Difference between revisions of "Team:NTHU Taiwan/Hardware"

 
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<h1 style="color:#DF6A6A">Hardware
 
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<center><h1 style="color: #6c5070">Hardware Design: Design Proposal and Functional Prototype</h1></center>
  
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<img width="50%" src="https://static.igem.org/mediawiki/2017/f/f0/T--NTHU_Taiwan--AppliedDesign--FarmlandComputerModel.png">
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<p><center><font size="2">
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Integrated system of endocrine disrupting chemicals (EDCs) water protection system.
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</font></center></p>
  
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<p>
 +
In order to solve some real environmental challenges, our team has proposed an integrated system that can both detect and degrade endocrine disrupting chemicals (EDCs) suitable for farmland water protection.
 +
</p><br><br>
  
 +
<p>
 +
When we started building this system, we aimed not only to solve a few farmers’ problems but on a bigger scale, agricultural and industrial, since in most of the developing countries, factories could be easily found in between farmland. On the left-hand side of the flowchart, we developed the system that could sense the concentration of the EDC in the water and control the valve to protect the farmland from polluted water. And on the right-hand side of the flowchart, we could collect such data, such as the concentration, time, and place. If the number of devices could grow to dozens or even hundreds, we would be able to tell where and when did the pollution came from.
 +
</p>
  
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<img width="50%" src="https://static.igem.org/mediawiki/2017/d/d9/T--NTHU_Taiwan--Applied_Design--System_Flow_Chart.png">
  
<h1>
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<p><center><font size="2">
Hardware Design: Design Proposal and Functional Prototype
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System flow chart of our EDCs water protection sysetm.
</h1>
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</font></center></p>
  
<img width="25%" src="https://static.igem.org/mediawiki/2017/f/f0/T--NTHU_Taiwan--AppliedDesign--FarmlandComputerModel.png">
 
  
<p>
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<video style="display:block; margin: 0 auto;" width="90%" controls>
Integrated system of endocrine disrupting chemicals (EDCs) water protection system.
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<source src=" https://static.igem.org/mediawiki/2017/0/02/T--NTHU_Taiwan--Demonstrate--Model_Demo_Video.mp4" type="video/mp4"></video>
</p>
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<p>
 
In order to solve some real environmental challenges, our team has proposed an integrated system that can both detect and degrade endocrine disrupting chemicals (EDCs) suitable for farmland water protection.
 
</p>
 
  
<p>
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<p><center><font size="2">
When we started building this system, we aimed not only to solve a few farmers’ problems, but on a bigger scale, agricultural and industrial, since in most of the developing countries, factories could be easily found in between farmland. On the left-hand side of the slide, we developed the system that could sense the concentration of the EDC in the water and control the valve to protect the farmland from polluted water. And on the right-hand side of the slide, we could collect such data, such as the concentration, time, and place. If the number of devices could grow to dozens or say hundreds, we would be able to tell where and when did the pollution came from.
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Integrated System Demo Video
</p>
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</font></center></p><br><br><br>
  
<img width="25%" src="https://static.igem.org/mediawiki/2017/b/b9/T--NTHU_Taiwan--Design--d2.png">
 
  
<p>
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<p>
System flow chart of our EDCs water protection sysetm.
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In general, the gate will remain half-open and let the water comes into the channel. When the water passes through the gate, it will then passes through the filter. Enzyme mixed with activated carbon is filled in the filter, which can help filter out most of our target endocrine disrupting chemicals. We have proved the capability of the enzyme and filter through the modeling and experiment test. Then the water will encounter our fluorescent detection device. We pump some water into the detector and mix them with the indicator paper which is coated with modified <I>E. coli</I>, and the EDCs in the water can be captured by our modified <I>E. coli</I>. The <I>E. coli</I> is later excited with laser light to produce fluorescent, the fluorescent (whose) signal will be collected and calculated into relative EDCs concentration.  
</p>
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</p><br><br>
  
<p>
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<p>
First, in normal days, the gate will remain half open and let the water comes into the channel. When the water passes through the gate, it will then passes through the filter. Enzyme mixed with activated carbon is filled in the filter, which can help filter out most of our target endocrine disrupting chemicals. We have proved the capability of the enzyme and filter through modeling and experiment test. Then the water will encounter out fluorescent detection. We pump some water into the detector and mix them with the indicator paper which is coated with modified E. coli, and the EDCs in the water can be captured by our modified E. coli. The E. coli is later excited with laser light to produce fluorescent, the fluorescent signal will be collected and calculated into relative EDCs concentration.  
+
If the detected EDCs concentration is safe for the farmland to use, the microcontroller which is embedded in the detector will send a signal to the gate to tell it to remain open to let the water in. However, if the detected EDCs concentration is above the safety standard, a feedback signal will be sent to the gate and lower it to protect the farmland from further damage. The reading of the EDCs concentration will also be sent to our database and the App, which can allow the farmer or the farmland manager to remotely monitor the condition of the farmland.
</p>
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</p><br><br><br>
  
<p>
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<h2>
If the detected EDCs concentration is safe for the farmland to use, the microcontroller which is embedded in the detector will send a signal to the gate to tell it to remain open to let the water in. However, if the detected EDCs concentration is above the safety standard, a feedback signal will be sent to the gate and lower it to protect the farmland from further damage. The reading of the EDCs concentration will also be sent to our database and the App, which can allow the farmer or the farmland manager to remotely monitor the condition of the farmland.
+
Filter Design: Functional Prototype
</p>
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</h2>
  
<p>
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<p>
<b>
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Our target is to make the filter have the best efficient and longest lifetime. In the design, we use different pore size material to protect our core enzyme, so that it will not be damaged by other particles, and extending the filter lifetime. The front part of the filter is composed of polypropylene fiber, the back end of the filter is filled with activated carbon, which is mixed with the enzyme that can degrade our target endocrine disrupting chemicals. As for the outer shell, it is made of a layer of steel net and galvanized iron. A Solidworks filter sketch is provided underneath.
Filter Design: Functional Prototype
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</p>
</b>
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</p>
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<p>
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<p>
Our target is to make the filter have the best efficient and longest lifetime. In the design, we use different pore size material to protect our core enzyme, so that it will not be damaged by other particles, and extending the filter lifetime. The front part of the filter is composed of polypropylene fiber, the back end of the filter is filled with activated carbon, which is mixed with the enzyme that can degrade our target endocrine disrupting chemicals. As for the outer shell, it is made of a layer of steel net and galvanized iron. A Solidworks filter sketch is provided underneath. 
+
<img width="50%"src="https://static.igem.org/mediawiki/2017/8/8b/T--NTHU_Taiwan--Applied_Design--Section_view_of_the_filter.png">
</p>
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</p>
  
<p>
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<p><center><font size="2">
<img width="25%"src="https://static.igem.org/mediawiki/2017/8/8b/T--NTHU_Taiwan--Applied_Design--Section_view_of_the_filter.png">
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Section view of the filter.
</p>
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</font></center></p><br><br><br>
  
<p>
 
Section view of the filter.
 
</p>
 
  
<p>
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<p>
Before making the functional prototype, our wet and dry lab members conducted enzyme kinetics modelling to know the degradation speed and time, also a concentration test is performed to know the activated carbon’s EDC absorbing ability. Both modelling and test sure positive result, for further details, please check out the Model page under the Project category. Some prototype photos are provided underneath, too.
+
Before making the functional prototype, our wet and dry lab members conducted enzyme kinetics modeling to know the degradation speed and time, also a concentration test is performed to know the activated carbon’s EDC absorbing ability. Both modeling and test sure positive result, for further details, please check out the Model page under the Project category. Some prototype photos are provided underneath, too.
</p>
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</p>
  
<p>
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<p>
<img width="25%"src="https://static.igem.org/mediawiki/2017/6/65/T--NTHU_Taiwan--AppliedDesign--PrototypeFrontView.png">
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<img width="50%"src="https://static.igem.org/mediawiki/2017/6/65/T--NTHU_Taiwan--AppliedDesign--PrototypeFrontView.png">
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</p>
  
<p>
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<p><center><font size="2">
Prototype front view.
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Prototype front view.
</p>
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</font></center></p>
  
<p>
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<p>
<img width="25%"src="https://static.igem.org/mediawiki/2017/6/64/T--NTHU_Taiwan--AppliedDesign--PrototypeRearView.png">
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<img width="50%"src="https://static.igem.org/mediawiki/2017/6/64/T--NTHU_Taiwan--AppliedDesign--PrototypeRearView.png">
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<p>
 
Prototype rear view.
 
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<p>
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<p><center><font size="2">
<img width="25%"src="https://static.igem.org/mediawiki/2017/b/bc/T--NTHU_Taiwan--AppliedDesign--PrototypeSideView.png">
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Prototype rear view.
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</font></center></p>
  
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<p>
Prototype side view.  
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<img width="50%"src="https://static.igem.org/mediawiki/2017/b/bc/T--NTHU_Taiwan--AppliedDesign--PrototypeSideView.png">
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<p><center><font size="2">
<b>
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Prototype side view.
Fluorescence Detector: Design Concept and Current Lab Result
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</font></center></p><br><br><br>
</b>
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</p>
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<p>
 
Our design filer has proven to be capable of degrading the endocrine disrupting chemicals (EDCs) in the water. However, there are more situations needed to be considered. For example, when factories illegally emit wastewater that contains a high concentration of EDCs, it may exceed the degradation capability of our filter, and the farmland could then suffer serious damage. Also when typhoon approaches, the heavy muddy water can severely contaminate the growing environment of the crops. Thus, it is important to isolate such water flowing into the farmland. Hence we proposed a design of the fluorescence-based EDCs detector, that can detect the concentration of EDCs, and automatically controls the gate depending on the feedback signals sent by the detector.
 
</p>
 
  
<p>
+
<h2>
The core of the fluorescence-based EDCs detector lies on the chip which we designed to capture EDCs for the water sample. The mechanism behind it is to modify the E. coli’s expression of GFP and ER-alpha. EDCs will combine with ER-alpha, causing the structure of ER-alpha to change.  And then monobody will capture the bounded ER-alpha together with E.coli, leading to the change of fluorescence or surface plasmon resonance signal on the gold chip and we can thus estimate the concentration of EDCs. Despite there are still some technical challenges for us to tackle, for instance, the transforming of GFP into E. coli. We have been able to detect BPA and NP concentration as low as 5µM (about 1 ppm) in the water.
+
Fluorescence Detector: Design Concept and Current Lab Result
</p>
+
</h2>
  
<p>
+
<p>
Here we introduce the mechanical design proposal of our fluorescence-based EDCs detector. The mechanism of the fluorescence-based EDCs detector works as follow:
+
Our design filer has proven to be capable of degrading the endocrine disrupting chemicals (EDCs) in the water. However, there are more situations needed to be considered. For example, when factories illegally emit wastewater that contains a high concentration of EDCs, it may exceed the degradation capability of our filter, and the farmland could then suffer serious damage. Also when typhoon approaches, the heavy muddy water can severely contaminate the growing environment of the crops. Thus, it is important to isolate such water flowing into the farmland. Hence we proposed a design of the fluorescence-based EDCs detector, that can detect the concentration of EDCs, and automatically controls the gate depending on the feedback signals sent by the detector.  
First installed the biochip into the detector.
+
</p><br><br>
Turn on the detector’s microcontroller (MCU) and mini water pump.
+
The pump will periodically suck water and flow through the biochip
+
A laser light will excite the E. coli ’s GFP gene on the biochip and send out fluorescence.
+
The fluorescence will pass through an optical filter then be received by our light detector.
+
The program in the MCU will calculate the fluorescence light into relative EDCs concentration
+
If the concentration is lower than the safety standard, the MCU will not send a signal to the gate; if the concentration is higher than the safety standard, a feedback signal will be sent to the gate to close it in order to protect the farmland.
+
</p>
+
  
<p>
+
<p>
<img width="25%"src="https://static.igem.org/mediawiki/2017/2/2d/T--NTHU_Taiwan--Applied_Design--Fluorescence_based_EDCs_detector_front_view.png">
+
The core of the fluorescence-based EDCs detector lies on the chip which we designed to capture EDCs for the water sample. The mechanism behind it is to modify the <I>E. coli</I>s expression of GFP and ER-alpha. EDCs will combine with ER-alpha, causing the structure of ER-alpha to change.  And then monobody will capture the bounded ER-alpha together with <I>E. coli</I>, leading to the change of fluorescence or surface plasmon resonance signal on the gold chip and we can thus estimate the concentration of EDCs. Despite there are still some technical challenges for us to tackle, for instance, the transforming of GFP into <I>E. coli</I>. We have been able to detect BPA and NP concentration as low as 5µM (about 1 ppm) in the water.
</p>
+
</p><br><br>
  
<p>
+
<p>
Fluorescence-based EDCs detector front view.
+
Here we introduce the mechanical design proposal of our fluorescence-based EDCs detector. The mechanism of the fluorescence-based EDCs detector works as follow:
</p>
+
First installed the biochip into the detector.
 +
Turn on the detector’s microcontroller (MCU) and mini water pump.
 +
The pump will periodically suck water and flow through the biochip
 +
A laser light will excite the <I>E. coli</I> ’s GFP gene on the biochip and send out fluorescence.
 +
The fluorescence will pass through an optical filter then be received by our light detector.
 +
The program in the MCU will calculate the fluorescence light into relative EDCs concentration
 +
If the concentration is lower than the safety standard, the MCU will not send a signal to the gate; if the concentration is higher than the safety standard, a feedback signal will be sent to the gate to close it in order to protect the farmland.
 +
</p>
  
<p>
+
<p>
<img width="25%"src="https://static.igem.org/mediawiki/2017/9/90/T--NTHU_Taiwan--Applied_Design--Mechanical_design_of_the_fluorescence_based_EDCs_detector.png">
+
<img width="50%"src="https://static.igem.org/mediawiki/2017/2/2d/T--NTHU_Taiwan--Applied_Design--Fluorescence_based_EDCs_detector_front_view.png">
</p>
+
</p>
  
<p>
+
<p><center><font size="2">
Mechanical design of the fluorescence-based EDCs detector.
+
Fluorescence-based EDCs detector front view.
</p>
+
</font></center></p>
  
<p>
 
<b>
 
Water Gate
 
</b>
 
</p>
 
 
<p>
 
The water gate in our model is controlled by a step motor, and the screw bar in the middle of the gate enable the step motor to control the rising and lowering of the gate. The mechanism of the rising and lowering depends on the EDCs concentration sensed by our fluorescence-based EDCs detector. When the EDCs concentration exceeds the safety value or the flow rate is too fast, the microcontroller in the detector will automatically send out a control signal to lower the gate to protect the farmland.
 
</p>
 
  
<p>
+
<p>
<img src="https://static.igem.org/mediawiki/2017/8/83/T--NTHU_Taiwan--AppliedDesign--Water_Gate_Front_View.png">
+
<img width="50%"src="https://static.igem.org/mediawiki/2017/archive/9/90/20171029004500%21T--NTHU_Taiwan--Applied_Design--Mechanical_design_of_the_fluorescence_based_EDCs_detector.png">
</p>
+
</p>
+
<p>
+
water gate front view
+
</p>
+
  
<p>
+
<p><center><font size="2">
<img src="https://static.igem.org/mediawiki/2017/3/38/T--NTHU_Taiwan--AppliedDesign--Water_Gate_Side_View.png">
+
Mechanical design of the fluorescence-based EDCs detector.
</p>
+
</font></center></p><br><br><br>
  
<p>
 
water gate side view
 
</p>
 
  
<p>
+
<h2>
<img src="https://static.igem.org/mediawiki/2017/c/cb/T--NTHU_Taiwan--AppliedDesign--Feedback_Control.png">
+
Water Gate
</p>
+
</h2>
 
+
<p>
+
<p>
Block Diagram for Water Gate Control
+
The water gate in our model is controlled by a step motor, and the screw bar in the middle of the gate enable the step motor to control the rising and lowering of the gate. The mechanism of the rising and lowering depends on the EDCs concentration sensed by our fluorescence-based EDCs detector. When the EDCs concentration exceeds the safety value or the flow rate is too fast, the microcontroller in the detector will automatically send out a control signal to lower the gate to protect the farmland.
</p>
+
</p>
 
+
 
+
</center>
+
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+
  
 +
<p>
 +
<img src="https://static.igem.org/mediawiki/2017/c/ca/T--NTHU_Taiwan--Applied--Water_Gate.png">
 +
</p>
 
 
</div>
+
<p><center><font size="2">
 +
water gate front view and side view
 +
</font></center></p>
  
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Block Diagram for Water Gate Control
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Latest revision as of 16:16, 1 November 2017

Hardware


Hardware Design: Design Proposal and Functional Prototype

Integrated system of endocrine disrupting chemicals (EDCs) water protection system.

In order to solve some real environmental challenges, our team has proposed an integrated system that can both detect and degrade endocrine disrupting chemicals (EDCs) suitable for farmland water protection.



When we started building this system, we aimed not only to solve a few farmers’ problems but on a bigger scale, agricultural and industrial, since in most of the developing countries, factories could be easily found in between farmland. On the left-hand side of the flowchart, we developed the system that could sense the concentration of the EDC in the water and control the valve to protect the farmland from polluted water. And on the right-hand side of the flowchart, we could collect such data, such as the concentration, time, and place. If the number of devices could grow to dozens or even hundreds, we would be able to tell where and when did the pollution came from.

System flow chart of our EDCs water protection sysetm.

Integrated System Demo Video




In general, the gate will remain half-open and let the water comes into the channel. When the water passes through the gate, it will then passes through the filter. Enzyme mixed with activated carbon is filled in the filter, which can help filter out most of our target endocrine disrupting chemicals. We have proved the capability of the enzyme and filter through the modeling and experiment test. Then the water will encounter our fluorescent detection device. We pump some water into the detector and mix them with the indicator paper which is coated with modified E. coli, and the EDCs in the water can be captured by our modified E. coli. The E. coli is later excited with laser light to produce fluorescent, the fluorescent (whose) signal will be collected and calculated into relative EDCs concentration.



If the detected EDCs concentration is safe for the farmland to use, the microcontroller which is embedded in the detector will send a signal to the gate to tell it to remain open to let the water in. However, if the detected EDCs concentration is above the safety standard, a feedback signal will be sent to the gate and lower it to protect the farmland from further damage. The reading of the EDCs concentration will also be sent to our database and the App, which can allow the farmer or the farmland manager to remotely monitor the condition of the farmland.




Filter Design: Functional Prototype

Our target is to make the filter have the best efficient and longest lifetime. In the design, we use different pore size material to protect our core enzyme, so that it will not be damaged by other particles, and extending the filter lifetime. The front part of the filter is composed of polypropylene fiber, the back end of the filter is filled with activated carbon, which is mixed with the enzyme that can degrade our target endocrine disrupting chemicals. As for the outer shell, it is made of a layer of steel net and galvanized iron. A Solidworks filter sketch is provided underneath.

Section view of the filter.




Before making the functional prototype, our wet and dry lab members conducted enzyme kinetics modeling to know the degradation speed and time, also a concentration test is performed to know the activated carbon’s EDC absorbing ability. Both modeling and test sure positive result, for further details, please check out the Model page under the Project category. Some prototype photos are provided underneath, too.

Prototype front view.

Prototype rear view.

Prototype side view.




Fluorescence Detector: Design Concept and Current Lab Result

Our design filer has proven to be capable of degrading the endocrine disrupting chemicals (EDCs) in the water. However, there are more situations needed to be considered. For example, when factories illegally emit wastewater that contains a high concentration of EDCs, it may exceed the degradation capability of our filter, and the farmland could then suffer serious damage. Also when typhoon approaches, the heavy muddy water can severely contaminate the growing environment of the crops. Thus, it is important to isolate such water flowing into the farmland. Hence we proposed a design of the fluorescence-based EDCs detector, that can detect the concentration of EDCs, and automatically controls the gate depending on the feedback signals sent by the detector.



The core of the fluorescence-based EDCs detector lies on the chip which we designed to capture EDCs for the water sample. The mechanism behind it is to modify the E. colis expression of GFP and ER-alpha. EDCs will combine with ER-alpha, causing the structure of ER-alpha to change. And then monobody will capture the bounded ER-alpha together with E. coli, leading to the change of fluorescence or surface plasmon resonance signal on the gold chip and we can thus estimate the concentration of EDCs. Despite there are still some technical challenges for us to tackle, for instance, the transforming of GFP into E. coli. We have been able to detect BPA and NP concentration as low as 5µM (about 1 ppm) in the water.



Here we introduce the mechanical design proposal of our fluorescence-based EDCs detector. The mechanism of the fluorescence-based EDCs detector works as follow: First installed the biochip into the detector. Turn on the detector’s microcontroller (MCU) and mini water pump. The pump will periodically suck water and flow through the biochip A laser light will excite the E. coli ’s GFP gene on the biochip and send out fluorescence. The fluorescence will pass through an optical filter then be received by our light detector. The program in the MCU will calculate the fluorescence light into relative EDCs concentration If the concentration is lower than the safety standard, the MCU will not send a signal to the gate; if the concentration is higher than the safety standard, a feedback signal will be sent to the gate to close it in order to protect the farmland.

Fluorescence-based EDCs detector front view.

Mechanical design of the fluorescence-based EDCs detector.




Water Gate

The water gate in our model is controlled by a step motor, and the screw bar in the middle of the gate enable the step motor to control the rising and lowering of the gate. The mechanism of the rising and lowering depends on the EDCs concentration sensed by our fluorescence-based EDCs detector. When the EDCs concentration exceeds the safety value or the flow rate is too fast, the microcontroller in the detector will automatically send out a control signal to lower the gate to protect the farmland.

water gate front view and side view

Block Diagram for Water Gate Control