Difference between revisions of "Team:XMU-China/Safety"

Line 3: Line 3:
 
<meta charset="utf-8">
 
<meta charset="utf-8">
 
<meta name="viewport" content="width=device-width, initial-scale=1"><!--移动端自适应?-->
 
<meta name="viewport" content="width=device-width, initial-scale=1"><!--移动端自适应?-->
<title>2017.igem.org/Team:XMU-China/Notebook</title>
+
<title>2017.igem.org/Team:XMU-China/Safety</title>
<link href="https://2017.igem.org/Http://2017.igem.org/Team:XMU-China/css/unitcommomCss?action=raw&ctype=text/css" rel="stylesheet" type="text/css">
+
<link href="https://2017.igem.org/Team:XMU-China/css/unitcommomCss?action=raw&ctype=text/css" rel="stylesheet" type="text/css">
 +
<link href="https://2017.igem.org/Team:XMU-China/css/InterLabCss?action=raw&ctype=text/css" rel="stylesheet" type="text/css">
 
</head>
 
</head>
  
<body style="background-color:#FFFF99;"background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<body style="background-color:#FFFFFF;" background="https://static.igem.org/mediawiki/2017/c/cb/T--XMU-China--homebackground.png";>
  
 
<!--guide-->
 
<!--guide-->
Line 14: Line 15:
 
<ul class="menu">
 
<ul class="menu">
  
<li class="dropdown" id="Home" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<li class="dropdown" id="Home">
 
<a href="https://2017.igem.org/Team:XMU-China"><img src="https://static.igem.org/mediawiki/2017/9/9a/T--XMU-China--iconhome.png"></a></li>
 
<a href="https://2017.igem.org/Team:XMU-China"><img src="https://static.igem.org/mediawiki/2017/9/9a/T--XMU-China--iconhome.png"></a></li>
  
<li class="dropdown" id="Project" >
+
<li class="dropdown" id="Project">
<a href="https://2017.igem.org/Team:XMU-China/Project">PROJECT</a>
+
<a>PROJECT</a>
<ul style="dropdown-menu" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<ul style="dropdown-menu">
<li><a href="https://2017.igem.org/Team:XMU-China/Project">Description</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Description">Description</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Design">Design</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Design">Design</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Experiments">Experiments</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Demonstrate">Demonstrate</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Results">Results</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Results">Results</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Measurement">Measurement</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Parts">Parts</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
  
 
<li class="dropdown" id="Notebook">
 
<li class="dropdown" id="Notebook">
<a href="https://2017.igem.org/Team:XMU-China/Notebook">NOTEBOOK</a>
+
<a>NOTEBOOK</a>
<ul style="dropdown-menu" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<ul style="dropdown-menu">
 
<li><a href="https://2017.igem.org/Team:XMU-China/Notebook">Notebook</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Notebook">Notebook</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Parts">Parts</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Experiments">Experiments</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Safety">Safety</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Engineering">Engineering</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Interlab">Interlab</a></li>
+
 
</ul>
 
</ul>
 
</li>
 
</li>
  
 
<li class="dropdown" id="Hardware">
 
<li class="dropdown" id="Hardware">
<a href="https://2017.igem.org/Team:XMU-China/Hardware">HARDWARE</a>
+
<a>HARDWARE</a>
<ul style="dropdown-menu" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<ul style="dropdown-menu">
 
<li><a href="https://2017.igem.org/Team:XMU-China/Hardware">Overview</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Hardware">Overview</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Model">Model</a></li>
+
</ul>
<li><a href="https://2017.igem.org/Team:XMU-China/Entrepreneurship">Entrepreneurship</a></li>
+
</li>
<li><a href="https://2017.igem.org/Team:XMU-China/Demonstrate">Demonstrate</a></li>
+
 
 +
<li class="dropdown" id="Model">
 +
<a>MODEL</a>
 +
<ul style="dropdown-menu">
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Model">Overview</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
  
 
<li class="dropdown" id="HP">
 
<li class="dropdown" id="HP">
<a href="https://2017.igem.org/Team:XMU-China/Human_Practices">HUMAN PRACTICES</a>
+
<a>HUMAN&nbsp;PRACTICES</a>
<ul style="dropdown-menu" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<ul style="dropdown-menu">
 
<li><a href="https://2017.igem.org/Team:XMU-China/Human_Practices">Overview</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Human_Practices">Overview</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/HP/Gold_Integrated">Integrated Practice</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/HP/Silver">Silver</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/HP/Gold_Integrated">Gold</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Engagement">Engagement</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Engagement">Engagement</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/HP/Collaborations">Collaborations</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Entrepreneurship">Entrepreneurship</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/HP/Newsletter">Newsletter</a></li>
 +
</ul>
 +
</li>
 +
 
 +
<li class="dropdown" id="other">
 +
<a>OTHER&nbsp;WORK</a>
 +
<ul style="dropdown-menu">
 +
<li><a href="https://2017.igem.org/Team:XMU-China/InterLab">Interlab</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Contribution">Contribution</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Improve">Improve</a></li>
 +
<li><a href="https://2017.igem.org/Team:XMU-China/Safety">Safety</a></li>
 
</ul>
 
</ul>
 
</li>
 
</li>
  
 
<li class="dropdown" id="Team">
 
<li class="dropdown" id="Team">
<a href="https://2017.igem.org/Team:XMU-China/Team">TEAM</a>
+
<a>TEAM</a>
<ul style="dropdown-menu" background="https://static.igem.org/mediawiki/2017/6/6a/T--XMU-China--background.png";>
+
<ul style="dropdown-menu">
 
<li><a href="https://2017.igem.org/Team:XMU-China/Team">Team</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Team">Team</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Attributions">Attributions</a></li>
 
<li><a href="https://2017.igem.org/Team:XMU-China/Attributions">Attributions</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Sponsors">Sponsors</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Collaborations">Collaborations</a></li>
<li><a href="https://2017.igem.org/Team:XMU-China/Acknowledgement">Acknowledgement</a></li>
+
<li><a href="https://2017.igem.org/Team:XMU-China/Judging">Judging</a></li>
 
</ul>  
 
</ul>  
 
</li>   
 
</li>   
Line 73: Line 91:
  
 
<!--title-->
 
<!--title-->
<div class="title">
+
<div class="title" background="https://static.igem.org/mediawiki/2017/c/cd/T--XMU-China--titlebg.png";>
 
Safety
 
Safety
 
</div>
 
</div>
Line 79: Line 97:
  
 
<!--column-->
 
<!--column-->
<div class="column">
+
<div class="column" id="column">
      <span class="line"></span>  
+
<span class="line" id="lineone"></span>  
        <span class="subtitle">TITLE</span>
+
<span class="subtitle" id="subtitleone">Introduction</span>
        <span class="line"></span>  
+
<span class="line" id="lineone"></span>  
        <p>The team's project description must be documented on their iGEM Team Wiki by the deadline. The project description should be 1-3 paragraphs and only needs to include an up-to-date explanation of the project. This description should be posted on your Team Wiki home page (example URL: https://2017.igem.org/Team:Example).This description will not be used to judge your project. It serves to provide some background on what your team has been working on so far and what you hope to accomplish. It also provides other teams the opportunity to see what you're working on so they can reach out for collaborations or troubleshooting if they are exploring a similar topic. </p>
+
<p>The goal of the interlab study is to explore a major question: How close can the numbers be when fluorescence is measured all around the world? So we measure GFP fluorescence in our lab with plate reader (Tecan Infinite M200pro). This year, three devices and one positive control and one negative control were provided by the Registry. The results show increased fluorescence in the stronger promoter expected.</p><br />
      <span class="line"></span>  
+
<p>After the experiment, five required devices were created:<br />
        <span class="subtitle">TITLE</span>
+
Positive control: I20270 in pSB1C3;<br />
        <span class="line"></span>  
+
Negative control: R0040 in pSB1C3;<br />
        <p>Once the wikis are frozen, users can no longer make any changes until they are unfrozen after the Jamboree. Please be sure to read through the the wiki requirements! No extensions will be provided (no exceptions!) and judges will begin their assessment on November 2, so make sure all changes are done by 11:59PM EDT.PLEASE NOTE: During week of wiki freeze, iGEM experiences higher than normal traffic which can lead to strain on our servers and sessions timing out for users. iGEM HQ recommends that users do not wait till the last days to work on and/or finish their wikis. Edits done during the final week should be very minor edits (spelling mistakes, updating images, etc.). </p>
+
Test Device 1: J23101.BCD2.E0040.B0015 in pSB1C3;<br />
      <span class="line"></span>  
+
Test Device 2: J23106.BCD2.E0040.B0015 in pSB1C3;<br />
        <span class="subtitle">TITLE</span>
+
Test Device 3: J23117.BCD2.E0040.B0015 in pSB1C3;<br />
        <span class="line"></span>  
+
Test Device 4: J23101+I13504 in pSB1C3;<br />
        <p>All iGEM 2017 Team Wikis are required to have the iGEM Login Bar. The Login Bar includes essential links, tools, and information for all users: both wiki creators and viewers. The judges need these tools.
+
Test Device 5: J23106+I13504 in pSB1C3;<br />
The iGEM Login Bar is a 20 pixel high, full-width menu bar that exists on all 2017.igem.org pages. It contains: iGEM related pages, wiki tools (edit, history, watch, etc.), search tools, team information (not released yet), login, and the site menu. It serves as a quick navigation tool for all users and must be maintained on all of your team wiki pages as a result. </p>
+
Test Device 6: J23117+I13504 in pSB1C3.</p>
 +
<span class="blank"></span>
 +
<span class="line" id="linetwo"></span>  
 +
<span class="subtitle"id="subtitletwo">Protocol</span>
 +
<span class="line" id="linetwo"></span>  
 +
<h1>I.&nbsp;Materials</h1>
 +
<p>•&nbsp;Competent cells ( Escherichia coli strain DH5α)<br />
 +
•&nbsp;LB (Luria Bertani) media<br />
 +
•&nbsp;Chloramphenicol (stock concentration 25 mg/mL dissolved in EtOH - working stock 25 ug/mL)<br />
 +
•&nbsp;50 ml Falcon tube (or equivalent, preferably amber or covered in foil to block light)<br />
 +
•&nbsp;Incubator at 37°C<br />
 +
•&nbsp;1.5 ml eppendorf tubes for sample storage<br />
 +
•&nbsp;Ice bucket with ice<br />
 +
•&nbsp;Pipettes</p>
 +
<h1>II.&nbsp;Cell measurement protocol</h1>
 +
<p>1.Transform 8 plasmids into DH5α competent cells, grown in incubator for 12 hrs at 37℃.<br />
 +
2.Pick 2 colonies from each of plate and inoculate it on 10mL LB medium and Chloramphenicol. Grow the cells for 16hrs at 37°C and 220rpm.<br />
 +
3.Cell growth, sampling, and assay.<br />
 +
4.Obtain initial OD 600 measurement of overnight cultures. Then dilute each sample to an OD of 0.02.<br />
 +
5.Incubate the cultures at 37°C and 220rpm. Take 100µL (1% of total volume) samples of the cultures at 0, 2, 4 and 6 hours of incubation.<br />
 +
6.At the end of sampling point measure these samples (OD and Fl measurement).<br />
 +
7.Measurements of absorbance and fluorescence: <br />
 +
(1) OD 600<br />
 +
Device: Plate Reader(Tecan Infinite M200pro) Wavelengths: 600 nm absorption. <br />
 +
(2) Fluorescence<br />
 +
Device: Plate Reader(Tecan Infinite M200pro), 96-well plates. Wavelengths: 485 nm excitation, 530 nm emission.</p>
 +
<span class="blank"></span>
 +
<span class="line" id="linethree"></span>  
 +
<span class="subtitle" id="subtitlethree">Measurements</span>
 +
<span class="line" id="linethree"></span>
 +
<h1>I.&nbsp;OD 600 Reference point</h1>
 +
<span class="tableimg"><img class="tableone" src="#"></span><br />
 +
<span class="table">Table 1. Absorbance at 600nm for LUDOX and H2O</span> 
 +
<h1>II.&nbsp;Fluorescein standard curve</h1>
 +
<span class="tableimg"><img class="tabletwo" src="https://static.igem.org/mediawiki/2017/b/b9/T--XMU-China--Interlab-Table2.png"></span><br />
 +
<span class="table">Table 2. Fluorescence measurements for fluorescein stock solution at decreasing concentration</span><br /><br />
 +
<span class="tableimg"><img class="tablethree" src="https://static.igem.org/mediawiki/2017/d/dc/T--XMU-China--Interlab-Table3.png"></span><br />
 +
<span class="table">Figure 3. The Fluorescein Standard Curve in plate reader with 485nm excitation, 530nm emission</span>
 +
<span class="blank"></span>
 
</div>
 
</div>
 
<!--end column-->
 
<!--end column-->
  
 
<!--foot-->
 
<!--foot-->
<div class="foot">
+
<div class="foot" id="foot">
 
<p>Xiamen University,Fujian,China</p>
 
<p>Xiamen University,Fujian,China</p>
 
<p>No. 422, Siming South Road, Xiamen, Fujian, P. R. China 361005</p>
 
<p>No. 422, Siming South Road, Xiamen, Fujian, P. R. China 361005</p>

Revision as of 15:04, 8 October 2017

2017.igem.org/Team:XMU-China/Safety

Safety
Introduction

The goal of the interlab study is to explore a major question: How close can the numbers be when fluorescence is measured all around the world? So we measure GFP fluorescence in our lab with plate reader (Tecan Infinite M200pro). This year, three devices and one positive control and one negative control were provided by the Registry. The results show increased fluorescence in the stronger promoter expected.


After the experiment, five required devices were created:
Positive control: I20270 in pSB1C3;
Negative control: R0040 in pSB1C3;
Test Device 1: J23101.BCD2.E0040.B0015 in pSB1C3;
Test Device 2: J23106.BCD2.E0040.B0015 in pSB1C3;
Test Device 3: J23117.BCD2.E0040.B0015 in pSB1C3;
Test Device 4: J23101+I13504 in pSB1C3;
Test Device 5: J23106+I13504 in pSB1C3;
Test Device 6: J23117+I13504 in pSB1C3.

Protocol

I. Materials

• Competent cells ( Escherichia coli strain DH5α)
• LB (Luria Bertani) media
• Chloramphenicol (stock concentration 25 mg/mL dissolved in EtOH - working stock 25 ug/mL)
• 50 ml Falcon tube (or equivalent, preferably amber or covered in foil to block light)
• Incubator at 37°C
• 1.5 ml eppendorf tubes for sample storage
• Ice bucket with ice
• Pipettes

II. Cell measurement protocol

1.Transform 8 plasmids into DH5α competent cells, grown in incubator for 12 hrs at 37℃.
2.Pick 2 colonies from each of plate and inoculate it on 10mL LB medium and Chloramphenicol. Grow the cells for 16hrs at 37°C and 220rpm.
3.Cell growth, sampling, and assay.
4.Obtain initial OD 600 measurement of overnight cultures. Then dilute each sample to an OD of 0.02.
5.Incubate the cultures at 37°C and 220rpm. Take 100µL (1% of total volume) samples of the cultures at 0, 2, 4 and 6 hours of incubation.
6.At the end of sampling point measure these samples (OD and Fl measurement).
7.Measurements of absorbance and fluorescence:
(1) OD 600
Device: Plate Reader(Tecan Infinite M200pro) Wavelengths: 600 nm absorption.
(2) Fluorescence
Device: Plate Reader(Tecan Infinite M200pro), 96-well plates. Wavelengths: 485 nm excitation, 530 nm emission.

Measurements

I. OD 600 Reference point


Table 1. Absorbance at 600nm for LUDOX and H2O

II. Fluorescein standard curve


Table 2. Fluorescence measurements for fluorescein stock solution at decreasing concentration


Figure 3. The Fluorescein Standard Curve in plate reader with 485nm excitation, 530nm emission