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<h6>The first step is to download the NFsim zip file, which can be found on <a href="http://michaelsneddon.net/nfsim/download/ " target="_blank">this</a> page (instead of the provided site in the manual) | <h6>The first step is to download the NFsim zip file, which can be found on <a href="http://michaelsneddon.net/nfsim/download/ " target="_blank">this</a> page (instead of the provided site in the manual) | ||
In most cases, the zip file will be saved on the folder “Downloads”, which is undesired. We recommend that you place the file to another location, which can easily be found and reached. For example, we created a new folder on our D-drive (mostly used for data), and named it NFsim. We placed the zip file into this folder and there we unpacked / unzipped the file. NFsim is now located in D:NFsim\NFsim_v1/11. It is recommended to use names without spaces, or choose an underscore _ instead. | In most cases, the zip file will be saved on the folder “Downloads”, which is undesired. We recommend that you place the file to another location, which can easily be found and reached. For example, we created a new folder on our D-drive (mostly used for data), and named it NFsim. We placed the zip file into this folder and there we unpacked / unzipped the file. NFsim is now located in D:NFsim\NFsim_v1/11. It is recommended to use names without spaces, or choose an underscore _ instead. | ||
− | In addition to downloading NFsim, it is required to install a Perl interpreter for Windows user. We downloaded Active Perl (name: ActivePerl-5.24.1.2402-MSWin32-x64-401627.exe) from | + | In addition to downloading NFsim, it is required to install a Perl interpreter for Windows user. We downloaded Active Perl (name: ActivePerl-5.24.1.2402-MSWin32-x64-401627.exe) from <a href="https://www.activestate.com/activeperl/downloads" target="_blank">here</a> |
− | The last download we also recommend is that of an text editor, namely Notepad ++, which can be found | + | The last download we also recommend is that of an text editor, namely Notepad ++, which can be found <a href="https://notepad-plus-plus.org/download/v7.5.1.html" target="_blank">here</a> |
− | https://notepad-plus-plus.org/download/v7.5.1.html | + | |
This was additional information for step 1 of chapter 2 | This was additional information for step 1 of chapter 2 | ||
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Together with the installation of NFsim, you installed also some example models, which can be found in the folder “models”. The simple_system.bngl file is very nice as a start to see how output can be generated. We recommend that you open the bngl files with Notepad ++, as this is a very easy way to not only look at the files, but also to edit them if desired. | Together with the installation of NFsim, you installed also some example models, which can be found in the folder “models”. The simple_system.bngl file is very nice as a start to see how output can be generated. We recommend that you open the bngl files with Notepad ++, as this is a very easy way to not only look at the files, but also to edit them if desired. | ||
− | Next to the simple_system.bngl file, we wrote a general file of our own with nice descriptions of each step and called this file: “system_example.bngl”. The description about how a bngl file is build up, can be found on our wiki page in the rule-based-model section | + | Next to the simple_system.bngl file, we wrote a general file of our own with nice descriptions of each step and called this file: “system_example.bngl”. The description about how a bngl file is build up, can be found on our wiki page in the rule-based-model section and can be found <a href="https://2017.igem.org/Team:TU-Eindhoven/Model/Rule_based_model" target="_blank">here</a> |
<br/> | <br/> | ||
Revision as of 10:40, 28 October 2017