Difference between revisions of "Team:Mingdao/Demonstrate"

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<a href="https://2017.igem.org/Team:Mingdao" class="w3-bar-item w3-button w3-padding-large w3-white">Home</a>
 
<a href="#" class="w3-bar-item w3-button w3-hide-small w3-padding-large w3-blue w3-hover-white" style="text-decoration: none; color: white">Achievements</a>
 
<a href="https://2017.igem.org/Team:Mingdao/Demonstrate" class="w3-bar-item w3-button w3-hide-small w3-padding-large w3-hover-white" style="text-decoration: none; color: white">Project</a>
 
<a href="https://2017.igem.org/Team:Mingdao/HP/Silver" class="w3-bar-item w3-button w3-hide-small w3-padding-large w3-hover-white" style="text-decoration: none; color: white">Human-Practice</a>
 
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<a href="https://2017.igem.org/Team:Mingdao" class="w3-bar-item w3-button w3-padding-large w3-white">Home</a>
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<a href="#" class="w3-bar-item w3-button w3-hide-small w3-padding-large w3-blue w3-hover-white" style="text-decoration: none; color: white">Achievements</a>
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<a href="https://2017.igem.org/Team:Mingdao/Demonstrate" class="w3-bar-item w3-button w3-hide-small w3-padding-large w3-hover-white" style="text-decoration: none; color: white">Project</a>
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      <a class="navbar-brand btn" href="#intro-md" style="text-decoration: none;">Intro</a>
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      <a class="navbar-brand btn" href="#demonstrate-md" style="text-decoration: none">Demonstrate</a>
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      <a class="navbar-brand btn" href="#demonstrate-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Transporter</a>
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    <a class="navbar-brand btn" href="#suicide-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Suicide</a>
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  <a class="navbar-brand btn" href="#probiotic-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Probiotic</a>
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      <a class="navbar-brand btn" href="#intro-md" style="text-decoration: none;">Intro</a>
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      <a class="navbar-brand btn" href="#design-md" style="text-decoration: none">Design</a>
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      <a class="navbar-brand btn" href="#demonstrate-md" style="text-decoration: none">Demonstrate</a>
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      <a class="navbar-brand btn" href="#demonstrate-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Transporter</a>
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    <a class="navbar-brand btn" href="#suicide-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Suicide</a>
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  <a class="navbar-brand btn" href="#probiotic-md" style="text-decoration: none; font-size:1rem"><i class="fa fa-flask" aria-hidden="true"></i> &nbsp;&nbsp;&nbsp; Probiotic</a>
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                            <span class="w3-xxlarge w3-text-white w3-wide">INTRODUCTION</span>
 
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   <span class="w3-center w3-padding-large w3-xlarge w3-wide w3-animate-opacity">INTRODUCTION</span>
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   <span class="w3-center w3-padding-large w3-xlarge w3-wide w3-animate-opacity" style="color: black">Overview</span>
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            <h4 style="font-color: #a6a6a6;">Obesity and type 2 diabetes represent a serious health threat to the population all over the world. Glucose overdose has the major impact on this problem. However, sugar does make you feel happy. Some people may choose to limit, or even quit, sugar intake. Others may do more exercise to stay fit and healthy. In plain words, you have to either decline sweet happiness or pay for it with gaining fat or spending hard time burning calories.</h4>
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                                <h4 style="font-color: #a6a6a6;">In Mingdao’s project this year, we will help you “crush” the sugar by doing nothing except taking one pill full of our engineered probiotics. Really, just sit and read our iGEM story as well as enjoy your sweets and sugary drinks.</h4>
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"Human Practices is the study of how your work affects the world, and how the world affects your work." — Peter Carr, Director of Judging. What’s Human practice? It is not just a work  to confirm and strengthen what we think is right. Instead, we should learn to share our knowledge with the world. We can’t just instill our personal cognition into others, nor can we blindly believe in whatever others say. All in all, human practice is all about “gain, give and mutual interaction”.
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                                <h4 style="font-color: #a6a6a6;">In the research, we addressed the health problems caused by excess glucose, providing information of controlling blood glucose by medicine, briefing previous iGEM team projects dealing with the issue of obesity and diabetes, and detail the mechanism of glucose metabolism and pleasure.</h4>
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<div class="col-md-6 col-sm-6">
                                <h4 style="font-color: #a6a6a6;">In the design and experiment, we will show you how we created  probiotic-based glucose retrieval system with (1) glucose transporter device, which facilitates the cell glucose uptake with high efficiency, (2) glucose responsive suicide circuit, which produces lysis protein and nuclease to destroy bacteria when running out of glucose, and (3) probiotic transgenesis system, which can be utilized to stably transform Lactobacillus acidophilus by chromosomal homologous recombination.</h4>
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<img src="https://static.igem.org/mediawiki/2017/a/a3/MD-trianglify-back-0.png" width="70%" style="margin-bottom:2rem">
                                <h4 style="font-color: #a6a6a6;">In the end, we introduced the modeling of the glucose uptake efficiency of our genetically engineered bacteria based on our experimental results. In addition, we showed the design of our acid-resistant pill and the prototype to mimic the stomach-gut environment and simulate the pill passing through gastric acid and releasing probiotics in the gut.   </h4>
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                                <img src="https://static.igem.org/mediawiki/2017/f/f7/MD_sugar-bacteria-on-project-page.png" alt="Monterosso" style="max-height: 300px; display: block; margin:auto">
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First, we build up a system constructed by the three topics below: Project, Us and the World. What we found is that our activities can actually made up a comprehensive interaction (refer to the following picture beside) For example, we “gain” professional suggestions from experts in various fields, which have made us think of repositioning our project; To conduct educating, we “give” what we know to those who are laymen in synthetic biology and sugar controlling. Other examples of give and gain also includes marketing and sponsorships. It is also necessary that we set up mutual pathways for knowledges, which are also known as meetups, collaborations and cross-domain communications. Totaling up all of them, we’ve excellently completed human practice.
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                        <h2 style="color:#009999">What does glucose do to your body?</h2>
 
                        <h4 style="color: white"><font size="5">SUGAR</font> exists in the types of glucose, fructose, galactose, sucrose, lactose, maltose and starch, as well as in wide varieties of drinks and food such as juice, honey, fruit, yogurt, candies and desserts. Simply speaking, sugar is everywhere, anyone can’t avoid it.  Glucose is the smallest form of sugar and used as energy source for the body. And further, glucose would make you feel pleasure when hitting your tongue letting you crave more sugar like addicted.</h4>
 
                        <h4 style="color: white"><font size="5">OBESITY</font> raises increasing concerns worldwide. Too much sugar in the body will be converted to fat and stored in the liver and cells. Excess sugar will make you overweight and obese. Meanwhile, fat is easily gained but hard to break down.</h4>
 
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                        <h4 style="color: white"><font size="5">TYPE 2 DIABETES</font> is another health problem because of excess sugar in the blood for a long term period. Insulin produced by the pancreas stimulates cells to absorb extracellular glucose. But in patients with type 2 diabetes, cells somehow become insulin resistant and need more amounts of insulin to maintain normal function. So the patients are advised to adjust their diet and control the blood sugar level.</h4>
 
                        <h4 style="color: white">The fat converted from excess glucose may contribute to atherosclerosis and increase the risk of <font size="5">HEART DISEASE</font>. In addition, a study provided evidence that high blood glucose could lead to <font size="5">ALZHEIMER'S DISEASE</font> and may damage your brain to cause dementia (Scientific Reports 2016;6:25589). </h4>
 
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<h2><strong>PROBLEM - </strong>Excess Sugar Consumption</h2>
 
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                    <span class="w3-center w3-padding-large w3-xlarge w3-animate-opacity">How to deal with the excess glucose problems</span>
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<p class="w3-center">To achieve our goal, we consult experts in different areas of study</p>
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                        <h4 style="font-color: #a6a6a6;"> To stay fit and keep healthy, you can choose to control desire and avoid sugary food or drinks. Or what else you can do to avoid the excess glucose in the blood?</h4>
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                        <h4 style="font-color: #a6a6a6;"><strong>DOING EXERCISE</strong> is good to your health and burning glucose you gained. Accordingly, you have to running (at the speed of 5 mph) for 13 min to burn off calories from 330ml of sugary soft drink, 28 min for a medium cup of mocha coffee, 43 min for a sandwich with chicken &amp; bacon or a ¼ pizza (published by Royal Society of Public Health, 2016). When you think about it, I guess you probably already give up.</h4>
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                        <h4 style="font-color: #a6a6a6;"><strong>ARTIFICIAL SWEETENERS</strong> in diet drinks are common synthetic substitutes for glucose such as aspartame and saccharine. One survey by Boston University School of Medicine found that diet drinks are associated with higher risk of dementia caused by strokes (published on Stroke, 2017). Another study published on Canadian Medical Association Journal (CMAJ., 2017) reported that artificial sweeteners linked to risk of weight gain and heart disease. The sweeteners may have negative effects on metabolism, gut bacteria and appetite.</h4>
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                        <h4 style="font-color: #a6a6a6;"> <strong>TAKING MEDICINE</strong> to reduce blood glucose is one of the treatments for diabetes. Canagliflozin is a drug of an inhibitor of subtype 2 sodium-glucose transport proteins (SGLT2) (Can J Diabetes., 2017). SGLT-2 play a major role in renal glucose reabsorption. When blocking SGLT-2 by canagliflozin, the blood glucose could be eliminated through the urine. However, the drug has adverse side effects such as fungal infection, thirst, increased urination and low blood pressure. DPP-4 inhibitor is a relatively new antidiabetic drug (Postgrad Med., 2017). DPP-4 is an enzyme destroying a gastrointestinal hormones called incretins which stimulates insulin production and inhibits the gluconeogenesis by liver. Blocking DPP-4 function by the inhibitor may reduce blood glucose level and lose weight. But DPP-4 inhibitor has severe side effects of nausea, diarrhea and stomach pain, etc.</h4>
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                        <h4 style="font-color: #a6a6a6;"> Exercise to burn off the calories you take from food is not realistic. Artificial sweeteners and diet drinks are considered bad to your health and have higher risk to some diseases. Medicine is the bottom line and you never want to crave food followed by taking pills with side effects. Then, what should you do to deal with the excess glucose? </h4>
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        <p class="w3-center">What have iGEMers done to solve the obesity and diabetes problems?</p>
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        <h2>Problem-solving iGEMers</h2>
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                            <span class="w3-center w3-padding-large w3-xlarge w3-animate-opacity">What have iGEMers done to solve the obesity and diabetes problems?</span>
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                                <h4 style="font-color: #a6a6a6;"> iGEMers are always tackling real problems happening in the world and seeking a potential solution based on synthetic biology. In the issues of obesity and diabetes, iGEM teams NTU-LIHPAO-Taiwan and Stony_Brook in 2015 contributed to the work of body weight control and diabetes treatment, respectively.</h4>
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                                <h4 style="font-color: #a6a6a6;"> <a href="https://2015.igem.org/Team:NTU-LIHPAO-Taiwan" style="text-decoration:none; color: blue;">NTU-LIHPAO-Taiwan</a> has developed Appetite Controller to reduce appetite so as to control body weight. They engineered a probiotic, Lactobacillus casei, to produce CPP-PYY fusion polypeptides. Peptide YY (PYY) is one of the gastrointestinal hormones which controls appetite. The PYY is carried by Cell Penetrating Peptide (CPP) to penetrate into the intestinal cells. The products would keep the body fit by lowering appetite when people crave foods but aren’t hungry. </h4>
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                                <h4 style="font-color: #a6a6a6;"><a href="2015.igem.org/Team:Stony_Brook" style="text-decoration:none; color: blue;">Stony_Brook</a> has engineered a QSP tripeptide secreting E. coli to regulating blood glucose level. The QSP tripeptide is encoded by RSC1A1 gene and acts on kidney cells to inhibit the expression of a glucose transporter (SGLT2) on the cell membrane which facilitates the glucose retrieval. Therefore, the product acts like anti-diabetic drug canagliflozin and would help people with high blood glucose excrete the glucose via urination.</h4>
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                                <h4 style="font-color: #a6a6a6;"> However, if you take NTU-LIHPAO-Taiwan’s product, you may no longer enjoy delicious food. And if you need Stony_Brook’s solution, you’re probably getting some troubles with high blood glucose. Is there any better way to control glucose and enjoy the sweets?</h4>
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  Taiwan has the reputation of “the kingdom of Hem dialysis”. Yes, this is apparently not a thing we should be proud of. A huge sum of money is spent on this problem every year. But, you probably don’t know that a huge ratio of these cases are caused by neither drug abuse nor consuming too much salty food. Instead, diabetes is what may leads to kidney diseases. So, we invited Dr. Wu from the division of nephrology to tell us about the negative effects of diabetes. 
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   In the interview, he mentioned that due to hyperglycemia, HHNK and DKA, which may cause headache, nausea, or even drive people into coma, is often found in people with diabetes. Furthermore, hyperglycemia can also cause the filtration in the glomerular to accelerate, which leads to its hypertrophy. As the function of kidney is gradually damaged, it can no longer eliminate the deleterious substances from our body. With urea and creatinine surging, a person could eventually end up in renal failure. From above, we can get a conclusion that diabetes is surely a thorny chronic disease that we should be cautious of.
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 +
  Taiwan has the reputation of “the kingdom of Hem dialysis”. Yes, this is apparently not a thing we should be proud of. A huge sum of money is spent on this problem every year. But, you probably don’t know that a huge ratio of these cases are caused by neither drug abuse nor consuming too much salty food. Instead, diabetes is what may leads to kidney diseases. So, we invited Dr. Wu from the division of nephrology to tell us about the negative effects of diabetes. 
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   In the interview, he mentioned that due to hyperglycemia, HHNK and DKA, which may cause headache, nausea, or even drive people into coma, is often found in people with diabetes. Furthermore, hyperglycemia can also cause the filtration in the glomerular to accelerate, which leads to its hypertrophy. As the function of kidney is gradually damaged, it can no longer eliminate the deleterious substances from our body. With urea and creatinine surging, a person could eventually end up in renal failure. From above, we can get a conclusion that diabetes is surely a thorny chronic disease that we should be cautious of.
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                            <span class="w3-center w3-padding-large w3-xlarge w3-animate-opacity">Think about why sweets make you happy</span>
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                                <h4 style="font-color: #a6a6a6;"> Have you ever thought about why sweets make you feel pleasure? </h4>
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    <h3><strong>7/29</strong></h3>
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    <h3>Location</h3>
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    <h3><strong>Smooth Fitness Studio</strong></h3>
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    <h3>Consultant</h3>
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    <h3><strong>Coach Wei Qian-Fu</strong></h3>
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<h4 style="font-color: #a6a6a6;">First, <strong>the sugar enters your mouth.</strong> When sugar hits your tongue, the carbohydrate molecules are bound to the sweet receptors of cells in taste buds. Then the signal will be transduced to taste center in the brain via taste nerve. And the dopamine reward system turns on and sends pleasure signal to make you feel happiness. Dopamine is a neurotransmitter in brain neuron system that regulates how you perceive and experience pleasure. In addition to sugary foods, when doing enjoyable activities, dopamine is being released and make you feel happy.
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    After we had a discussion with Dr. Wu, we changed our aim from controlling diabetes to losing weight. Since weight losing is nothing more than controlling the diet and exercising for most people, we soon contacted with a fitness coach and paid a visit to his workshop, so as to learn the relation between them and our project.
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  While we are conversing with the coach, we had a heart full of doubt: Where’s the dumbbells or treadmills we usually see in a gym? After we consult the coach, he told us that the main point of “fitness” is not focusing on building bulky muscles but living a healthier life. We were confused by the time we heard this statement, thinking that it might not be what we had expected.
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  However, after about two hours of explanation, it dawned on us that what he said was all about one core concept:  excess is just as bad as deficiency. Training excessively is damage, while no exercise is unhealthy as well; too much intake of sugar is harmful, while too little sugar consumption is even more dangerous.
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  Similar to what Dr.Wu had told us, knowing how to adjust one’s own physiological stage and managing a balanced diet is the only way to live a healthy life. How wise it is. Perhaps this is the kind of thing we won’t be able to learn from the coach who’s pro in developing six pack abs. In the end of the discussion, he even taught us a breathing method used in training which helps regulate our breathing. To be honest, we had a special experience after today’s visit.
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  In sum, this interview has surprised us - even ordinary things such as breathing has variations, but also let us learn a lot about regulating daily nutritions. Before finishing, he also suggested us to consult to the nutritionist, assuming that we might receive a different response. However, the two experts made similar proposals in the end, showing us the part our work needs to improve.
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  We summarized our project to the fitness instructor. He told us about his work. He has his own workshop, where he focuses on designing lessons, trying ways to stimulate advances in physical function, such as improving the ability of impairment. He said that what he does is absolutely different from those who conduct training for the purpose of body strengthening. 
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  <h4><strong>We</strong>: Can we say that, this is similar to what we call OT (occupational therapy)?
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  Coach: Probably yes. But, I am just a coach for assistant purpose.
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  <h4><strong>We</strong>: Will you recommend any kind of health supplements to your clients?
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  <h4><strong>Coach</strong>: No. Due to the differences of individual needs, I think it is more appropriate that doctors do something like that instead of me. But, I can give them advices on what efficacy they may need for their supplements. 
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  <h4><strong>We</strong>: Any examples?
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  <h4><strong>Coach</strong>: Sure. Let me take weight losing. It’s easy to understand that if a person want to lose weight, the amount of calorie he consume must exceed the amount he take in. So, in the initial phase, calorie consumption is what we focus on. As long as he get used to the diet, we started to focus on the nutrients in food. Since too much starch may lead to obesity, we should make a reduction. Lastly, if he can follow all these requirements, we can than adjust his diet into a much healthier one, like, adding more organic food or something. If we ask a client to stick to all these rules at first, we can say that there’s no possibility that his determination will last.
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<strong>We</strong>: Have you ever seen someone, like, desperately push himself to the limit no matter what it cost, and, just to lose weight?
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<strong>Coach</strong>: Of course, yes. But, I would like to say that if you only care about your stature, but ignore the true value and purpose of exercising; I will tell the person, I’m sorry, but, I think we may not suit your need, and it will be better for you to look for someone else.
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<strong>We</strong>: So, how do clients get started?
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<strong>Coach</strong>: First, we reach a consensus with our clients. Then, we analyze their current physical conditions. Since we should prevent clients from over exercising, we, have the obligation to remind those who train themselves in rashness of the importance of keeping a regular daily routine. 
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<strong>We</strong>: So, how’s it like to have a “regular daily routine” ?
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<strong>Coach</strong>: Try to avoid overworking. Also, too much sleep is not advisable.
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</h4> 
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<strong>We</strong>: So, how healthy we get is not in proportion with how much we exercise, right? 
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<strong>Coach</strong>: Exactly. You shouldn’t do what your body can’t afford just to get a sense of achievement. 
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<strong>We</strong>: So, in addition to exercising, do you control your diet as well? 
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<strong>Coach</strong>: Of course, yes. But, we don’t deliberately restrain the appetite, for people drop off easily because of that. 
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<strong>We</strong>: So, according to what you said, do you consider our project beneficial?
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<h4>
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<strong>Coach</strong>: Sure. I can say that it is really an innovative idea. But, what you should know is that the mechanism of sugar controlling in our body is much more delicate than you can imagine. You guys should give an insight into some impact it may bring to, like: Will there be any side effects? Will people be too reliable on it? Will a long term dosing lead to endocrine disorders? These are all what you should be wary of.  
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<strong>We</strong>: Can we lose weight by just stop eating anything? 
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<h4>
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<strong>Coach</strong>: Yes. But, I must say that if you stay in the condition of hunger for too long, the cell in your body may gradually reduce the consumption of energy. Thus, as long as everything is back to normal, your weight will bounce back rapidly. So, to sum up,   how to maintain is far more important, and also, far more difficult.  
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<strong>We</strong>: We’ve heard of some activists on weight losing. They even take methods such as liposuction and gastrectomy. What’s your opinion?
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<h4>
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<strong>Coach</strong>: Fat will still accumulate after liposuction, and gastrectomy is an irreversible harm to our body. To be blunt, I’m on the side of disapproval. 
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                                <h4 style="font-color: #a6a6a6;"> Next, <strong>the glucose goes to digestive system </strong>through esophagus via stomach to the small intestine. Glucose in there will be absorbed into intestinal cells by cell membrane Sodium Glucose Co-transporter-1 (SGLT1) and go out to bloodstream into the circulatory system by Glucose transporter 2 (GLUT2). </h4>
 
  
                                <h4 style="font-color: #a6a6a6;">Then, <strong>blood glucose</strong> stimulates the pancreas to release insulin which enhances glucose entry into the cells and lower the blood glucose level. However, when blood glucose level is out of control for a long time, the cells may become insulin-resistant and that’s so-called type 2 diabetes. </h4>
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                                <h4 style="font-color: #a6a6a6;">Finally, the <strong>excess glucose</strong> will be converted to glycogen in liver and muscle, as well as stored as fat in adipose tissue. Extra fat will let you gain weight and eventually be obese.</h4>
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          <p>&nbsp;</p>
                            </div>
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                            <span class="w3-center w3-padding-large w3-xlarge w3-animate-opacity">What will MINGDAO iGEM team do?</span>
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                                <h4 style="font-color: #a6a6a6;"> Take a look back and think for a while, in which way you can enjoy sweet happiness and not increase the risk of obesity and diabetes. YES! You got an idea! Block the glucose absorption from entry into the small intestine. You highjack the sugar. Next, we will show you how we “crush” sugar in iGEM project this year.</h4>
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    <p class="special w3-center" style="display: block; margin-bottom:3rem; margin-top:-30px">&nbsp;</p>
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    <h2 class="w3-wide"><strong>- Reference - </strong></h2>
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                            <p class="special w3-center">&nbsp;</p>
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                            <ul class="list-group">
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                              <li class="list-group-item">1. &nbsp;&nbsp;&nbsp;&nbsp;Type 3 Diabetes: Cross Talk between Differentially Regulated Proteins of Type 2 Diabetes Mellitus and Alzheimer's Disease. Sci Rep. 2016;6:25589</li>
+
                              <li class="list-group-item">2. &nbsp;&nbsp;&nbsp;&nbsp;Ten calorie dense food and their activity equivalence. Royal Society for Public Health Publication, 2016.</li>
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                              <li class="list-group-item">3. &nbsp;&nbsp;&nbsp;&nbsp;Sugar- and Artificially Sweetened Beverages and the Risks of Incident Stroke and Dementia: A Prospective Cohort Study. Stroke. 2017;48(5):1139-1146.</li>
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                              <li class="list-group-item">4. &nbsp;&nbsp;&nbsp;&nbsp;Nonnutritive sweeteners and cardiometabolic health: a systematic review and meta-analysis of randomized controlled trials and prospective cohort studies. CMAJ. 2017;189(28):E929-E939.</li>
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                              <li class="list-group-item">5. &nbsp;&nbsp;&nbsp;&nbsp;The Role of Sodium-Glucose Cotransporter 2 Inhibitors in the Management of Type 2 Diabetes. Can J Diabetes. 2017;41(5):517-523.</li>
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                              <li class="list-group-item">6. &nbsp;&nbsp;&nbsp;&nbsp;SGLT2 inhibitor/DPP-4 inhibitor combination therapy - complementary mechanisms of action for management of type 2 diabetes mellitus. Postgrad Med. 2017;129(4):409-420.</li>
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    <span class="w3-xxlarge w3-text-white w3-wide">DESIGN</span>
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                                <p class="special w3-center" style="display: block; margin-bottom:3rem; margin-top:-30px">&nbsp;</p>
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                                <h2 style="letter-spacing: 0.5rem"><strong>- BioBrick Blueprint &amp; Prototype Design - </strong></h2>
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                                <p class="special w3-center">&nbsp;</p>
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                    <span class="badge badge-info">1</span>
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                      &nbsp;&nbsp;&nbsp;Transporter Device Design
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                            <h3><strong>CP29-RBS-aeBlue-RBS-STM1128-TT/pSB1C3 (BBa_K2230028)</strong></h3>
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                            <h4 style="font-color: #a6a6a6;">A facilitated sodium/glucose cotransporter encoded by STM1128 was cloned out from Salmonella typhimurium LT2. The expression of the transporter gene was driven by promoter CP29, which is a strong and constitutive promoter working in both E. coli and Lactobacillus spp. The device is able to facilitate the bacterial glucose absorption and also displays blue color to track the engineered bacteria.</h4>
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                      &nbsp;&nbsp;&nbsp;Suicide Circuit Design
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                            <h3><strong> Pcar-wRBS-PhlF-T-Pr-sRBS-GFP-sRBS-lysis-sRBS-NucA/pSB1C3  (BBa_K2230017)</strong></h3>
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                            <h4 style="font-color: #a6a6a6;">The device includes a glucose responsive promoter (Pcar), a repressor circuit (PhlF &amp; its repressed promoter), and a suicide switch composed of lysis protein (lysis) and nuclease (NucA) to destroy cell membrane and chromosomal DNAs. In the presence of glucose, the repressor PhlF is expressed and inhibit the corresponding promoter. When glucose runs out, the PhlF is gradually degraded and the suicide circuit will then turn on to kill the host. The device also carries GFP for detection and measurement.</h4>
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                      &nbsp;&nbsp;&nbsp;Probiotic System Design
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                            <h3><strong>  RBS-EmR-CP29-RBS-aeBlue/pLBA169 (BBa_K2230004)</strong></h3>
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                            <h4 style="font-color: #a6a6a6;">pLBA169 was designed as vector for transforming Lactobacillus acidophilus thru chromosome homologous recombination. The gene cassette will be inserted to the location at the downstream of slpA (LBA0169) which encodes a surface layer protein. EmR (erythromycin resistance gene) is driven by the upstream promoter of slpA and acts as a selection marker. Promoter CP29 drives gene expression of aeBlue in <i>Lactobacillus.</i></h4>
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                    <!-- ACID-RESISTANT PILL DESIGN -->
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                    <span class="badge badge-info">4</span>
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                      &nbsp;&nbsp;&nbsp;Acid-resistant Pill Design
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                            <h4 style="font-color: #a6a6a6;">Our products will be encapsulated into the pill. Microencapsulation process combines sodium alginate and calcium chloride to form microspheres. This tiny spheres are acid resistant and don’t release probiotics in gastric fluid until passing into higher pH (pH=7~9) in the environment of the intestinal tract. </h4>
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      <span class="w3-xxlarge w3-text-white w3-wide">DEMONSTRATION</span>
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                        <h3>
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                            Glucose is transported into the small intestine and from there into the blood. Na+-glucose cotransporter SGLT1 is involved in intestinal sugar absorption, and Glucose transporter 2 (GLUT2) facilitate glucose transportation from intestine to blood stream.
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                        <h4 style="text-align: center"></h4>
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                <!-- Q1. Which glucose transporter should we use? -->
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                                <h2 style="color: #009999; padding-left: 3rem">Which glucose transporter should we use?</h2>
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                                <h4 style="color: white; padding-left: 3rem"><br>In order to compete the absorption of glucose with intestine, we need a better transporter for glucose uptake with higher efficiency. The value of Km of an enzyme was utilized as a parameter to select our target. <font size="5">Km (Michaelis constant)</font> is determined by the concentration of substrate which permits the enzyme to achieve half Vmax. The lower Km means a higher substrate affinity.</h4>
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                                <h4 style="color: white; padding-left: 3rem"> As you can see in the right table, based on our research, the glucose transporter of <font size="5">Salmonella typhimurium</font> has lowest Km, meaning the highest affinity of glucose bound to the transporter. So we decided to choose glucose transporter system of Salmonella as our target.</h4>
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                            <h3 class="btn btn-lg btn-block btn-info w3-wide">FACT</h3>
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                            <h4 style="color: white">Interestingly, Salmonella is an intracellular intestinal pathogen. To survive in the small intestine epithelial cells, Salmonella has to utilize and metabolize available and limited glucose in a multiple and efficient way. Not surprisingly, Salmonella has higher affinity of glucose transporter compared to human small intestine. And it all makes sense to our assumption.</h4>
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                                    <ul class="list-group">
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                                      <li class="list-group-item w3-wide" style="font-size: 2rem; text-align: center"><strong>- REFERENCE -</strong></li>
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                                      <li class="list-group-item">1. &nbsp;&nbsp;&nbsp;&nbsp;Glucose Galactose Malabsorption. American Journal of Physiology - Gastrointestinal and Liver Physiology 1998;275:G879-G882</li>
+
                                      <li class="list-group-item">2. &nbsp;&nbsp;&nbsp;&nbsp;Functional Properties and Genomics of Glucose Transporters. Curr Genomics. 2007;8(2): 113–128.</li>
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                                      <li class="list-group-item">3. &nbsp;&nbsp;&nbsp;&nbsp;The SLC2 (GLUT) Family of Membrane Transporters. Mol Aspects Med. 2013;34(0): 121–138.</li>
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                                      <li class="list-group-item">4. &nbsp;&nbsp;&nbsp;&nbsp;Glucose and Glycolysis Are Required for the Successful Infection of Macrophages and Mice by Salmonella enterica Serovar Typhimurium. Infect Immun. 2009;77(7): 3117–3126.</li>
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                    <!-- REFERENCE end-->
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                <!-- SECTION which glucose...we use END -->
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                            <h3 class="btn btn-lg btn-block w3-wide" style="background-color: #0C4A7C; color: white">Gene Cloning</h3>
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                            <h4><i>Salmonella typhimurium</i> LT2 has two glucose-specific transporter systems, PTS system and sodium/glucose cotransporter. PTS system contains two subunits IIA encoded by crr and IIBC by ptsG which are assembled to a high-affinity active transporter. The other is a Na+/glucose cotransporter encoded by STM1128 that contributes to facilitated transport with lower glucose affinity. We decided to genetically engineer microbes with these two systems.</h4>
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                            <h4> In order to express the genes in E. coli for demonstration and in probiotics for proof-of-concept in a real world. We chose promoter CP29 that is a strong constitutive promoter working well in both E. coli and Lactobacillus spp1. The biobrick part, CP29-RBS-aeBlue <a href="parts.igem.org/Part:BBa_K1033280" style="text-decoration: none; color: blue">(BBa_K1033280)</a> was used and to be assembled with the transporter genes.</h4>
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  <div class="card-header"><strong style="color: #fff; letter-spacing:0.5rem">Problem 1.</strong></div>
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  <div class="card-body">
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    <h4 class="card-title"><strong style="color: #fff; letter-spacing: 0.2rem">– Optimized DNA sequences can’t be synthesized</strong></h4>
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<h4 style="color: #fff">Integrated DNA Technologies, Inc. (IDT) contributes to synthetic biology community and is kindly providing free DNA synthesis service for iGEM teams every year. We first designed the genes by optimizing the gene sequence for expression in both E. coli and Lactobacillus spp. and expected to acquire gene synthesis from IDT. </h4>
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<h4 style="color: #fff">Three weeks passed, IDT has tried hard but not made the synthetic gene successfully. In the end, we knew that it’s probably because the overexpression of glucose transporter genes are somehow toxic to E. coli. Therefore, IDT can’t synthesize the genes which are linked to a strong promoter.</h4>
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    <h4 class="card-title"><strong style="letter-spacing: 0.2rem">– Amplification of genes by PCR with gDNA</strong></h4>
 
<h4> We found a way to directly clone the genes out from Salmonella. Unfortunately, Salmonella is a human pathogen and classify as Biosafety Level 2 agents. First of all, we check the virulence factors (e.g., invasion/adhesion proteins, fimbriae, flagella, type I and III secretion systems)<sup>2</sup> and confirm the glucose transporter genes are out of the list.</h4>
 
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  <h4>We sought <a href="https://2017.igem.org/Team:Mingdao/Collaborations" style="text-decoration: none; color: blue">collaboration</a> with other iGEM teams to got the genes. Luckily, the place of iGEM team CSMU_NCHU _Taiwan is just near our school campus and working in a lab with the materials of Salmonella. They helped us amplify the genes of crr, ptsG and STM1128 by PCR using genomic DNA of Salmonella typhimurium LT2 as template (the gDNAs are recognized as Biosafety Level 1 agents, according the information provided by <a href = "https://www.atcc.org/Products/All/700720D-5.aspx" style="text-decoration: none; color: blue">ATCC</a>). </h4>
 
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  <h4> Now we could move forward with the PCR-amplified DNA fragments of glucose transporter genes of Salmonella. </h4>
 
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  <h3>Time</h3>
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  <h3><strong>9/11</strong></h3>
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  <h3>Location</h3>
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  <h3><strong> McDonald's</strong></h3>
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  <h3>Consultant</h3>
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  <h3><strong> Nutritionist Liu Guan-Ling</strong></h3>
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<h4 class="card-title"><strong style="color: #fff; letter-spacing: 0.2rem"> – Promoter was gone in the recombinant DNA</strong></h4>
 
<br>
 
<h4 style="color: #fff">We soon assembled RBS-crr and RBS-ptsG to Double terminator/pSB1C3 (BBa_B0015) to make RBS-crr-RBS-pstG-TT/pSB1C3, so did to RBS-STM1128 to make RBS-STM1128-TT/pSB1C3. But something unexpectedly was happening in the next step.</h4>
 
<h4 style="color: #fff">We are unable to assemble both of the transporter composite parts with Double terminator under CP29 promoter.</h4>
 
<h4 style="color: #fff">  A paper demonstrated growth inhibition by elevated transport of sugar phosphates in E. coli with overexpression of a glucose transporter (uhpT) gene3. Sugar phosphates transported through the transporter directly enter into glycolytic pathway resulting in the accumulation of toxic metabolite, methylglyoxal which causes the bacterial growth inhibition or cell death. It could also occur in our situation.</h4>
 
<h4 style="color: #fff"> Although different and regulated promoters like PBAD or Plac could save our gene cloning, we still continued to focus on the CP promoter because a feasible promoter working both on E. coli and Lactobacilus spp. and easily applied to industrial manufacture without addition of any chemicals (inducers) are what we want.</h4>
 
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<h4> Based on the fact that excess glucose entering bacterial cell at a time stresses the survival of E. coli, we were working in other strategies or with substitutes as energy source.</h4>
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<h4> First, we tried to use agar plates made of M9 minimal salt media with a series of reducing concentration of glucose (i.e, 20mM, 10mM, 5mM, 2.5mM, 1.25mM, 0mM). The results showed that the colonies formed are either carrying CP29 promoter only or containing RBS and transporter genes without any promoters.</h4>
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<h4>Secondly, we learned that MacConkey  broth replace glucose with lactose for fermentation studies. We transformed E. coli with recombinant DNAs and grew them on MacConkey agar plate. We screened dozens of colonies by PCR and luckily found one containing CP29-RBS-aeBlue-RBS-crr-RBS-ptsG/pSB1C3. The plasmids were extracted and checked with restriction enzyme, as well as further confirmed by sequencing.</h4>
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<h4>Finally, we thought another carbon sources in addition to glucose and lactose. This time, M9 media with glycerol were used.  Luckily again, one colony carrying CP29-RBS-aeBlue-RBS-STM1128 was picked up by us. And we’ve check it with PCR, restriction enzyme and sequencing. </h4>
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<h4>For more gene cloning detail, please go to our<a href = "https://2017.igem.org/Team:Mingdao/Part_Collection" style="text-decoration: none; color: blue"> PARTS </a>section. </h4>
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                                      <li class="list-group-item w3-wide" style="text-align: center"><strong>- REFERENCE -</strong></li>
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                                      <li class="list-group-item">1. &nbsp;&nbsp;&nbsp;&nbsp;The Sequence of Spacers between the Consensus Sequences Modulates the Strength of Prokaryotic Promoters. Appl Environ Microbiol. 1998;64(1): 82–87.</li>
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                                      <li class="list-group-item">2. &nbsp;&nbsp;&nbsp;&nbsp;Salmonella – the ultimate insider. Salmonella virulence factors that modulate intracellular survival. Cell Microbiol. 2009;11(11): 1579–1586.</li>
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                                      <li class="list-group-item">3. &nbsp;&nbsp;&nbsp;&nbsp;Two mechanisms for growth inhibition by elevated transport of sugar phosphates in Escherichia coli. J Gen Microbiol. 1992;138(10):2007-14.</li>
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  When visiting the fitness coach, he suggested that we also consult a nutritionist, assuming that the answers agreed by different professions may be somewhat different. Based on the recommendations of the fitness coach, we found a nutritionist from Cheng Ching Hospital, hoping to get the answer that is beneficial to our project.
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<li> Processed sugar intake accounted for a person's daily calories required 10% </li>
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<li> Excessive diet can hurt the body</li>
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<li> The amount of calories required for a day minus about 400 calories is the most appropriate calorie needed for dieting</li>
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<li> Fat is also one of the main causes of obesity</li>
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<li> Note the control of blood sugar</li>
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  <strong>Conclusion :<br></strong>
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  After this interview, we found that the point of discussion nutritionist and fitness coach stand are similar in many ways : for instance, going on diet should not be excessive, controlling  food and drink is important. These are complementary to what we want to do. This interview also let us adjust our project in order to support the public in pursue of a healthy and better life.
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                            <h4 style="font-color: #a6a6a6;">To measure glucose uptake by the engineered E. coli expressing PTS system or Na+/glucose cotransporter, the bacteria were cultured in LB broth supplemented with 34μg/ml of chloramphenicol at 37°C overnight. The next day, the bacterial culture was adjusted to OD<sub>600</sub> = 3 and exchanged with M9 minimal media with 20mM of glucose for 4 hours or at different time points.</h4>
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<h4>Glucose concentration was analyzed with Glucose (HK) Assay Kit (Sigma-Aldrich) according to the manufacturer’s instruction. Briefly, glucose was phosphorylated (G6P) by hexokinase. Then G6P was further catalyzed by G6PDH and the reduced NAHD was formed from the oxidation of NAD, resulting in increasing in absorbance at 340 nm.</h4>
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<h4>Science, not only the lab, but into into the public</h4>
<h4>As shown in Fig. 3, the growth of E. coli expressing the PTS reporter (i.e., crr and ptsG genes) was seriously retardant. As I mentioned earlier, the E. coli overexpressing glucose transporter may lose viability because of the toxic metabolites produced in glycolytic pathway. Not surprisingly, the PTS overexpression bacteria was almost unable to absorb glucose. </h4>
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<span style="padding-left: 6rem"><strong>Fig 3. The cell growth overnight and glucose uptake of E. coli expressing the PTS transporter in 4 hours </strong></span>
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  <h4>Time:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;9/16</h4>
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  <h4>Location:<br>&nbsp;&nbsp;&nbsp;Taichung City</h4>
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  <h4>Participants:<br> The public</h4>
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<h4>Fig. 4 represented that the cell growth of E. coli expressing the Na+/Glucose transporter was comparable and even slightly higher than the control group. The glucose began to be absorbed at the 3rd hour. The glucose uptake efficiency was achieved upto 97% in Na+/Glu group and greater than in control group with 1.2 times difference.</h4>
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<strong style="padding-left: 6rem">Fig 4. The cell growth overnight and glucose uptake of E. coli expressing the Na+/Glu transporter at different time point</strong>
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<h4>We’ve successfully genetically engineered E. coli expressing high-affinity active PTS transporter system and low-affinity facilitated Na+/glucose cotransporter system by screening in MacConkey and glycerol agar plate with chloramphenicol, respectively. Our data is consistent with the previous study that overexpressing glucose transporter genes do really harm E. coli partly due to disturbing glycolytic pathways.</h4>
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<h4>PTS expressing bacteria grew difficultly in LB broth but Na+/glucose transporter expressing bacteria grew comparably with general E. coli, suggesting that high-affinity active transporter did interact with sugar-related substances in LB culture media and harm the bacterial survival.</h4>
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<h4>In our results, glucose absorption by Na+/glucose transporter expressing bacteria was achieved to 97% after 4 hours with 1.2 times enhanced efficiency compared to the normal E. coli. To further increase the rate of glucose uptake, one may think about the glucose metabolism or conversion to other materials when entering into the cell.</h4>
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  <strong>The Poll :</strong>
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  Although we are in such an era that information technology develops rapidly, the interaction between person and person is still very important.  Owing to this, we decide to make a poll and ask them people questions. During this activity, we met different kinds of people, and most of them were curious about our project and its procedure, some of them even asked whether this product will go public or not. 
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  What impressed us the most is that we met our seniors when he was giving out free hugs. He gave each of us a hug, which is an encouragement to us. The mutual aid like this is the value that we want to put stress on and convey.) Although there were some people who didn’t coordinate, instead of feeling upset, we remained optimistic and searched for another subject. In the end, we got nearly a hundred opinions on our project. This not only made our data more detailed, but also gave us the power to move forward.
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<h4>We choose Taichung Train Station, National Science Museum, CMP block museum of arts, Taichung City Hall, Shin Kong Mitsukoshi, Maple Garden, and National Taichung Theater to make the poll.</h4>
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  <h3>S&amp;T Month</h3>
                        <h3>
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  <h4>Time:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;5/22, 23, 25</h4>
                            Imagine an undercover agent exposing his id, who is going to commit suicide by taking a poisonous substance. What components in the substance could be and in what situation the agent would trigger the suiciding process.
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  <h4>Location:<br>&nbsp;&nbsp;&nbsp;Lecture Hall &amp; Bio-Lab</h4>
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  <h4>Participants:<br> Mingdao students</h4>
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  <h3 style="text-align: center"><i>iGEM in Campus!</i></h3>
                            Back to the view of a microbial cell, normally, a cell has a programmed suicide or defending mechanism to response to unfavorable environments or to outcompete other organisms.
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<h4>Lysis gene [<a href="http://parts.igem.org/Part:BBa_K117000" style="text-decoration: none; color: blue">BBa_K117000</a>] created by <a href="https://2008.igem.org/Team:NTU-Singapore" style="text-decoration: none; color: blue">NTU-Singapore</a> in 2008 encodes Lysis protein which could not only lyse bacterial cell membrane but also activate the endonuclease of Colicin E7 (ColE7). The lysis-colicin is one class of bacteriocins which are produced to response to worsening environmental conditions and outcompete other bacteria<sup>1</sup></h4>
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<h4>NucA [<a href="http://parts.igem.org/Part:BBa_K1159105" style="text-decoration: none; color: blue">BBa_K1159105</a>] created by <a href="https://2013.igem.org/Team:TU-Munich" style="text-decoration: none; color: blue">TU-Munich</a> in 2013 from Staphylococcus aureus produces a thermostable exo- and endo-nuclease that is able to degrade genomic DNAs<sup>2</sup>. NucA also has a role in the cleavage of extracellular DNAs and preventing biofilm formation. </h4>
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<h2 style="color: white">S&amp;T month</h2>
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<li style="letter-spacing: 0.15rem">Pcar, synthetic promoter repressed by CRP [<a href="http://parts.igem.org/Part:BBa_K861171" style="text-decoration: none; color: blue">BBa_K861171</a>]</li>
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  <strong>S&amp;T Month</strong> is a tech activity hold by Mingdao annually. In the period time of five weeks, teachers and students trained in Physics, Chemical, Earth science, Biology and iGEM lead the other students to have an inside look into the world of science. 2017 Mingdao Team arranged two days of experiment and one day of a lecture. It is because iGEM still remains unfamiliar to them that the registration is quite enthusiastic. Such an optimistic start it is our campaign on iGEM has.  
<li style="letter-spacing: 0.15rem">RBS + PhlF repressor + terminator [<a href="http://parts.igem.org/Part:BBa_K1725041" style="text-decoration: none; color: blue">BBa_K1725041</a>]</li>
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<li style="letter-spacing: 0.15rem"> PhlF repressible promoter + strong RBS + GFP [<a href="http://parts.igem.org/Part:BBa_K1725001" style="text-decoration: none; color: blue">BBa_K1725001</a>]</li>
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<h4> In our case of sugar hijacking, ideally, the tiny, living “agents” are supposed to kill themselves in the story to make a happy ending. Therefore, we introduced a glucose responsive elements and a repressor circuit to be connected to suicide genes (lysis and NucA).</h4>
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The first experiment is plasmid DNA extraction. After explaining the concept of it, we divided them into six groups, and chose a leader from our team members for every group. Most of the students had never used pipette before, which made them tense but eager to try. After all, what we students usually use are always droppers, beakers…and so on. 
<h4> Promoter Pcar [<a href="http://parts.igem.org/Part:BBa_K861171" style="text-decoration: none; color: blue">BBa_K861171</a>] is a glucose responsive promoter created by <a href="https://2012.igem.org/Team:WHU-China" style="text-decoration: none; color: blue">WHU-China</a> in 2012. Pcar promoter region was de novo  designed with overlapping of CRP and RNA polymerase binding site. The initiation of transcription by RNA polymerase may be hindered by the binding of CRP, which occurs at the formation of cAMP-CRP complex in the low concentration of glucose. In other words, when the amount of glucose is high enough, Pcar would be turned on after the leaving of CPR due to the low concentration of cAMP, and vice versa. </h4>
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<br>
<h4>PhlF repressor system contains the repressor PhlF [<a href="http://parts.igem.org/Part:BBa_K1725041" style="text-decoration: none; color: blue">BBa_K1725041</a>] and the PhlF repressible promoter [<a href="http://parts.igem.org/Part:BBa_K1725001" style="text-decoration: none; color: blue">BBa_K1725001</a>] created by <a href="https://2015.igem.org/Team:Glasgow" style="text-decoration: none; color: blue">Glasgow</a> in 2015. PhlF could repress GFP fluorescence intensity by 83-fold according to the study of Glasgow’s work. </h4>
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    During the experiment day, we showed them our newly-opened-up lab and had them take turn operating at the same time. They all felt it cool and funny to extract the plasmid, and showed more interest in the experiment, electrophoresis, the next day. Not only did they ask questions enthusiastically, but they were more skilled because of the practices the day before.
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  As for the lecture on the third day, we told them more about what exactly Molecular biology is, and we invited a senior who had engaged in iGEM last year shared his experience and what he learned in iGEM. 
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This activity gives middle school students a basic idea of Molecular biology. Moreover, it helps increase iGEM’s popularity as well. It is really killing two birds with one stone. 
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  <h4 class="card-title"><strong style="letter-spacing: 0.2rem">Glucose responsive repressor device</strong></h4>
 
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<h4>We’ve innovated this year a novel glucose responsive repressor system (Pcar-wRBS-PhlF-T-Pr-sRBS-GFP/pSB1C3 [BBa_K2230012]) by connecting these two system and extend the function of them.</h4>
 
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<h4>Please go to DEMONSTRATION section below to check the function of this device in our experimental results.</h4>
 
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                                      <li class="list-group-item w3-wide" style="text-align: center"><strong>- REFERENCE -</strong></li>
 
                                      <li class="list-group-item">1. &nbsp;&nbsp;&nbsp;&nbsp;Amount of colicin release in Escherichia coli is regulated by lysis gene expression of the colicin E2 operon. PLoS One. 2015;10(3):e0119124.</li>
 
                                      <li class="list-group-item">2. &nbsp;&nbsp;&nbsp;&nbsp;Characterization of a nuclease produced by Staphylococcus aureus. J Biol Chem. 1967;242(5):1016-20.</li>
 
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<h3 class="btn btn-lg btn-block w3-wide" style="background-color: #0C4A7C; color: white; margin-top: 3rem; margin-bottom: 3rem">Gene Cloning</h3>
 
<h4 style="padding: 0 5rem 0 5rem">Our final composite parts (device) were listed in the table below. The basic and composite parts composed of the devices were briefly described in the following. </h4>
 
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  <a class="list-group-item bg-secondary" id="list-home-list" role="tab" aria-controls="GRP" style="text-decoration:none; letter-spacing: 0.15rem"><b style="color: #fff; font-size: 1.5rem">NAVIGATION</b></a>
 
  
  <a class="list-group-item bg-dark list-group-item-action active" id="list-GRR-list" data-toggle="list" href="#list-GRP" role="tab" aria-controls="GRP" style="text-decoration:none; color: #fff"><i class="fa fa-bookmark" aria-hidden="true"></i>&nbsp;&nbsp;&nbsp; Glucose Responsive Promotor</a>
 
  
  <a class="list-group-item bg-dark list-group-item-action" id="list-RRP-list" data-toggle="list" href="#list-RRP" role="tab" aria-controls="RRP" style="text-decoration:none; color: #fff"><i class="fa fa-bookmark" aria-hidden="true"></i>&nbsp;&nbsp;&nbsp; Repressor &amp; Respressible Promotor</a>
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  <a class="list-group-item bg-dark list-group-item-action" id="list-SG-list" data-toggle="list" href="#list-SG" role="tab" aria-controls="SG" style="text-decoration:none; color: #fff"><i class="fa fa-bookmark" aria-hidden="true"></i>&nbsp;&nbsp;&nbsp; Suicide Genes</a>
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  <h3>Elementary School</h3>
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  <h4>Time:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;9/22</h4>
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  <h4>Location:<br></h4><h5>Chiao-Jen Elementary School</h5>
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  <h4>Participants:<br> Kids</h4>
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  <h3 style="text-align: center"><i>Sow Seed of Science</i></h3>
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  <a class="list-group-item bg-dark list-group-item-action" id="list-procedure-list" data-toggle="list" href="#list-procedure" role="tab" aria-controls="procedure" style="text-decoration:none; color: #fff"><i class="fa fa-bookmark" aria-hidden="true"></i>&nbsp;&nbsp;&nbsp; Procedure</a>
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  <h3 style="letter-spacing: 0.2rem"><b>Glucose Responsive Promoter</b></h3>
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  <h4>In addition to Pcar [BBa_K861171], a modified version with correction of -10 position in the promoter region, named PI, give the promoter stronger activity and a weaker CRP interaction. The PI promoter [BBa_K861170] was used as a major part in the work of team NCKU_Tainan in 2016. These two parts have been used in our work. The reporter either RFP or aeBlue under this kind of promoters were cloned onto pSB1A3 vectors.</h4>
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<h2 style="color: white">Elementary School Promotion</h2>
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    After S&amp;T Month, we decided to extend our educate range to elementary school students. To let more people know the spirit of iGEM, we went to an elementary school, Chiao-Jen, to teach students there some basic concept of synthetic biology and introduce iGEM to them.
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  <h4> RBS + PhlF repressor + terminator [BBa_K1725041] was used as the DNA template for PCR. PhlF repressible promoter + strong RBS + GFP [BBa_K1725001] or PhlF repressible promoter + weak RBS + GFP [BBa_K1725002] were assembled followed by the RBS-PhlF-Terminator.</h4>
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     We prepared a game for them and a bag of candy as reward, making it easier to understand what we want to express. Every team had one million dollars to invest in the genetically modified product. In the meanwhile, we mixed some fundamental idea of the synthetic biology into the game. Then, we explained the relationship between DNA and gene briefly. To our surprise, there was even a little boy asking us our opinion on GMO foods! 
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<h4> Lysis gene [BBa_K117000] with weak or strong RBS was assembled followed by RBS-PhlF-T-RBS-Pr (repressible promoter)-strong RBS-GFP. And NucA [BBa_K1159105] with strong RBS was followed by the Lysis gene.</h4>
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<h3><b class="text-danger" style="letter-spacing: 0.3rem"><< MORE</b></h3>
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  In this activity, we find It is the passionate interaction students react to you that what the most enjoyable moment of teaching is.  It was their passionate participation that made this activity succeed.
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    <h3 style="letter-spacing: 0.2rem"><b>Procedure</b></h3>
 
<h4>Except mentioned in the coming Problems and Troubleshoots, the cloning strategy was following the standard BioBrick assembly rule. The inserts may be isolated from BioBricks vector  by gel extraction or directly amplified products by PCR with high-proofreading DNA polymerase.</h4>
 
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<h3>Drink Sampling</h3>
      <h4 class="card-title"><strong style="color: #fff; letter-spacing: 0.2rem">– BioBricks are unvailable</strong></h4>
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<h4>Time:&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;10/3</h4>
  <br>
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<h4>Location: <br></h4><h5>Mingdao High School</h5>
  <h4 style="color: #fff">The part of PI promoter was not in stock. Therefore, we are unable to request from iGEM HQ. We asked and got the plasmid DNA from team NCKU_Tainan. But unfortunately, we can’t re-transform <i>E. coli</i> with materials we got from them.</h4>
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<h4>Participants:<br></h4><h5>Mingdao staff and students</h5>
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<h3 style="text-align: center"><i>Just Drink It!</i></h3>
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    <div class="card-header" style="background-color: #00477E"><strong style="color: #fff; letter-spacing:0.5rem">Trouble-shooting 1.</strong></div>
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      <h4 class="card-title"><strong style="letter-spacing: 0.2rem">– Synthesis of promoter sequences on primers</strong></h4>
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  <h4> It’s good news that the glucose responsive promoter region contains only 36 bp (PI and Pcar). Therefore, we designed the sequences on the forward primer. The cloning was going smoothly in the following process. And DNA sequences are all confirmed by sequencing.</h4>
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  <h4 class="card-title"><strong style="color: #fff; letter-spacing: 0.2rem">– The part of lysis gene was flanked by a wrong BioBrick Prefix </strong></h4>
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        <h2 style="color: white">Drink Sampling</h2>
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  <h4 style="color: #fff">We’ve finished the gene cloning for lysis genes. Unfortunately, according to our sequencing data, we found a mistake that the previous team added the wrong Prefix in front of the part. The part starts with ATG, but unfortunately, the team took the wrong Prefix “for all the other parts”.</h4>
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    <div class="card-header" style="background-color: #00477E"><strong style="color: #fff; letter-spacing:0.5rem">Trouble-shooting 2.</strong></div>
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      <h4 class="card-title"><strong style="letter-spacing: 0.2rem">– PCR using a primer with correct Prefix</strong></h4>
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  <h4> We designed new primers with the correct Prefix “for the coding region parts” along with a strong RBS / a weak RBS, and performed PCR to get the part. This approach successfully solved the previous problem we met.
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  In order to know whether sweet foods are more favored by the public, we held an event in school, called “Drink sampling”. 
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We made the statistic this way: We offered both sugar-free and sugary beverages. There were buckets placed beside each beverage pail. First, the participants were given two cups of drinks from each pail. They were asked to decide which one they like, and toss both of their cups into the correspondent bucket. At last, we sum up the cups in each bucket to find out the result.
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<h4 style="padding-left: 3rem">First of all, we’d like to know how glucose responsive promoters (i.e., PI and Pcar) are induced in response to different concentration of glucose (GROUP 1) as shown in in Fig. 1. RFP intensity will be represented as promoter activity and measured at Ex/Em = 584nm/607nm.</h4>
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         There are also games to attract more people. It’s a shame that we weren’t able to elaborate the process of our project to every participant due to the chaos, but, it is sure that we’ve not only increased public’s attention on both our project and IGEM but also successfully introduced more people into the domain of gene engineering. 
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<h4 style="padding-left: 3rem">Secondly, the glucose responsive repressor system (GROUP 2) will be tested in response to various concentration of glucose. GFP intensity will be measured at Ex/Em = 488nm/518nm as reporter showing the response of repressible promoter in the presence of glucose.</h4>
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<strong>Here are the two opinions after the events :</strong>
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<blockquote>Student A :<br>
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This time, the member of Mingdao iGEM 2017 hold a activity - drink sampling, which done the survey and the endorsement at the same time. I think the activity is great because the main goal of iGEM is to satisfied people's requirements after finding it, and the objective of genetic engineering is to make people's life more convenient. By the way, the drink taste better with sugar in most people's opinion.
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<h4 style="padding-left: 3rem">Finally, the glucose responsive suicide circuit (GROUP 2) will be examined in response to decreasing concentration of glucose. OD<sub>600</sub> and cell numbers will be calculated to understand the killing efficacy of suicide circuit in the loss of glucose. </h4>
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<blockquote>Student B :<br>
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Although I’m not one of the members of the IGEM team, I still learn a lot from the course concerning this project. During the preparation, I saw some previous souvenir, which makes me wonder what kind of surprise they will bring us this time. First, they asked us to drink some beverages. Some were normal and some were sugar-free. This really confused me. Then, they asked us which one we preferred. I thought that they were doing some research to study the dietary habit of Mingdao students. Though didn’t participate in the game they play later on, I could surely feel the hard work they put into carrying out this project. You guys really did a good job. I sincerely hope that this activity can benefit your experiment. But, I suggest that next time the activity could be more simplified, or you can try walking instead of standing at a particular place! 
<h4 style="padding-left: 3rem">The bacteria carrying the indicated vector were cultured in LB media supplemented with 34 μg/ml of chloramphenicol (Cm) at 37°C overnight. The next day, OD<sub>600</sub> was measured and adjusted to 2.5 in M9 minimal media with various concentrations of glucose. The bacteria then were incubated for 4 hours at 37°C. RFP, GFP or OD<sub>600</sub> were indicators of promoter activities as mentioned. For suicide assay, the culture media were taken out and diluted 10<sup>6</sup> times following by spreading onto LB Cm agar plate at 37°C overnight. The third day, the numbers of colonies were counted and bacterial viability was calculated.</h4>
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<span class="w3-center w3-wide w3-padding-large w3-xlarge w3-animate-opacity">Result</span>
 
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                      &nbsp;&nbsp;&nbsp;Glucose responsive promoter activity
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<h4 style="padding-left: 3rem">The result shown in Fig. 2 indicated that PI promoter has significant activity in LB culture media. However, the activity of Pcar promoter is greater than negative control but much smaller than PI and positive control. It’s consistent with the properties of PI and Pcar promoters just mentioned previously in GENE CLONING section and described previously in Part Resgistry [Part: BBa_K861170] by team WHU-China in 2012 who designed the promoters.</h4>
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<h4 style="padding-left: 3rem"> In our experiment as presented in Fig. 3, PI and Pcar promoters just responded to various concentrations of glucose with a  very slight dose-dependent increase. This phenomenon didn’t correspond to the data provided by team WHU-China in 2012 and team NCKU_Tainan in 2016. Maybe our measurement was not in an optimized condition. Or the reporter of RFP activity was not sensitive enough to respond this difference.</h4>
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        &nbsp;&nbsp;&nbsp;Glucose Responsive Suppressor System
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<h4 style="padding-left: 5rem"> In the assay for repressor system, the data in Fig. 4 gave the similar results as team Glasgow did in 2015, in which the strong activity of the repressible promoter was significantly repressed in the presence of PhlF repressor.</h4>
 
  
<h4 style="padding-left: 5rem">Furthermore, we modified the expression of PhlF under the glucose responsive promoter (Pcar-PhlF-T-Pr-GFP/pSB1C3 [BBa_K2230012]). And the E. coli carrying this plasmid cultured in LB broth overnight was transferred to  M9 minimal media with decreasing concentrations of glucose. The result in Fig 5 clearly indicated that the GFP activity driven by the repressible promoter was gradually increased in response to the loss of glucose to 1.88 folds compared to the initial GFP activity at the beginning culture in M9 media, suggesting that the level of expression of PhlF was positively corresponding to the concentration of glucose.</h4>
 
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  &nbsp;&nbsp;&nbsp;Glucose responsive suppressor suicide circuit
 
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<h4 style="padding-left: 3.5rem">To achieve our goal, we added the suicide genes of lysis and NucA in the back of GFP (Pcar-PhlF-T-Pr-GFP-Lysis-NucA/pSB1C3 [BBa_K2230017]) which are controlled under the same repressible promoter and hope to see the activity of suicide genes could respond against the presence of glucose.</h4>
 
<h4 style="padding-left: 3.5rem">As you can see in Fig 6., the OD value in response to the decreasing concentration of glucose was gradually reduced to 1.89 much less than average 2.71 in control group without suicide gene expression, implying that the suicide proteins killed the cells in the loss of glucose in the environment. Moreover, when the bacteria were grown in M9 media with 0.5mM glucose for 4 hours, the survival rate was decreased to 34% compared to 56% of bacteria without suicide genes (Fig. 7). And the cell numbers were reduced to 671 compared to 1120 of bacteria without suicide genes. Both data confirmed that this suicide device works well and indicated that killing process began when glucose in the media was running out.</h4>
 
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<h4>Glucose responsive promoters can drive RFP but respond slightly in the increasing concentration of glucose in M9 minimal media.  However, the device of repressor system works well in response to increasing concentration of glucose which controls the level of expression of PhlF repressors through glucose responsive promoter. The difference responses between the devices may result from the sensitivity of RFP and GFP or the experimental conditions.</h4>
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<h4>The suicide circuit connected the combination of repressor system and glucose responsive promoter were successfully demonstrated in response to the presence of glucose in the environment. We not only confirmed the data of iGEM previous work but also improve the existing parts by extending the function and application of biobricks.</h4>
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<h4 class="card-title"><strong style="letter-spacing: 0.2rem">Probiotics in health</strong></h4>
 
<h4> To develop food supplements by biological engineering, the host to be engineered needs very carefully to be considered. Probiotics have gained great interest as health benefit. Probiotics not only play a role as immune modulatory in treating allergy or autoimmune disease, but also modulate the gut microbiota in the treatment of metabolic syndrome, obesity and diabetes<sup>1</sup>. </h4>
 
<br>
 
<h4 class="card-title"><strong style="letter-spacing: 0.2rem">What iGEMers have done</strong></h4>
 
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<h4> Probiotics are human friendly and have been used as hosts for many iGEM teams based on the properties of (1) safety, they are natural and exist in your gut and many foods, (2) benefits, they can improve health and prevent disease, and (3) acid resistance, they can pass through gastric acid and reside in your gut.</h4>
 
<h4>They have been applied in previous iGEM projects as <strong>food supplements</strong> (<a href="https://2009.igem.org/Team:uOttawa" style="text-decoration:none; color: blue;">uOttawa: 2009</a> for cellulose; <a href="https://2013.igem.org/Team:Uppsala" style="text-decoration:none; color: blue;">Uppsala: 2013</a> for nutritional compounds; <a href="https://2016.igem.org/Team:UCL" style="text-decoration:none; color: blue;">UCL: 2016</a> for antioxidant), as <strong>cures for metabolic intolerance</strong> (<a href="https://2008.igem.org/Team:Caltech" style="text-decoration:none; color: blue;">Caltech: 2008</a> for lactose; <a href="https://2009.igem.org/Team:UC_Davis" style="text-decoration:none; color: blue;">UC_Davis: 2009</a> for gluten; <a href="https://2016.igem.org/Team:Tuebingen" style="text-decoration:none; color: blue;">Tuebingen: 2016</a> for fructose; <a href="https://2014.igem.org/Team:UIUC_Illinois" style="text-decoration:none; color: blue;">UIUC Illinois: 2014</a> for theobromine in puppies), to <strong>fight diseases</strong> (<a href="https://2009.igem.org/Team:Stanford" style="text-decoration:none; color: blue;">Stanford: 2009</a> for autoimmune disorders; <a href="https://2012.igem.org/Team:Trieste" style="text-decoration:none; color: blue;">Trieste: 2012</a> for antimicrobial peptide; <a href="https://2013.igem.org/Team:UIUC_Illinois" style="text-decoration:none; color: blue;">UIUC_Illinois: 2013</a> for cardiovascular disease; <a href="https://2014.igem.org/Team:UT-Dallas" style="text-decoration:none; color: blue;">UT-Dallas: 2014</a> for infectious diseases; <a href="https://2016.igem.org/Team:Oxford" style="text-decoration:none; color: blue;">Oxford: 2016</a> for Wilson’s disease), and to <strong>treat or prevent cancer</strong> (<a href="https://2013.igem.org/Team:Arizona_State" style="text-decoration:none; color: blue;">Arizona_State: 2013</a> for vaccine delivery system; <a href="https://2013.igem.org/Team:ATOMS-Turkiye" style="text-decoration:none; color: blue;">ATOMS-Turkiye: 2013</a> for cancer therapy; <a href="https://2016.igem.org/Team:UPF-CRG_Barcelona" style="text-decoration:none; color: blue;">UPF-CRG_Barcelona: 2016</a> for colorectal cancer prevention). </h4>
 
<h4>Nevertheless, in reality, the major of the projects just worked on E. coli as a proof-of-concept demonstration and still have difficulties to engineer real probiotic strains. </h4>
 
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<h4 class="card-title"><strong style="letter-spacing: 0.2rem;">Chassis &amp; Engineering Platform</strong></h4>
 
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<h4><em>Escherichia coli</em> Nissle is a nonpathogenic <em>E. coli</em> strain used by some of iGEM teams. The strain was isolated in 1917 by Alfred Nissle and used as probiotics in clinical trials for many gastrointestinal disorders<sup>2</sup>. However, they don’t have any benefitical properties like natural probiotics like lactic acid bacteria.</h4>
 
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<h4><em>Lactobacillus plantarum, Lactobacillus johnsonii</em> and <em>Lactobacillus acidophilus</em> have been mentioned or tried to engineer in few iGEM projects. But there’s no evidence to show how they achieve.</h4>
 
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<h4>Uppsala successfully engineered <em>Lactobacillus reuteri</em> in 2013. They developed the shuttle vectors based on pSB4C15, in which the replication origin was changed with a broad range replicon from the plasmid pJP059.  In addition, they also collected a series of useful biobricks working in probiotics including promoters and antibiotic resistance cassette. The promoter CP29 and erythromycin resistance gene were taken in our project.</h4>
 
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<h4>TMMU_China is another iGEM team to successfully engineer the probiotic, <em>Lactococcus lactis</em>. Although they demonstrated the method and transformed Lactococcus, they didn’t create any BioBrick parts working on transforming the probiotic.  </h4>
 
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<br>
 
<h4 class="card-title"><strong style="letter-spacing: 0.2rem">Our Approach</strong></h4>
 
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<h4>      We have genetically engineered a probiotic which stably expresses the genes of interest. Based on the Uppsala’s method, the probiotic was transformed with shuttle vectors and selected by antibiotics. The bacteria have to maintain the plasmids in the pressure of the existence of antibiotics. Further, the concerns may be addressed with the possibilities of horizontal antibiotic gene transfer. </h4>
 
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<h4><em>Lactobacillus acidophilus</em> exists in your gut and is one of the most common probiotics added to your food supplements. <em>Lactobacillus acidophilus</em> strain NCFM has been produced and applied to commercial products and studied in many scientific papers including available full genome sequence information<sup>3</sup>. In addition, we could obtain them from a local Bioresource Collection and Research Center in Taiwan. Therefore, we decided to choose <em>Lactobacillus acidophilus</em> NCFM as our chassis. </h4>
 
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<h4>Chromosomal integration are stable for the engineered strain to express heterologous genes. We’d like to design and create the BioBrick vectors for transforming probiotics by inserting genes on chromosome through homologous recombination. </h4>
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  <li class="list-group-item w3-wide" style="text-align: center"><strong>- REFERENCE -</strong></li>
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  <div style="padding-left: 8rem">
  <li class="list-group-item" style="color: black;">1. &nbsp;&nbsp;&nbsp;&nbsp;Some current applications, limitations and future perspectives of lactic acid bacteria as probiotics. Food Nutr Res. 2017;61(1):1318034</li>
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  <br>
  <li class="list-group-item" style="color: black">2. &nbsp;&nbsp;&nbsp;&nbsp;Role and mechanisms of action of Escherichia coli Nissle 1917 in the maintenance of remission in ulcerative colitis patients. World J Gastroenterol. 2016;22(24): 5505–5511.</li>
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  <h3>Food and Drug Administration</h3>
  <li class="list-group-item" style="color: black">3. &nbsp;&nbsp;&nbsp;&nbsp;Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc Natl Acad Sci U S A. 2005;102(11):3906-12</li>
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  <h4>Time : 9/27</h4>
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  <h4>Location : TFDA Office Building</h4>
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  <h4>Participant : Section Manager Zhou </h4>
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<h3 class="btn btn-lg btn-block w3-wide" style="background-color: #0C4A7C; color: white">Gene Cloning</h3>
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  <h3>Food Industry Research and Development Institute</h3>
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  <h4>Time : 9/29</h4>
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  <h4>Location : FIRDI Research Building</h4>
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  <h4>Participant : Doctor Zhu Wen-Shen </h4>
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                            <h4 style="font-color: #a6a6a6;">To engineer <i>Lactobacillus acidophilus</i> by chromosome integration through homologous recombination, the selection of integration site is very important for successful recombination and not disturbing bacterial internal metabolism. </h4>
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                        <h4 style="font-color: #a6a6a6;"> Based on the method created by Grace L. Douglas and Todd R. Klaenhammer<sup>1</sup>, the region between <i>slpA</i> gene (LBA0169) stop codon and the terminator was chosen as the intergenic insertion location.  The gene of <i>slpA</i> encodes a surface-layer protein with a strong constitutive promoter activity, which can also drive the expression of the inserted gene. </h4>
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<h4 style="padding-left: 3rem">Fig 1. The schematic diagram of gene integration location (modified from Appl Environ Microbiol. 2011)</h4>
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<h3><b>Recombination Vector - pLBA169</b> </h>
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<h4>To make pLBA169, the downstream region of LBA0169 and the upstream region of the terminator were amplified by PCR. Then, the two PCR-amplified DNA fragments were ligated to pSB1C3 by tripartite ligation. </h4>
+
<h4>Next, CP29-RBS-aeBlue was cut from Part: BBa_K1033280. And this gel isolated DNA fragment was further inserted between two recombination regions on pSB1C3. This process created the standard EcoRI-XbaI-PART-SpeI-PstI assembly position.</h4>
+
<h4>To delete the extra SpeI recognition site within the one of the recombination region, we performed site-directed mutagenesis to change one nucleotide of SpeI recognition sequence. The final product has been confirmed by DNA sequencing.</h4>
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<h4>You can refer to the following flow chart of gene cloning of the recombination vector.</h4>
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<h3><b>Erythromycin Resistance Gene as a Selection Marker</b> </h>
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<div class="col-md-5 col-sm-4" style="margin-top: 2rem"><b>RBS-EmR-TT/pSB1C3</b></div>
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<h4>Erythromycin is a common selection marker for engineering lactic acid bacteria<sup>2</sup>. And teams Uppsala and TMMU_China were using it to select the engineered Lactobacillus with erythromycin resistant strains.  </h4>
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<h4>However, the BioBrick parts containing the erythromycin resistance gene are currently unavailable. On the other hand, iGEM HQ is unable to service the request of plasmid carrying erythromycin resistance gene. Maybe iGEM HQ can’t manipulate erythromycin resistant bacteria so far. </h4>
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<h4>Therefore, we decided to clone the erythromycin resistance gene (EmR) by ourselves. We searched the vector carrying EmR and found an iGEM team HKUST in 2010 working with it. We got the pMG36e vector from the team and cloned the EmR gene out onto pSB1C3 followed by assembling RBS (B0034) and double terminator (B0015) parts. These will provide iGEM team this resistance gene as selection marker in the future.</h4>
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<h3><b>Recombination Vector with Reporter and Selection Marker</b> </h>
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  <h3 style=" padding-right: 5rem"><strong>Introduction</strong><br></h3>
 +
  <h4 >
 +
  FDA(Food and Drug Administration) is a govenment institution. They’re responsible for the management and supervision of commercialized food and medicines. They aim to intensify the regulation and risk assessment for food, drugs, emerging technologies and cosmetics. Also, they strive to develop core examining technology to create a safe environment for customers. You can say that FDA is the goalkeeper of people’s dieting.
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<span style="padding-left: 10rem;"><strong>RBS-EmR-CP29-RBS-aeBlue/pLBA169 </strong></span>
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The first experiment is plasmid DNA extraction. After explaining the concept of it, we divided them into six groups, and chose a leader from our team members for every group. Most of the students had never used pipette before, which made them tense but eager to try. After all, what we students usually use are always droppers, beakers…and so on. 
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  <h3 style="padding-left: 5rem; padding-right: 2rem"><strong>Highlight :</strong></h3>
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  <ol>
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<li> Based on the reference from the WHO, the amount of calorie we consume from refined sugar should not exceed 10% of daily sugar intake.</li>
 +
<li>Refined sugar added in items that can be called “heath food” should not exceed 25 grams, which is half of daily sugar intake for adults. Also, items with more than 50/3 grams of refined sugar should be labeled.</li>
 +
<li>  If a product is only to be positioned to a kind of common food, it won’t be required to pass any examination procedures. But, if it is to be a health food warranted by the government, it is necessary that you pass the inspections on food additions and ingredients.</li>
 +
<li> The list of food additions that could be used is now available on the internet. Manufactures are required to hand in their examination result themselves.</li>
 +
<li> The reason why GMO products do not prevail in Taiwan is not related to the regulations. Governing ministries will only require GMO products to be labeled because some people is still suspicious about the safety problems. </li>
 +
<li>If after 5 years, a new regulation is enacted, and the standard is adjusted, we will examine the product with the new standard again.</li>
 +
<li>Before commercializing, a product could go through either human clinical trial or animal study. </li>
 +
<li> There is something needed if a product are to be commercialized:<br>
 +
(a.)&nbsp;&nbsp;&nbsp; The effect of the product must be testified
 +
<br>
 +
(b.)&nbsp;&nbsp;&nbsp; Descriptive data about:
 +
<br>
 +
- The bacterial strain used<br>
 +
- How it was grown and preserved <br>
 +
- How its DNA strand in reconstructed <br>
 +
- Whether any toxic or allergic reaction is found
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</li>
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<div class="card-header text-center"><strong style="color: #fff; letter-spacing:0.5rem;">Conclusion</strong></div>
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  <h4>
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  As students being unfamiliar with the procedure of law, we understood the inspection standard of laws about health food and GM food after interviewing the section manager, Mr. Chou, which gave us a new angle of sight to reexamine the position of our product. </h4>
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<h4>Finally, we assembled the pLBA169 vector with RBS-EmR part as a recombination vector of Lactobacillus acidophilus with the selection marker of erythromycin.</h4>
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    <div class="card-header text-center"><strong style="color: #fff; letter-spacing:0.5rem;">FIRDI - Record</strong></div>
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  <br>
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  <h4>We’ve successfully genetically engineered E. coli expressing high-affinity active PTS transporter system and low-affinity facilitated Na+/glucose cotransporter system by screening in MacConkey and glycerol agar plate with chloramphenicol, respectively. Our data is consistent with the previous study that overexpressing glucose transporter genes do really harm E. coli partly due to disturbing glycolytic pathways.</h4>
 +
  <h4>PTS expressing bacteria grew difficultly in LB broth but Na+/glucose transporter expressing bacteria grew comparably with general E. coli, suggesting that high-affinity active transporter did interact with sugar-related substances in LB culture media and harm the bacterial survival.</h4>
 +
  <h4>In our results, glucose absorption by Na+/glucose transporter expressing bacteria was achieved to 97% after 4 hours with 1.2 times enhanced efficiency compared to the normal E. coli. To further increase the rate of glucose uptake, one may think about the glucose metabolism or conversion to other materials when entering into the cell.</h4>
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    <div class="card-header text-center"><strong style="color: #fff; letter-spacing:0.5rem;">FDA</strong></div>
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  <h3 style=" padding-right: 5rem"><strong>Introduction</strong><br></h3>
 +
  <h4 >
 +
  FDA(Food and Drug Administration) is a govenment institution. They’re responsible for the management and supervision of commercialized food and medicines. They aim to intensify the regulation and risk assessment for food, drugs, emerging technologies and cosmetics. Also, they strive to develop core examining technology to create a safe environment for customers. You can say that FDA is the goalkeeper of people’s dieting.
 +
  </h4>
 +
  </div>
 
</div>
 
</div>
<!-- REFERNCE -->
+
  <h4>In our results, glucose absorption by Na+/glucose transporter expressing bacteria was achieved to 97% after 4 hours with 1.2 times enhanced efficiency compared to the normal E. coli. To further increase the rate of glucose uptake, one may think about the glucose metabolism or conversion to other materials when entering into the cell.</h4>
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  <li class="list-group-item w3-wide" style="text-align: center"><strong>- REFERENCE -</strong></li>
+
  </div>
  <li class="list-group-item" style="color: black;">1. &nbsp;&nbsp;&nbsp;&nbsp;Directed chromosomal integration and expression of the reporter gene gusA3 in Lactobacillus acidophilus NCFM. Appl Environ Microbiol. 2011;77(20):7365-71.</li>
+
</div>
  <li class="list-group-item" style="color: black">2. &nbsp;&nbsp;&nbsp;&nbsp;Genetic engineering techniques for lactic acid bacteria: construction of a stable shuttle vector and expression vector for β-glucuronidase. Biotechnol Lett. 2014;36(2):327-35.</li>
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<h3><b>Erythromycin</b> </h>
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<h4>First of all, we have to determine which concentration of erythromycin is suitable for selection of Lactobacillus. We tried to culture Lactobacillus on MRS agar plate with or without 1.25 μg/ml of erythromycin in an anaerobic environment. As the photo showed, Lactobacillus grew on MRS agar plate but can’t grow on the plate with 1.25 μg/ml of erythromycin, which is consistent with the recommended concentration for Lactobacillus selection</h4>
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<h3 class="card-text text-white">Fig 1. Lactobacillus acidophilus grew on MRS agar plate without (left) or with (right) 1.25 μg/ml of erythromycin</h3>
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<h3><b>Electroporation</b> </h>
 
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<div class="col-md-9 col-sm-12"  style="display: block; margin: auto">
 
<h4>To transform Lactobacillus acidophilus with the vector we created, we performed electroporation using BTX Gemini X2 Electroporation System. We followed the protocol provided by BTX but can’t get the recombinant strain yet. At this moment, we’re still try testing in different conditions and hope to achieve success in the future.</h4>
 
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    Summary
 
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    <h4 class="card-title w3-padding-24">
 
Sugar Crush seems an impossible mission to achieve. Ideally in our mind, the product will absorb glucose in the environment efficiently and compete with small intestine which evolutionarily adapt to take up glucose as much as possible. Secondly, the product will commit suicide after sucking up the glucose and leave the gut without sugar. Finally, the product will be harmless or even benefit human health.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
In our project this year, we’ve completed at least and submitted 28 BioBrick basic and composite parts to iGEM community in just several months. We should celebrate by ourselves that we’ve already done the impossible work.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
In all of these parts engineered by our hands, our favorite and the most exciting part is that we improved and extending the function of existing parts of glucose responsive promoter (Pcar [BBa_K861171]) and a repressor system (RBS-PhlF-T [BBa_K1725041] and PhlF repressible promoter-RBS-GFP [BBa_K1725001]). It’s useful and a proof-of -concept for our product design to demonstrate the suicide circuit is activated in the loss of glucose in the environment (Pcar-wRBS-PhlF-T-Pr-sRBS-GFP-sRBS-lysis-sRBS-NucA/pSB1C3 [BBa_K2230017]).
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
And the second is the composite parts of transporter devices (CP29-RBS-aeBlue-RBS-crr-RBS-ptsG-TT/pSB1C3 [BBa_K2230027] and CP29-RBS-aeBlue-RBS-STM1128-TT/pSB1C3 [BBa_K2230028]). We can’t assemble the promoter to drive the genes at first. We didn’t give up and continue trying research the paper and testing with various methods, although we’re advised to change with a regulatory promoter. It’s good news that it eventually comes out we got the recombinant DNA.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
The third we love is the Lactobacillus recombination vector (RBS-EmR-CP29-RBS-aeBlue/pLBA169 [BBa_K2230004]). Because we met challenges of unavailable antibiotic resistance gene and an extra site of SpeI, we overcame and tackled the obstacles by acquiring the plasmid carrying the erythromycin resistance gene with the help of iGEM team HKUST’s instructor who have used it in 2010, as well as luckily complete the site-directed mutagenesis in just one experiment.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
The fourth  we don’t actually love but appreciate our team members’ work are that the parts of glucose responsive promoters (PI [BBa_K861170] and Pcar [BBa_K861171]) ) are neither unavailable from iGEM HQ nor getting plasmids from re-transformed E. coli with the plasmid got from the previous iGEM team. We de novo designed the primer and cloned the parts on pSB1A3 (PI-RBS-RFP-T/pSB1A3 [BBa_K2230005] and Pcar-RBS-RFP-T/pSB1A3 [BBa_K2230006]).
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
We thank iGEM HQ to provide service of sending BioBrick parts which are not in the Distribution kit (actually we asked 3 times in separate times), and appreciate the favor from team CSMU_NCHU _Taiwan to amplify the genes of transporters of Salmonella for us.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
The most challenging and difficult part in our project is performing the functional assays. In testing the glucose responsive promoter in response to various concentrations of glucose, we got in trouble that we can’t repeat the data of previous iGEM works. We tried many conditions and just got slightly increasing response to the increasing concentrations of glucose. Luckily, when analyzing glucose responsive repressor system, we got the corresponding repressible response reversely proportional to the concentrations of glucose. We thought the different responses may result from the sensitivity differences between RFP and GFP. In the suicide circuit assay, it’s a beautiful data demonstrating the suicide circuit activates the killing process when running out the environmental glucose.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
In glucose uptake analysis, it is unexpected that the high-affinity active glucose transporter is the worse one for bacterial growth and glucose absorption. Compared to the normal E. coli, the one overexpressing low-affinity facilitated glucose transporter gave a 1.2 times increase and achieved 97% of glucose absorption in 4 hours. The high glucose transport at a time gave a huge stress for the bacteria, in which the toxic metabolite may accumulate due to the overloading of glycolysis pathway. To further speed up the glucose uptake within one hour, we think in the future we can plan a novel route to divert the metabolic pathway to relieve the burden.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
In iGEM team <a href="https://2009.igem.org/Team:uOttawa/Home" style="text-decoration:none; color: blue;"> uOttawa </a> in 2009, the team worked on another probiotic, Lactobacillus plantarum, to make them convert glucose to cellulose to increase dietary fibre in the gut. Although they seems to just cloned the 4 genes of cellulose synthase from Acetobacter xylium and didn’t get the engineered bacteria, we could extend their idea by combining with our glucose transporter system. Maybe it will make a big breakthrough in the food industry.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
In addition, the multifunctional vitamin C is one of the essential and important vitamins that human needs to consume from food. But other mammals could produce vitamin C by themselves because they have whole biochemical synthesis pathway that human being lacks one of them (i.e, L-gulonolactone oxidase). It is intriguing that engineering a probiotic to synthesize vitamin C in the gut will raise interest for future biotechnology. It may be included in our whole picture of engineering probiotics as good food supplements<sup>1</sup>.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
Although we’ve created the standard BioBrick vector for transforming <i>Lactobacillus acidophilus</i> with chromosome integration through homologous recombination. And we also created basic and composite parts of erythromycin resistance gene as an antibiotic selection marker for iGEM community. However, currently we have not successfully engineered Lactobacillus with this vector yet. Based on the paper where the recombination regions were designed, we’re confident and hope that by us or other iGEM teams in one day, transforming probiotics become a standard procedure in addition to <i>E. coli</i> and <i>Bacillus subtilis</i> in synthetic biology field and the iGEM community.
 
</h4>
 
<h4 class="card-title w3-padding-24">
 
Through our research, we not only learned more about the sugar affecting obesity and diabetes but tackle the problem with synthetic biology and biotechnology. Furthermore, we also increase public awareness and understanding of the relationship between excess glucose uptake and health.
 
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  <li class="list-group-item w3-wide" style="text-align: center"><strong>- REFERENCE -</strong></li>
 
  <li class="list-group-item" style="color: black;">1. &nbsp;&nbsp;&nbsp;&nbsp;The relationship between glucose and vitamin C plays a huge role in health. Natural News. November 18, 2011. By Dr. David Jockers</li>
 
  
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Revision as of 13:54, 29 October 2017

iGEM Human Practice

Overview

"Human Practices is the study of how your work affects the world, and how the world affects your work." — Peter Carr, Director of Judging. What’s Human practice? It is not just a work  to confirm and strengthen what we think is right. Instead, we should learn to share our knowledge with the world. We can’t just instill our personal cognition into others, nor can we blindly believe in whatever others say. All in all, human practice is all about “gain, give and mutual interaction”.

First, we build up a system constructed by the three topics below: Project, Us and the World. What we found is that our activities can actually made up a comprehensive interaction (refer to the following picture beside) For example, we “gain” professional suggestions from experts in various fields, which have made us think of repositioning our project; To conduct educating, we “give” what we know to those who are laymen in synthetic biology and sugar controlling. Other examples of give and gain also includes marketing and sponsorships. It is also necessary that we set up mutual pathways for knowledges, which are also known as meetups, collaborations and cross-domain communications. Totaling up all of them, we’ve excellently completed human practice.

To achieve our goal, we consult experts in different areas of study

Expert Consultation

Nephrologist

  • Time

    7/22

  • Location

    Bio-Lab

  • Consultant

    Dr. Wu

×

Nepthrologist

Taiwan has the reputation of “the kingdom of Hem dialysis”. Yes, this is apparently not a thing we should be proud of. A huge sum of money is spent on this problem every year. But, you probably don’t know that a huge ratio of these cases are caused by neither drug abuse nor consuming too much salty food. Instead, diabetes is what may leads to kidney diseases. So, we invited Dr. Wu from the division of nephrology to tell us about the negative effects of diabetes. 

 In the interview, he mentioned that due to hyperglycemia, HHNK and DKA, which may cause headache, nausea, or even drive people into coma, is often found in people with diabetes. Furthermore, hyperglycemia can also cause the filtration in the glomerular to accelerate, which leads to its hypertrophy. As the function of kidney is gradually damaged, it can no longer eliminate the deleterious substances from our body. With urea and creatinine surging, a person could eventually end up in renal failure. From above, we can get a conclusion that diabetes is surely a thorny chronic disease that we should be cautious of.

Taiwan has the reputation of “the kingdom of Hem dialysis”. Yes, this is apparently not a thing we should be proud of. A huge sum of money is spent on this problem every year. But, you probably don’t know that a huge ratio of these cases are caused by neither drug abuse nor consuming too much salty food. Instead, diabetes is what may leads to kidney diseases. So, we invited Dr. Wu from the division of nephrology to tell us about the negative effects of diabetes. 

 In the interview, he mentioned that due to hyperglycemia, HHNK and DKA, which may cause headache, nausea, or even drive people into coma, is often found in people with diabetes. Furthermore, hyperglycemia can also cause the filtration in the glomerular to accelerate, which leads to its hypertrophy. As the function of kidney is gradually damaged, it can no longer eliminate the deleterious substances from our body. With urea and creatinine surging, a person could eventually end up in renal failure. From above, we can get a conclusion that diabetes is surely a thorny chronic disease that we should be cautious of.

 

Fitness Coach

  • Time

    7/29

  • Location

    Smooth Fitness Studio

  • Consultant

    Coach Wei Qian-Fu

×

Coach

 

Nutritionist

  • Time

    9/11

  • Location

    McDonald's

  • Consultant

    Nutritionist Liu Guan-Ling

×

Nutritionist

Motivation : When visiting the fitness coach, he suggested that we also consult a nutritionist, assuming that the answers agreed by different professions may be somewhat different. Based on the recommendations of the fitness coach, we found a nutritionist from Cheng Ching Hospital, hoping to get the answer that is beneficial to our project.

Highlight :
  1. Processed sugar intake accounted for a person's daily calories required 10%
  2. Excessive diet can hurt the body
  3. The amount of calories required for a day minus about 400 calories is the most appropriate calorie needed for dieting
  4. Fat is also one of the main causes of obesity
  5. Note the control of blood sugar

Conclusion :
After this interview, we found that the point of discussion nutritionist and fitness coach stand are similar in many ways : for instance, going on diet should not be excessive, controlling  food and drink is important. These are complementary to what we want to do. This interview also let us adjust our project in order to support the public in pursue of a healthy and better life.

 

Outreach

Science, not only the lab, but into into the public


Banner 2

The Poll

Time:     9/16

Location:
   Taichung City

Participants:
The public

Walk into the public!

×

The Poll

 

Banner 2

S&T Month

Time:     5/22, 23, 25

Location:
   Lecture Hall & Bio-Lab

Participants:
Mingdao students

iGEM in Campus!

×

S&T month

S&T Month is a tech activity hold by Mingdao annually. In the period time of five weeks, teachers and students trained in Physics, Chemical, Earth science, Biology and iGEM lead the other students to have an inside look into the world of science. 2017 Mingdao Team arranged two days of experiment and one day of a lecture. It is because iGEM still remains unfamiliar to them that the registration is quite enthusiastic. Such an optimistic start it is our campaign on iGEM has.  


 The first experiment is plasmid DNA extraction. After explaining the concept of it, we divided them into six groups, and chose a leader from our team members for every group. Most of the students had never used pipette before, which made them tense but eager to try. After all, what we students usually use are always droppers, beakers…and so on. 

  During the experiment day, we showed them our newly-opened-up lab and had them take turn operating at the same time. They all felt it cool and funny to extract the plasmid, and showed more interest in the experiment, electrophoresis, the next day. Not only did they ask questions enthusiastically, but they were more skilled because of the practices the day before.

As for the lecture on the third day, we told them more about what exactly Molecular biology is, and we invited a senior who had engaged in iGEM last year shared his experience and what he learned in iGEM. 

This activity gives middle school students a basic idea of Molecular biology. Moreover, it helps increase iGEM’s popularity as well. It is really killing two birds with one stone. 

 

Banner 2

Elementary School

Time:     9/22

Location:

Chiao-Jen Elementary School

Participants:
Kids

Sow Seed of Science

×

Elementary School Promotion


After S&T Month, we decided to extend our educate range to elementary school students. To let more people know the spirit of iGEM, we went to an elementary school, Chiao-Jen, to teach students there some basic concept of synthetic biology and introduce iGEM to them.

   We prepared a game for them and a bag of candy as reward, making it easier to understand what we want to express. Every team had one million dollars to invest in the genetically modified product. In the meanwhile, we mixed some fundamental idea of the synthetic biology into the game. Then, we explained the relationship between DNA and gene briefly. To our surprise, there was even a little boy asking us our opinion on GMO foods! 

In this activity, we find It is the passionate interaction students react to you that what the most enjoyable moment of teaching is.  It was their passionate participation that made this activity succeed.

 

Monterosso

Drink Sampling

Time:     10/3

Location:

Mingdao High School

Participants:

Mingdao staff and students

Just Drink It!

×

Drink Sampling

 


Food and Drug Administration

Time : 9/27

Location : TFDA Office Building

Participant : Section Manager Zhou


Food Industry Research and Development Institute

Time : 9/29

Location : FIRDI Research Building

Participant : Doctor Zhu Wen-Shen

Not limited to laboratory, we make business approach

Education

Expert Consultation

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iGEM Human Practice

  Human Practice

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