Difference between revisions of "Team:HBUT-China/Results"

 
(5 intermediate revisions by the same user not shown)
Line 9: Line 9:
 
<script src="http://code.jquery.com/jquery-1.10.2.min.js"></script>
 
<script src="http://code.jquery.com/jquery-1.10.2.min.js"></script>
 
<script src="https://cdn.bootcss.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
 
<script src="https://cdn.bootcss.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
<script type="text/javascript" src="http://123.207.175.242/csdn/js/jq22.js"></script>  
+
<script type="text/javascript" src="http://123.207.175.242/csdn/js/jq22.js"></script>
 +
<script type="text/javascript" src="http://123.207.175.242/csdn/js/menulist.js"></script>  
 
</head>
 
</head>
 
<body>
 
<body>
Line 16: Line 17:
 
       <ul>
 
       <ul>
 
         <li><img src="https://static.igem.org/mediawiki/2017/5/55/HBUT-logo2.png" height="45"/></li>
 
         <li><img src="https://static.igem.org/mediawiki/2017/5/55/HBUT-logo2.png" height="45"/></li>
        <li><a href='https://2017.igem.org/Team:HBUT-China'>HOME</a></li>
+
       
        <li class='has-sub'><a href='#'>TEAM</a>
+
            <ul>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Team'>Team</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Collaborations'>Collaborations</a></li>
+
            </ul>
+
        </li>
+
        <li class='has-sub'><a href='javascript:;'>PROJECT</a>
+
            <ul>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Description'>Description</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Design'>Design</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Experiments'>Experiments</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Notebook'>Notebook</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/InterLab'>InterLab</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Model'>Model</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Results'>Results</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Demonstrate'>Demonstrate</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Attributions'>Attributions</a></li>
+
            </ul>
+
        </li>
+
        <li class='has-sub'><a href='javascript:;'>PARTS</a>
+
            <ul>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Parts'>Parts</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Basic_Parts'>Basic Parts</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Composite_Parts'>Composite Parts</a></li>
+
            </ul>
+
        </li>
+
        <li><a href='https://2017.igem.org/Team:HBUT-China/SAFETY'>SAFETY</a></li>
+
        <li class='has-sub'><a href='javascript:;'>HUMAN PRACTICES </a>
+
            <ul>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Silver_HP'>Silver HP</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Integrated_and_Gold'>Integrated and Gold</a></li>
+
              <li ><a href='https://2017.igem.org/Team:HBUT-China/Public_Engagement'>Public Engagement</a></li>
+
            </ul>
+
        </li>
+
 
       </ul>
 
       </ul>
 
   </div>
 
   </div>
 
</div>
 
</div>
<!-- one bt one slider -->
 
<!--
 
<div class="wrape homeone">
 
  <div id="obo_slider">           
 
      <div class="oneByOne_item">
 
        <a href="javascript:;"><img src="https://static.igem.org/mediawiki/2017/5/55/HBUT-logo2.png" width="300" class="wp1_3 slide1_bot"/></a>               
 
        <span class="txt1">Nickel ion!</span>       
 
        <span class="txt2">Heavy metal pollutants!</span>                                 
 
        <span class="txt3 short">For this year¡¯s iGEM Competition, our team will be focusing on putting forward a biological approach to detect nickel ions as a heavy metal contaminant in the natural environment</span>                                   
 
      </div>
 
      <div class="oneByOne_item">                                   
 
        <a href="javascript:;"><img src="https://static.igem.org/mediawiki/2017/5/55/HBUT-logo2.png" width="300" class="wp1_3 wp1_left slide2_bot" /></a>                   
 
        <span class="txt1 blue txt_right2">In order to achieve this goal, we use a nickel-sensitive repressive promoter (pncrA)</span>     
 
        <span class="txt1 blue txt_right2">In the absence of nickel ions, the repressor protein (NcrB) binds to the promoter, preventing the expression of the subsequent gene</span>
 
  </div>   
 
</div>
 
-->
 
 
<div class="content-main">
 
<div class="content-main">
 
   <div class="container">
 
   <div class="container">
Line 79: Line 29:
 
              <h1>Result</h1>
 
              <h1>Result</h1>
 
            </div>
 
            </div>
            <h5>We will show our results from three aspects:</h5>
+
            <h2 style="font-weight: bold;">Experimental results:</h2>
<small class="bigtitle">Qualitative analysis:</small>
+
            <small class="bigtitle">Response to nickel ions:</small>
<h5>After 12 hours of incubation(LB,37℃,200r/min), we observed the bacteria on a fluorescence microscope.</h5>
+
            <p>We added nickel ions in the medium of strain K2304002. After 2h (200rpm, 37 ℃, LB), we centrifuged the culture medium at 12000 r / min. The red precipitate appeared at the bottom of the centrifuge tube,while the blank control group produced very little, or none of the red precipitation. This indicates that KL2304002 can be induced by Ni ions to produce RFP.</p>
<h5>In the medium with the addition of nickel ions, we can see visible red fluorescence.</h5>
+
<div align="center" style="margin:10px 0;">
<div class="row">
+
<img src="//2017.igem.org/wiki/images/8/89/Hbut-newresult-1.png" alt="this is a photo">
<div class="col-lg-6">
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/5/50/Hbut-result-1.png" alt="this is a photo">
+
</div>
+
</div>
+
 
</div>
 
</div>
<h5>In other media, there is no such phenomenon. The whole vision is black.</h5>
+
            <small class="bigtitle">Specific response:</small>
<div class="row">
+
            <p>In order to detect whether strain K2304002 is also induced by other ions,</p>
<div class="col-lg-6">
+
            <p>We mixed samples using Cd<sup>2 +</sup>, Co<sup>2 +</sup>, Cu<sup>2 +</sup>, Fe<sup>3 +</sup>, and Ni<sup>2 +in LB medium, with a concentration of 0.01 mmol / L .</p>
<div align="center" style="margin:10px 0;">
+
          <p> We cultured the samples at 250rpm, 37 ℃ overnight.</p>
<img src="https://static.igem.org/mediawiki/2017/4/48/Hbut-result-2.png" alt="this is a photo">
+
          <p> The next day we observed them with a fluorescence microscope. Excitation light is Blue background light.</p>
</div>
+
<div align="center" style="margin:10px 0;">
</div>
+
<img src="//2017.igem.org/wiki/images/4/4f/Hbut-newresult-2.png" alt="this is a photo">
<div class="col-lg-6">
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/e/e5/Hbut-result-3.png" alt="this is a photo">
+
</div>
+
</div>
+
 
</div>
 
</div>
<div class="row">
+
            <p>Clearly, only the sample with Ni ions showed red fluorescence, the other groups had no red fluorescence. Note that the iron ions reacted with the supstance in the culture medium,so that there is an impurity in the field of view.</p>
<div class="col-lg-6">
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/a/ab/Hbut-result-4.png" alt="this is a photo">
+
</div>
+
</div>
+
<div class="col-lg-6">
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/3/3d/Hbut-result-5.png" alt="this is a photo">
+
</div>
+
</div>
+
</div>
+
<div class="row">
+
<div class="col-lg-6">
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/1/1f/Hbut-result-6.png" alt="this is a photo">
+
</div>
+
</div>
+
</div>
+
<h5>So our device only responds to nickel ions.</h5>
+
<small class="bigtitle">Quantitative analysis:</small>
+
<h5>At the initial induction concentration of OD0.8, and the Induction time is 2 hours. Under this condition, the nickel ion concentration has a significant function relationship with the fluorescence intensity.</h5>
+
<h5>Especially in the nickel ion concentration of 10-6mmol / L to 10-4mmol / L between.</h5>
+
  
 +
 +
          <small class="bigtitle"> Qualitative testing:</small>
 +
            <p>K304002 was cultured at different concentrations of nickel ions, and the fluorescence intensity was measured every hour. We found that different concentrations of nickel ions caused inconclusive differences in fluorescence intensity.</p>
 
<div align="center" style="margin:10px 0;">
 
<div align="center" style="margin:10px 0;">
<img src="https://static.igem.org/mediawiki/2017/7/71/Hbut-result-7.png" alt="this is a photo">
+
<img src="//2017.igem.org/wiki/images/1/1d/Hbut-newresult-3.png" alt="this is a photo">
 
</div>
 
</div>
  
<small class="bigtitle">model:</small>
+
 
<h5>At first, we made some assumptions.</h5>
+
            <p>Therefore, we tried to find a way to perform qualitative testing. We used different concentrations of nickel ions to induce the strain in OD0.8, and detected the fluorescence intensity every other hour by fluorescence spectrophotometer. And finally we found with a nickel ion concentration of 10-6mmol / L to 10-4mmol / L, that the correlation between fluorescence intensity and nickel ion concentration is the highest. So it has the application value of qualitative detection.</p>
<small class="bigtitle">Assumptions:</small>
+
 
<p>The degradation of and other substances are linear.</p>
+
            <small class="bigtitle">Modeling results:</small>
<p>Each cell has the same state.</p>
+
            <p>In the process of modeling, we present some basic assumptions.</p>
<p>The reaction in the process satisfies the first-order kinetic reaction.</p>
+
            <small class="bigtitle">Assumptions:</small>
<h5>Then we got some conclusions through modeling.</h5>
+
          <p> The degradation of other supstances are linear.</p>
<small class="bigtitle">Incomplete Repression: </small>
+
          <p> Each cell has the same state.</p>
<h5>Under incomplete repression, the bacteria express red fluorescent proteins without the presence of nickel ions.</h5>
+
          <p> The reaction in the process satisfies the first-order kinetic reaction.</p>
<h5>The incomplete repression of promoters is a major issue in our fluorescence system. This issue was particularly observed in following diagram.</h5>
+
          <p> Then we reached some conclusions through modeling.</p>
 +
 
 +
            <small class="bigtitle">Transcription Repression:</small>
 +
              <div align="center" style="margin:10px 0;">
 +
              <img src="//2017.igem.org/wiki/images/e/ed/Hbut-newresult-4.png" alt="this is a photo">
 +
              </div>
 +
          <small class="bigtitle">Release Repression:</small>
 +
              <div align="center" style="margin:10px 0;">
 +
              <img src="//2017.igem.org/wiki/images/a/ad/Hbut-newresult-5.png" alt="this is a photo">
 +
              </div>
 +
 
 +
 
 +
            <small class="bigtitle">Total Model:</small>
 
<div align="center" style="margin:10px 0;">
 
<div align="center" style="margin:10px 0;">
<img src="https://static.igem.org/mediawiki/2017/6/60/8.png" alt="this is a photo">
+
<img src="//2017.igem.org/wiki/images/0/0d/Hbut-newresult-6.png" alt="this is a photo">
 
</div>
 
</div>
<h5>The solution of this differential equation is as follows:</h5>
 
 
<div align="center" style="margin:10px 0;">
 
<div align="center" style="margin:10px 0;">
<img src="https://static.igem.org/mediawiki/2017/a/a1/Hbut-result-9.png" alt="this is a photo">
+
<img src="https://static.igem.org/mediawiki/2017/b/ba/Hbut-newresult-7.png" alt="this is a photo">
 
</div>
 
</div>
<small class="bigtitle">Cytotoxicity:</small>
 
<p>We found that a high concentration of nickel ions will reduce the expression of fluorescence, because nickel ions have cytotoxicity. </p>
 
<p>The July 20 experimental data is as follows:</p>
 
 
<div align="center" style="margin:10px 0;">
 
<div align="center" style="margin:10px 0;">
<img src="https://static.igem.org/mediawiki/2017/7/7b/Hbut-result-10.png" alt="this is a photo">
+
<img src="//2017.igem.org/wiki/images/c/ce/Hbut-newresult-8.png" alt="this is a photo">
 
</div>
 
</div>
<p>The different equation of the red fluorescent protein is then modified to:</p>
 
 
<div align="center" style="margin:10px 0;">
 
<div align="center" style="margin:10px 0;">
<img src="https://static.igem.org/mediawiki/2017/a/a5/Hbut-result-11.png" alt="this is a photo">
+
<img src="//2017.igem.org/wiki/images/8/80/Hbut-newresult-9.png" alt="this is a photo">
</div>
+
<p>Where</p>
+
<div align="center" style="margin:10px 0;">
+
<img src="https://static.igem.org/mediawiki/2017/e/e2/Hbut-result-12.png" alt="this is a photo">
+
 
</div>
 
</div>
 +
 +
            <a href="https://2017.igem.org/Team:HBUT-China/Model">https://2017.igem.org/Team:HBUT-China/Model</a>
 
        </div>
 
        </div>
 
         <div class="col-lg-2"></div>
 
         <div class="col-lg-2"></div>

Latest revision as of 12:49, 1 November 2017

Experimental results:

Response to nickel ions:

We added nickel ions in the medium of strain K2304002. After 2h (200rpm, 37 ℃, LB), we centrifuged the culture medium at 12000 r / min. The red precipitate appeared at the bottom of the centrifuge tube,while the blank control group produced very little, or none of the red precipitation. This indicates that KL2304002 can be induced by Ni ions to produce RFP.

this is a photo
Specific response:

In order to detect whether strain K2304002 is also induced by other ions,

We mixed samples using Cd2 +, Co2 +, Cu2 +, Fe3 +, and Ni2 +in LB medium, with a concentration of 0.01 mmol / L .

We cultured the samples at 250rpm, 37 ℃ overnight.

The next day we observed them with a fluorescence microscope. Excitation light is Blue background light.

this is a photo

Clearly, only the sample with Ni ions showed red fluorescence, the other groups had no red fluorescence. Note that the iron ions reacted with the supstance in the culture medium,so that there is an impurity in the field of view.

Qualitative testing:

K304002 was cultured at different concentrations of nickel ions, and the fluorescence intensity was measured every hour. We found that different concentrations of nickel ions caused inconclusive differences in fluorescence intensity.

this is a photo

Therefore, we tried to find a way to perform qualitative testing. We used different concentrations of nickel ions to induce the strain in OD0.8, and detected the fluorescence intensity every other hour by fluorescence spectrophotometer. And finally we found with a nickel ion concentration of 10-6mmol / L to 10-4mmol / L, that the correlation between fluorescence intensity and nickel ion concentration is the highest. So it has the application value of qualitative detection.

Modeling results:

In the process of modeling, we present some basic assumptions.

Assumptions:

• The degradation of other supstances are linear.

• Each cell has the same state.

• The reaction in the process satisfies the first-order kinetic reaction.

Then we reached some conclusions through modeling.

Transcription Repression:
this is a photo
Release Repression:
this is a photo
Total Model:
this is a photo
this is a photo
this is a photo
this is a photo
https://2017.igem.org/Team:HBUT-China/Model