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− | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/ | + | <div class="image_container col-lg-10 col-lg-offset-1"> |
+ | <img src="https://static.igem.org/mediawiki/2017/6/6e/T--TAS_Taipei--WWTPFlow.jpg" alt="test" id="group"> | ||
+ | <h4 class="subtitle">Figure ___<b> Typical wastewater treatment process. </b><span class="subCred">Figure: Yvonne W.</span></h4> | ||
+ | </div> | ||
</div> | </div> | ||
<div class="row"> | <div class="row"> | ||
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− | <h4 class="para col-lg-12"> We have chosen to use a safe and common lab strain of <i>E. coli</i>, K-12, as our chassis (Environmental Protection Agency 1977). In both approaches, our constructs do not express proteins associated with virulence: PR is a membrane protein that commonly exists in marine bacteria, and for biofilm production we were careful to avoid known virulence factors such as alpha hemolysins (<i>Fattahi et al.</i> 2015). Most importantly, <b>biosafety is built into WWTPs</b>. Before treated effluent is released back into the environment, it must go through a final disinfection step, where chlorine, ozone, or UV radiation are used to kill microbes still present in the wastewater (Pescod 1992). | + | <h4 class="para col-lg-12"> We have chosen to use a safe and common lab strain of <i>E. coli</i>, K-12, as our chassis (Environmental Protection Agency 1977). In both approaches, our constructs do not express proteins associated with virulence: PR is a membrane protein that commonly exists in marine bacteria, and for biofilm production we were careful to avoid known virulence factors such as alpha hemolysins (<i>Fattahi et al.</i> 2015). Most importantly, <b>biosafety is built into WWTPs</b>. Before treated effluent is released back into the environment, it must go through a final disinfection step, where chlorine, ozone, or UV radiation are used to kill microbes still present in the wastewater (Pescod 1992). |
− | + | </h4> | |
</div> | </div> | ||
<div class="row" id="PR"> | <div class="row" id="PR"> | ||
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<div class="row"> | <div class="row"> | ||
− | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/ | + | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/6/66/T--TAS_Taipei--bioAuNP.jpeg" alt="test" id="group"> |
− | <h4 class="subtitle"> | + | <h4 class="subtitle">Figure ____<b> Different volumes of biofilm were added to the same volume of AuNP solution. </b><span class="subCred">Experiment: Yvonne W.</span></h4> |
</div> | </div> | ||
</div><br> | </div><br> | ||
<div class="row"> | <div class="row"> | ||
<h4 class="para col-lg-12"> Adding more than 1 mL of biofilm to the same amount of AuNP solution did not trap more AuNPs (figure _____). We observed that 1 mL of biofilm was just enough to fully cover the bottom of the container. Since only the top of the biofilm directly contacted the AuNP solution, increasing biofilm volume beyond 1 mL simply increased the depth and not the contact area between biofilm and AuNPs. <b>We concluded that biofilm volume is not a main factor determining NP removal. </b> | <h4 class="para col-lg-12"> Adding more than 1 mL of biofilm to the same amount of AuNP solution did not trap more AuNPs (figure _____). We observed that 1 mL of biofilm was just enough to fully cover the bottom of the container. Since only the top of the biofilm directly contacted the AuNP solution, increasing biofilm volume beyond 1 mL simply increased the depth and not the contact area between biofilm and AuNPs. <b>We concluded that biofilm volume is not a main factor determining NP removal. </b> | ||
− | + | </h4> | |
</div> | </div> | ||
<div class="row" id="SA"> | <div class="row" id="SA"> | ||
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− | <h4 class="para col-lg-12"> Next, we tested the effects of surface area on NP removal. Similar to the previous experiment, biofilms were extracted and washed. Two experimental groups were set up in different sized cylinders, with either a small (~1.5 cm<super>2</super>) or big (~9 cm<super>2</super>) base area (figure ____). The bottom 0.5 cm of each container was covered by biofilm, then 10 mL of AuNP solution was added. In this case, the depth of biofilm is consistent, and the contact area between AuNPs and biofilm is equal to the area of the container’s base. All containers were shaken at 100 rpm at room temperature. Every hour (for a total of five hours), one replicate from each group was centrifuged and the absorbance of free AuNPs in the supernatant was measured at 527 nm. | + | <h4 class="para col-lg-12"> Next, we tested the effects of surface area on NP removal. Similar to the previous experiment, biofilms were extracted and washed. Two experimental groups were set up in different sized cylinders, with either a small (~1.5 cm |
+ | <super>2</super>) or big (~9 cm | ||
+ | <super>2</super>) base area (figure ____). The bottom 0.5 cm of each container was covered by biofilm, then 10 mL of AuNP solution was added. In this case, the depth of biofilm is consistent, and the contact area between AuNPs and biofilm is equal to the area of the container’s base. All containers were shaken at 100 rpm at room temperature. Every hour (for a total of five hours), one replicate from each group was centrifuged and the absorbance of free AuNPs in the supernatant was measured at 527 nm. | ||
− | + | </h4> | |
+ | </div> | ||
+ | <div class="row"> | ||
+ | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/3/31/T--TAS_Taipei--SA.jpg" alt="test" id="group"> | ||
+ | <h4 class="subtitle">yo<span class="subCred">waddup</span></h4> | ||
+ | </div> | ||
+ | </div><br> | ||
+ | <div class="row"> | ||
+ | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/2/2f/T--TAS_Taipei--BoswellDiagram-new.jpg" alt="test" id="group"> | ||
+ | <h4 class="subtitle">yo<span class="subCred">waddup</span></h4> | ||
+ | </div> | ||
+ | </div><br> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> We observed that <b>AuNPs were trapped much faster in the large container with a greater biofilm surface area</b> (figure ____). Using data from this experiment, our modeling team computed the concentration of NPs trapped per unit surface area, a constant which was integrated into their model. (Learn more about it <a href=”https://2017.igem.org/Team:TAS_Taipei/Model”>here</a>!) </h4> | ||
</div> | </div> | ||
<div class="row" id="prototype"> | <div class="row" id="prototype"> | ||
<h1 class="title2 col-lg-12">BIOFILM PROTOTYPE</h1> | <h1 class="title2 col-lg-12">BIOFILM PROTOTYPE</h1> | ||
+ | </div> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> <b>Our goal is to design a prototype that 1) maximizes the contact area between biofilm and NPs, and 2) can be easily implemented in existing WWTP infrastructure. </b> </h4> | ||
</div> | </div> | ||
<div class="row" id="max"> | <div class="row" id="max"> | ||
<h1 class="section-title col-lg-12">Maximize NP-Biofilm Contact Area</h1> | <h1 class="section-title col-lg-12">Maximize NP-Biofilm Contact Area</h1> | ||
</div> | </div> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> Some aquariums already utilize biofilms grown on plastic structures called <i>biocarriers</i> for water purification. Commercial biocarriers use various ridges, blades, and hollow structures to maximize surface area available for biofilm attachment (figure___). With that in mind, we <b> designed and 3D-printed plastic (polylactic acid, or PLA) prototypes with many radiating blades to maximize the area available for biofilm attachment</b> (figure____). We used PLA because it was readily available for printing and easy to work with, allowing us to quickly transition from constructing to testing our prototype. | ||
+ | </h4> | ||
+ | </div> | ||
+ | <div class="row"> | ||
+ | <div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/d/db/T--TAS_Taipei--biocarriers.jpg" alt="test" id="group"> | ||
+ | <h4 class="subtitle">Figure ____<span class="subCred">Prototype: Candice L., Yvonne W. Experiment: Yvonne W.</span></h4> | ||
+ | </div> | ||
+ | </div><br> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> To test how well biofilms actually adhere and develop on our prototypes, we used BBa_K2229300 liquid cultures, since they produced the most biofilm in previous tests. After an incubation period, we observed biofilm growth and attachment to our prototypes (figure ____). However, when we lifted the prototype, most of the biofilm fell off, showing that it was only weakly attached to our prototype. We next tested different types of plastic, including polystyrene (figure ___), but found that <b>our biofilms adhered much better to glass surfaces (i.e. glass coverslips) compared to plastic</b> (figure ___). To improve adhesion in the future, we would try to use glass as the material, or change our chassis from <i>E. coli</i> K-12 to another bacterial strain that shows better attachment to plastic surfaces. | ||
+ | </h4> | ||
+ | </div> | ||
+ | <div class="row"> | ||
+ | <div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/0/0e/T--TAS_Taipei--CRA_glassVpolystyrene.jpg" alt="test" id="group"> | ||
+ | <h4 class="subtitle">Figure ____<b> Biofilm adheres better to glass than to plastic (polystyrene) </b> <span class="subCred">Experiment: Yvonne W.</span></h4> | ||
+ | </div> | ||
+ | </div><br> | ||
<div class="row" id="infra"> | <div class="row" id="infra"> | ||
<h1 class="section-title col-lg-12">Maximize Adaptability to Existing Infrastructure</h1> | <h1 class="section-title col-lg-12">Maximize Adaptability to Existing Infrastructure</h1> | ||
+ | </div> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> Lorem ipsum dolor sit amet, consectetur adipisicing elit. Ullam modi excepturi vel iure error deleniti unde, suscipit necessitatibus mollitia eveniet aliquid odit incidunt voluptatum praesentium maxime non et explicabo soluta repellat laborum? Perspiciatis cumque harum ratione similique voluptatibus odio voluptatum, debitis possimus, illum aut quidem dicta corrupti quos minima aperiam. | ||
+ | </h4> | ||
</div> | </div> | ||
<div class="row" id="WWTPModel"> | <div class="row" id="WWTPModel"> | ||
<h1 class="section-title col-lg-12">Biofilm Prototype in a WWTP Model</h1> | <h1 class="section-title col-lg-12">Biofilm Prototype in a WWTP Model</h1> | ||
+ | </div> | ||
+ | <div class="row"> | ||
+ | <h4 class="para col-lg-12"> Lorem ipsum dolor sit amet, consectetur adipisicing elit. Ullam modi excepturi vel iure error deleniti unde, suscipit necessitatibus mollitia eveniet aliquid odit incidunt voluptatum praesentium maxime non et explicabo soluta repellat laborum? Perspiciatis cumque harum ratione similique voluptatibus odio voluptatum, debitis possimus, illum aut quidem dicta corrupti quos minima aperiam. | ||
+ | </h4> | ||
</div> | </div> | ||
<div class="row" id="ref"> | <div class="row" id="ref"> |
Revision as of 09:22, 19 October 2017
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