], y: [-0.12, -0.02, 0.00, 0.00], error_y: { type: 'data', array: [0.05, 0.01, 0.00, 0.00], visible: true }, mode: 'lines+markers', name: 'Test Device 6', line: {shape: 'spline'}, type: 'scatter' };

var data = [negativeControl, positiveControl, testDevice1, testDevice2, testDevice3, testDevice4, testDevice5, testDevice6];

var layout = { title: 'iGEM Interlab Data 2017', xaxis: { title: 'Hour' }, yaxis: { title: 'uM Fluorescein / OD600' } };

Plotly.newPlot('interlab', data, layout); }


// mcherry1 var mcherry1 = function() { var lightControl = { x: [12, 13, 14, 15.5, 16.5, 17.5, 18.5, 20, 21, 22, 23, 24, 25], y: [129.83, 128.24, 138.79, 176.88, 230.48, 277.72, 327.33, 390.20, 425.82, 486.02, 597.98, 742.35, 960.72], error_y: { type: 'data', array: [8.81, 1.81, 11.44, 25.89, 88.77, 109.73, 130.10, 180.74, 204.12, 205.80, 239.24, 243.47, 183.55], visible: true }, mode: 'lines+markers', name: 'Light', line: {shape: 'spline'}, type: 'scatter' };

var darkControl = { x: [12, 13, 14, 15.5, 16.5, 17.5, 18.5, 20, 21, 22, 23, 24, 25], y: [115.16, 112.05, 114.44, 129.58, 132.22, 148.81, 152.93, 229.61, 254.06, 295.24, 351.34, 421.73, 565.07], error_y: { type: 'data', array: [4.64, 7.26, 2.53, 2.40, 14.22, 13.21, 33.95, 60.37, 61.98, 79.71, 94.47, 128.05, 156.18], visible: true }, mode: 'lines+markers', name: 'Dark', line: {shape: 'spline'}, type: 'scatter' };

var data = [lightControl, darkControl];


var layout = { title: 'Normalized Fluorescence over Time', xaxis: { title: 'Hours' }, yaxis: { title: 'RFU / OD600' } }; 

 Plotly.newPlot('mcherry1', data, layout);

}


// results1 var results1 = function() { var pdCas9_cI_mCherry = { x: [0, 1, 2, 3, 4, 5], y: [0.431455654, 0.486018799, 0.451166937, 0.412544754, 0.446801074, 0.431628187, 0.431110474], mode: 'lines+markers', name: 'pdCas9 + cI/mCherry', line: {shape: 'spline'}, type: 'scatter' };

var pdCas9_sgRNA = { x: [0, 1, 2, 3, 4, 5], y: [0.393061353, 0.461130378, 0.420842868, 0.367656727, 0.357478349, 0.301070788, 0.305702717], mode: 'lines+markers', name: 'pdCas9 + sgRNA', line: {shape: 'spline'}, type: 'scatter' };

var pdCas9_sgRNA_AcrIIA4 = { x: [0, 1, 2, 3, 4, 5], y: [0.468340088,0.519079993,0.537926389,0.530572262,0.514394667,0.524926408, None], mode: 'lines+markers', name: 'pdCas9 + sgRNA + AcrIIA4', line: {shape: 'spline'}, type: 'scatter' };

var data = [pdCas9_cI_mCherry, pdCas9_sgRNA, pdCas9_sgRNA_AcrIIA4];


var layout = { title: 'MG1655 ∆lacI Growth Profile at 0.4 uM aTc', xaxis: { title: 'Timepoint(hours)' }, yaxis: { title: 'Optical Density' } }; 

 Plotly.newPlot('results1', data, layout);

}


interlab(); mcherry1(); results1();