Difference between revisions of "Team:RPI Troy NY"

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<center><h5> {{RPI_Troy_NY}} </h5>
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<p><a href="#Team">Team</a>
 
<a href="#Project">Project</a>
 
<a href="#Partst">Parts</a>
 
<a href="#Safetyt">Safety</a>
 
<a href="#HP">Human Practices</a></p><center>
 
  
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<img src="https://static.igem.org/mediawiki/2017/4/40/T--RPI_TROY_NY--postcard.jpeg" class="banner" height="400" width="200">
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<a href="https://2014.igem.org/Team:METU_Turkey"style="text-decoration:none;color:#1C140D">HOME </a> </td>
  
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<td width="162px" align="center" onMouseOver="this.bgColor='#FEE5AD'" onMouseOut="this.bgColor='#A1DBB2'" bgColor=#A1DBB2>
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<a href="https://2014.igem.org/Team:METU_Turkey_team" style="text-decoration:none;color:#1C140D">TEAM </a> </td>
  
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<a href="https://2014.igem.org/Team:METU_Turkey_project" style="text-decoration:none;color:#1C140D">PROJECT</a> </td>
  
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<a href="https://2014.igem.org/Team:METU_Turkey_parts" style="text-decoration:none;color:#1C140D">PARTS</a></td>  
  
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<font face= "Century Gothic"> <font size = "4"> <h5>Project Description </h5> </font>
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<a href="https://2014.igem.org/Team:METU_Turkey_modeling" style="text-decoration:none;color:#1C140D">MODELING </a> </td>
<font face= "Times New Roman"> <font size = "3">Sophorolipids are a yeast-derived (Starmerella bombicola), non-toxic and biodegradable alternative to conventional petroleum-derived surfactants and detergents. Currently, the main barrier to commercial production is the cost of isolating and refining sophorolipids of useful chain length. Sophorolipid production competes with the beta-oxidation pathway in yeast for fatty acid substrates, thus lowering yield and producing a mixture of products. The enzyme MFE-2 is a critical component of the beta oxidation pathway. Through genetic engineering, we will selectively repress active domains of this enzyme with the intent of increasing the yield of sophorolipid product. By employing a repression technique rather than a full knockout of the gene, the stress on the yeast metabolism will be reduced.</font>
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<h5>Before you start: </h5>
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<a href="https://2014.igem.org/Team:METU_Turkey_interlabstudy" style="text-decoration:none;color:#1C140D">INTERLAB STUDY </a></td>
<p> Please read the following pages:</p>
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<ul>
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<li>  <a href="https://2017.igem.org/Competition">Competition Hub</a> </li>
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<li> <a href="https://2017.igem.org/Competition/Deliverables/Wiki">Wiki Requirements page</a></li>
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<li> <a href="https://2017.igem.org/Resources/Template_Documentation">Template documentation</a></li>
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</ul>
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<h5> Styling your wiki </h5>
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<p>You may style this page as you like or you can simply leave the style as it is. You can easily keep the styling and edit the content of these default wiki pages with your project information and completely fulfill the requirement to document your project.</p>
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<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>
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<h5> Wiki template information </h5>
 
<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2017.igem.org/Judging/Pages_for_Awards">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
 
  
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<a href="https://2014.igem.org/Team:METU_Turkey_policypractice" style="text-decoration:none;color:#1C140D">POLICY&PRACTICE </a></td>
  
  
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<a href="https://2014.igem.org/Team:METU_Turkey_characterization" style="text-decoration:none;color:#1C140D">CHARACTERIZATION </a></td>
  
  
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<h5> Editing your wiki </h5>
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<a href="https://2014.igem.org/Team:METU_Turkey_safety" style="text-decoration:none;color:#1C140D">SAFETY </a></td>
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
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<p> <a href="https://2017.igem.org/wiki/index.php?title=Team:Example&action=edit"> </a>Use WikiTools - Edit in the black menu bar to edit this page</p>
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<a href="https://2014.igem.org/Team:METU_Turkey_attributions" style="text-decoration:none;color:#1C140D">ATTRIBUTIONS </a></td>
  
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<a href="https://2014.igem.org/Team:METU_Turkey_gallery" style="text-decoration:none;color:#1C140D">GALLERY </a></td>
  
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<h5>Tips</h5>
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<a href="https://2014.igem.org/Team:METU_Turkey_protocols" style="text-decoration:none;color:#1C140D">PROTOCOLS </a></td>
<p>This wiki will be your team’s first interaction with the rest of the world, so here are a few tips to help you get started: </p>
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<li>State your accomplishments! Tell people what you have achieved from the start. </li>
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<li>Be clear about what you are doing and how you plan to do this.</li>
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<li>You have a global audience! Consider the different backgrounds that your users come from.</li>
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<li>Make sure information is easy to find; nothing should be more than 3 clicks away. </li>
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<li>Avoid using very small fonts and low contrast colors; information should be easy to read.  </li>
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<li>Start documenting your project as early as possible; don’t leave anything to the last minute before the Wiki Freeze. For a complete list of deadlines visit the <a href="https://2017.igem.org/Calendar">iGEM 2017 calendar</a> </li>
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<li>Have lots of fun! </li>
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<h5>Inspiration</h5>
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<p> You can also view other team wikis for inspiration! Here are some examples:</p>
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<td align="center" width="350px"><a href="https://igem.org/Main_Page"> <img src="https://static.igem.org/mediawiki/igem.org/6/60/Igemlogo_300px.png" width="170px"></a></td>  
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
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<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
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<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
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<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
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<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
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<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
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</ul>
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<h5> Uploading pictures and files </h5>
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<p> You can upload your pictures and files to the iGEM 2017 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
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<!-- You can replace this image with your team's logo! -->
When you upload, set the "Destination Filename" to <br><code>T--YourOfficialTeamName--NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)<br><br>
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<img src="https://static.igem.org/mediawiki/2014/c/cc/Metuigem_logo.png" width="200px">
                                                                                                             
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<h3>Welcome!  <br> We are Team METU Turkey! </h3>
                                                                                                              <a href="https://2017.igem.org/Special:Upload">
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<p>Scroll down to find more about our project! </p>
                                                                                                              UPLOAD FILES
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<td align="center" width="162px"><a href="http://www.metu.edu.tr"color:#FFFFFF"><img src="https://static.igem.org/mediawiki/2014/9/91/Metulogo.jpg" width="350px"></a></td>
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<a class="twitter-timeline" href="https://twitter.com/iGEM_METU2014" data-widget-id="499378473245229057">@iGEM_METU2014 kullanıcısından Tweetler</a>
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<h1>Degredo PETronum!</h1>
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<img src="https://static.igem.org/mediawiki/2014/b/b5/Dnastrand3.png">
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<p> Introduction:</p>
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<p> This year's METU iGEM Team is composed of eight undergraduates, two advisors, and two graduate students. We come from different areas of study, but we're all working together on this year's synthetic biology project for the iGEM competition. Due to the global impact of plastic pollution, we have decided to focus on biodegradation of polyethylene terephthalate (PET). PET is a widely used material, commonly found in plastic bottles, textiles, and other consumer goods. However, only a small percentage of it ends up being recycled, it became a  global issue, and achieving our goal would have a big impact on the issue of plastic degradation. </p>
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<h3> </h3>
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<p> "Nature doesn't make things like that," said Kenneth Peters, an organic geochemist at Stanford University, "so organisms have never seen that before." </p>
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<h3> How our project will be helpful?</h3>
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<p>  With increasing global consumption and their natural resistance to degradation, plastic materials and their accumulation in the environment is becoming of increasing concern.PET used for carbonated soft drink bottles, processed meat packages peanut butter jars pillow and sleeping bag filling, textile fibers. The issue of plastic pollution has evolved to become a threat to global ecology. Plastic pollution arises from both terrestrial and marine (like bags,pots and bottles). Of course, plastic buried in a landfill rarely sees the light of day. But in the ocean, which is where a lot of discarded grocery bags, soft drink bottles and six-pack rings end up, plastic is bathed in as much light as water. In 2009, researchers from Nihon University in Chiba, Japan, found that plastic in warm ocean water can degrade in as little as a year. This doesn't sound so bad until you realize those small bits of plastic are toxic chemicals such as bisphenol A (BPA) and PS oligomer. These end up in the guts of animals or wash up on shorelines, where humans are most likely to come into direct contact with the toxins.
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  With our project we aim to clean environment from waste PET(like bags,pots and bottles) by biodegradation with E.coli. With this project, PET would reduced to pyruvate, the world will be cleaned from PET and our bacteria could use PET as a food-energy source. All universe is happy!
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References
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    Ahmed, S. , Haamed, A., Hasan, F., Shah A.A., (2008)Biological degradation of plastics: A comprehensive review. Biotechnology Advances. 26(3).246-265. Retrieved from http://www.sciencedirect.com/science/article/pii/S0734975008000141
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  Harris, W. (2014). How long does it take for plastics to biodegrade? Retrieved from http://science.howstuffworks.com/science-vs-myth/everyday-myths/how-long-does-it-take-for-plastics-to-biodegrade.htm
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  Webb, H.K., Arnott, J., Crawford, R., Ivanova, E. (28 December 2012 )Plastic Degradation and Its Environmental Implications with Special Reference to Poly(ethylene terephthalate). Polymers 2013, 5, 1-18. Retrieved from http://marinedebris.info/sites/default/files/literature/Plastic%20Degradation%20and%20Its%20Environmental%20Implications%20with%20Special%20Reference%20to%20Poly(ethylene%20terephthalate).pdf</p>
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<h3>Why did we choose this project?</h3>
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<p> All over the world, pollution is a huge problem. People are so reckless and unconcious about pollution and recycling, precautions of governments are usually insufficient. For example, Americans generate abo¬ut 210 million tons (231 million short tons) of trash, or solid waste, each year. Most of this trash (57 percent) gets placed in municipal landfills. About 56 million tons (27 percent) is recovered through either recycling, (such as glass, paper products, plastic or metals) or through composting.
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So we wanted to make people conscious of pollution and importance of recycling, also tried to give a solution for cleaning enviroment from this toxic waste because it is known that plastics contain toxic chemicals such as bisphenol A (BPA) and PS oligomers.
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References
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Freudenrich,C., (2014) How Composting Works. Retrieved from
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http://home.howstuffworks.com/composting.htm </p>
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<td align="center" width="162px"><a href="http://www.metu.edu.tr"> <img src="https://static.igem.org/mediawiki/2014/9/91/Metulogo.jpg" width="175px"></a></td>
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<td align="center" width="162px"><a href="http://odtuteknokent.com.tr/"> <img src="https://static.igem.org/mediawiki/2014/4/47/Odtuteknokent.jpg" width="175px"></a></td>
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<td align="center" width="162px"><a href="http://www.kardiosis.com.tr/"> <img src="https://static.igem.org/mediawiki/2014/d/d4/Kardiosis.jpg" width="175px"></a></td>
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<td align="center" width="162px"><a href="http://www.etietieti.com/"> <img src="https://static.igem.org/mediawiki/2014/7/75/Eti.jpg" width="175px"></a></td>
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<td align="center"><a href="http://www.taa-ankara.org.tr/eng/index-eng.php"> <img src="https://static.igem.org/mediawiki/2014/0/00/Turkamerikan.jpg" width="175px"></a></td>
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<td align="center"><a href="http://biyoakademi.org/"> <img src="https://static.igem.org/mediawiki/2014/b/b1/Biyoakademi.png" width="175px"></a></td>
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<td align="center"><a href="http://www.sentegen.com/"> <img src="https://static.igem.org/mediawiki/2014/d/dd/Sentegenlogoder.PNG" width="175px"></a></td>
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Welcome!
We are Team METU Turkey!

Scroll down to find more about our project!

Degredo PETronum!

Introduction:

This year's METU iGEM Team is composed of eight undergraduates, two advisors, and two graduate students. We come from different areas of study, but we're all working together on this year's synthetic biology project for the iGEM competition. Due to the global impact of plastic pollution, we have decided to focus on biodegradation of polyethylene terephthalate (PET). PET is a widely used material, commonly found in plastic bottles, textiles, and other consumer goods. However, only a small percentage of it ends up being recycled, it became a global issue, and achieving our goal would have a big impact on the issue of plastic degradation.

"Nature doesn't make things like that," said Kenneth Peters, an organic geochemist at Stanford University, "so organisms have never seen that before."

How our project will be helpful?

With increasing global consumption and their natural resistance to degradation, plastic materials and their accumulation in the environment is becoming of increasing concern.PET used for carbonated soft drink bottles, processed meat packages peanut butter jars pillow and sleeping bag filling, textile fibers. The issue of plastic pollution has evolved to become a threat to global ecology. Plastic pollution arises from both terrestrial and marine (like bags,pots and bottles). Of course, plastic buried in a landfill rarely sees the light of day. But in the ocean, which is where a lot of discarded grocery bags, soft drink bottles and six-pack rings end up, plastic is bathed in as much light as water. In 2009, researchers from Nihon University in Chiba, Japan, found that plastic in warm ocean water can degrade in as little as a year. This doesn't sound so bad until you realize those small bits of plastic are toxic chemicals such as bisphenol A (BPA) and PS oligomer. These end up in the guts of animals or wash up on shorelines, where humans are most likely to come into direct contact with the toxins. With our project we aim to clean environment from waste PET(like bags,pots and bottles) by biodegradation with E.coli. With this project, PET would reduced to pyruvate, the world will be cleaned from PET and our bacteria could use PET as a food-energy source. All universe is happy! References Ahmed, S. , Haamed, A., Hasan, F., Shah A.A., (2008)Biological degradation of plastics: A comprehensive review. Biotechnology Advances. 26(3).246-265. Retrieved from http://www.sciencedirect.com/science/article/pii/S0734975008000141 Harris, W. (2014). How long does it take for plastics to biodegrade? Retrieved from http://science.howstuffworks.com/science-vs-myth/everyday-myths/how-long-does-it-take-for-plastics-to-biodegrade.htm Webb, H.K., Arnott, J., Crawford, R., Ivanova, E. (28 December 2012 )Plastic Degradation and Its Environmental Implications with Special Reference to Poly(ethylene terephthalate). Polymers 2013, 5, 1-18. Retrieved from http://marinedebris.info/sites/default/files/literature/Plastic%20Degradation%20and%20Its%20Environmental%20Implications%20with%20Special%20Reference%20to%20Poly(ethylene%20terephthalate).pdf

Why did we choose this project?

All over the world, pollution is a huge problem. People are so reckless and unconcious about pollution and recycling, precautions of governments are usually insufficient. For example, Americans generate abo¬ut 210 million tons (231 million short tons) of trash, or solid waste, each year. Most of this trash (57 percent) gets placed in municipal landfills. About 56 million tons (27 percent) is recovered through either recycling, (such as glass, paper products, plastic or metals) or through composting. So we wanted to make people conscious of pollution and importance of recycling, also tried to give a solution for cleaning enviroment from this toxic waste because it is known that plastics contain toxic chemicals such as bisphenol A (BPA) and PS oligomers. References Freudenrich,C., (2014) How Composting Works. Retrieved from http://home.howstuffworks.com/composting.htm

Our Supporter: