Difference between revisions of "Team:TAS Taipei/Software"

 
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                             &nbsp;&nbsp;&nbsp;<a href="https://goo.gl/Ko1uWz">PR bacteria</a> <br>
 
                             &nbsp;&nbsp;&nbsp;<a href="https://goo.gl/Ko1uWz">PR bacteria</a> <br>
 
                             &nbsp;&nbsp;&nbsp;<a href="https://goo.gl/AATnBD">Biofilm</a> <br><br>
 
                             &nbsp;&nbsp;&nbsp;<a href="https://goo.gl/AATnBD">Biofilm</a> <br><br>
−
                             Download our calculators <a href="https://github.com/xXMaelstromXx/TAS_Taipei/releases">here.</a>  
+
                             Download our calculators <a href="https://github.com/igemsoftware2017/TAS_Taipei/releases/tag/1.0.0">here.</a>  
 
                         </h4>
 
                         </h4>
 
                     </div>
 
                     </div>
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                     <div class="row">
 
                     <div class="row">
 
                         <h4 class="para col-lg-12">
 
                         <h4 class="para col-lg-12">
−
                             <b>Biofilm_Runner is a calculator that outputs the NP concentration of the effluent</b> given the following inputs: initial NP concentration, velocity of water in contact with biofilm, total volume of container, time for biofilm to be in contact with NP solution, and the number of biocarriers used. Try the Biofilm_Runner calculator below!
+
                             <b>Biofilm_Runner is a calculator that outputs the NP concentration of the effluent</b> given the following inputs: initial NP concentration, speed of water in contact with biofilm, total volume of container, time for biofilm to be in contact with NP solution, and the number of biocarriers used. Try the Biofilm_Runner calculator below!
 
                         </h4>
 
                         </h4>
 
                     </div>
 
                     </div>
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                                         </tr>
 
                                         </tr>
 
                                         <tr>
 
                                         <tr>
−
                                             <td>Velocity of water in contact with biofilm (cm/sec)</td>
+
                                             <td>Speed of water in contact with biofilm (cm/min)</td>
 
                                             <td><input type="number" id="velocity" value="0"></td>
 
                                             <td><input type="number" id="velocity" value="0"></td>
 
                                         </tr>
 
                                         </tr>
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                                         </tr>
 
                                         </tr>
 
                                         <tr>
 
                                         <tr>
−
                                             <td>Time for biofilm to be in contact with NP solution (seconds)</td>
+
                                             <td>Time for biofilm to be in contact with NP solution (minutes)</td>
 
                                             <td><input type="number" id="biot" value="0"></td>
 
                                             <td><input type="number" id="biot" value="0"></td>
 
                                         </tr>
 
                                         </tr>
 
                                         <tr>
 
                                         <tr>
−
                                             <td>Surface Area of biofilm used</td>
+
                                             <td># of biocarriers used (SA of 44.8 cm<sup>2</sup> each)</td>
 
                                             <td><input type="number" id="SA" value="0"></td>
 
                                             <td><input type="number" id="SA" value="0"></td>
 
                                         </tr>
 
                                         </tr>
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                     <div class="row">
 
                     <div class="row">
 
                         <h4 class="para col-lg-12">
 
                         <h4 class="para col-lg-12">
−
                             <b>ReverseBiofilm_Runner is a calculator that outputs the number of biocarriers</b> needed given the following inputs: initial and target NP concentration, velocity of water in contact with biofilm, total volume of container, and time for biofilm to be in contact with NP solution. Try the ReverseBiofilm_Runner calculator below!
+
                             <b>ReverseBiofilm_Runner is a calculator that outputs the number of biocarriers</b> needed given the following inputs: initial and target NP concentration, speed of water in contact with biofilm, total volume of container, and time for biofilm to be in contact with NP solution. Try the ReverseBiofilm_Runner calculator below!
 
                         </h4>
 
                         </h4>
 
                     </div>
 
                     </div>
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                                         </tr>
 
                                         </tr>
 
                                         <tr>
 
                                         <tr>
−
                                             <td>Velocity of Water in contact with Biofilm (cm/s)</td>
+
                                             <td>Speed of Water in contact with Biofilm (cm/min)</td>
 
                                             <td><input type="number" id="velocity2" value="0"></td>
 
                                             <td><input type="number" id="velocity2" value="0"></td>
 
                                         </tr>
 
                                         </tr>
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                                         </tr>
 
                                         </tr>
 
                                         <tr>
 
                                         <tr>
−
                                             <td>Total time biofilm is in contact with NP solution (s)</td>
+
                                             <td>Total time biofilm is in contact with NP solution (minutes)</td>
 
                                             <td><input type="number" id="biottwo" value="0"></td>
 
                                             <td><input type="number" id="biottwo" value="0"></td>
 
                                         </tr>
 
                                         </tr>
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                                             <td colspan="2"><button onclick = "calculate4()">Calculate!</button></td>
 
                                             <td colspan="2"><button onclick = "calculate4()">Calculate!</button></td>
 
                                         </tr>
 
                                         </tr>
−
                                         <tr><td colspan=2>Surface Area of Biofilm Needed(cm<sup>2</sup>): <span id="bioNPResultSA">&nbsp;&nbsp;&nbsp;</span>
+
                                         <tr><td colspan=2># of biocarriers needed (SA of 44.8 cm<sup>2</sup> each): <span id="bioNPResultSA">&nbsp;&nbsp;&nbsp;</span>
 
                                         </tr>
 
                                         </tr>
 
                                     </tbody>
 
                                     </tbody>
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             var conc = document.getElementById("conc").value;
 
             var conc = document.getElementById("conc").value;
 
             var v = document.getElementById("velocity").value;
 
             var v = document.getElementById("velocity").value;
−
             var SA = 1;
+
             var SA = 44.8*document.getElementById("SA").value;
 
             var V = document.getElementById("volume").value;
 
             var V = document.getElementById("volume").value;
 
             var t = document.getElementById("biot").value;
 
             var t = document.getElementById("biot").value;
−
             var tint = 300;
+
             var tint = 5;
 
             var ktrap = -0.000686;
 
             var ktrap = -0.000686;
 
             var dNPdt = (ktrap*conc*v*SA)/(1000*V);
 
             var dNPdt = (ktrap*conc*v*SA)/(1000*V);
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             var t = document.getElementById("biottwo").value;
 
             var t = document.getElementById("biottwo").value;
 
             var SA = 1;
 
             var SA = 1;
−
             var tint = 300;
+
             var tint = 5;
 
             var ktrap = -0.00017331;
 
             var ktrap = -0.00017331;
 
             var dNPdt = (ktrap*conc*v*SA)/(1000*V);
 
             var dNPdt = (ktrap*conc*v*SA)/(1000*V);
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−
             document.getElementById("bioNPResultSA").innerHTML = Math.round(SA*10000000)/10000000;
+
             document.getElementById("bioNPResultSA").innerHTML = Math.round(SA*10000000/44.8)/10000000;
 
         }
 
         }
 
         calculate2 = function(){
 
         calculate2 = function(){

Latest revision as of 13:52, 1 November 2017

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Project
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Experiment

Modeling

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SOFTWARE

We’ve created four calculators based on our modeling data to inform WWTP managers on the amount of Proteorhodopsin (PR) bacteria or biofilm-coated biocarriers they need to remove nanoparticles (NPs). Imagine yourself as a WWTP manager and try our PR and biofilm calculators below!

Learn more about modeling for:
   PR bacteria
   Biofilm

Download our calculators here.

PR BACTERIA CALCULATORS

PR_Runner is a calculator that outputs the final NP concentration given the following inputs: initial NP concentration, initial PR bacteria concentration and intended time. Try the PR_Runner calculator below!

Initial NP Concentration (micromolar)
Target NP Concentration (micromolar)
Retention Time (the amount of time water stays in the tank, hours)
Initial Bacteria Concentration Needed (# of bacteria/microliter):    

ReversePR_Runner is a calculator that outputs the final bacteria concentration given the following inputs: initial and target NP concentration and intended retention time. Try the ReversePR_Runner calculator below!

Initial NP Concentration (micromolar)
Initial Bacteria Concentration (# of cells/microliter)
Amount of time that can be used for the process (hours)
Resulting NP Concentration (micromolar):    

BIOFILM CALCULATORS

Biofilm_Runner is a calculator that outputs the NP concentration of the effluent given the following inputs: initial NP concentration, speed of water in contact with biofilm, total volume of container, time for biofilm to be in contact with NP solution, and the number of biocarriers used. Try the Biofilm_Runner calculator below!

Initial nanoparticle concentration (micromolar)
Speed of water in contact with biofilm (cm/min)
Total Volume of Container (L)
Time for biofilm to be in contact with NP solution (minutes)
# of biocarriers used (SA of 44.8 cm2 each)
Resulting Nanoparticle Concentration (micromolar):    

ReverseBiofilm_Runner is a calculator that outputs the number of biocarriers needed given the following inputs: initial and target NP concentration, speed of water in contact with biofilm, total volume of container, and time for biofilm to be in contact with NP solution. Try the ReverseBiofilm_Runner calculator below!

Initial NP concentration (micromolar)
Target NP Concentration (micromolar)
Speed of Water in contact with Biofilm (cm/min)
Total Volume of tank (L)
Total time biofilm is in contact with NP solution (minutes)
# of biocarriers needed (SA of 44.8 cm2 each):    

All units of the output and the inputs are included in the program. Enter as many significant digits as possible for more accurate results. To inspect the code of each .jar files, unzip with tools like 7zip or Winzip and then use BlueJ (free Java IDE) to open the package.