Difference between revisions of "Team:IIT Delhi/HP/Gold Integrated"

 
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<div class = "navbar ">
 
<div class = "navbar ">
 
 
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                                                         <button class="dropbtn1"><a href="https://2017.igem.org/Team:IIT_Delhi">iGEM IIT Delhi</a></button>
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                                                         <button class="dropbtn2"><a href="https://2017.igem.org/Team:IIT_Delhi">iGEM IIT Delhi</a></button>
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<div class = "right_menu">
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        <div class = "right_menu">
 
   <div class="dropdown">
 
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     <button class="dropbtn">Project  
 
     <button class="dropbtn">Project  
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     </button>
 
     </button>
 
     <div class="dropdown-content">
 
     <div class="dropdown-content">
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       <a href="/Team:IIT_Delhi/Description">Description</a>
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       <a href="/Team:IIT_Delhi/Description">Overview</a>
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       <a href="/Team:IIT_Delhi/Results">Results</a>
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       <a href="/Team:IIT_Delhi/Design">Squarewave Generator</a>
  
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       <a href="/Team:IIT_Delhi/Interlab">Interlab</a>
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       <a href="/Team:IIT_Delhi/InterLab">Interlab</a>
 
     </div>
 
     </div>
 
   </div>  
 
   </div>  
 
                                                         <div class="dropdown">
 
                                                         <div class="dropdown">
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    <button class="dropbtn">Results
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    <i class="fa fa-caret-down"></i>
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    </button>
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    <div class="dropdown-content">
 +
      <a href="/Team:IIT_Delhi/Circuit_Design">Circuit design and construction</a>
 +
      <a href="/Team:IIT_Delhi/Microfluidics">Microfluidics and Fluorescence</a>
 +
      <a href="/Team:IIT_Delhi/Photobleaching">Photobleaching</a>
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      <a href="/Team:IIT_Delhi/Promoter">Promoter strength</a>
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                                                      <a href="/Team:IIT_Delhi/Oscillations">Oscillations</a>
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  </div>
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       <a href="/Team:IIT_Delhi/Improved_Part">Improved Parts</a>
 
       <a href="/Team:IIT_Delhi/Improved_Part">Improved Parts</a>
 
       <a href="/Team:IIT_Delhi/Part_Collection">Part Collection</a>
 
       <a href="/Team:IIT_Delhi/Part_Collection">Part Collection</a>
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     </div>
 
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     <button class="dropbtn">Modeling
 
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       <a href="/Team:IIT_Delhi/Model">Overview</a>
 
       <a href="/Team:IIT_Delhi/Model">Overview</a>
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       <a href="/Team:IIT_Delhi/Database">Simulation Database</a>
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       <a href="/Team:IIT_Delhi/Write_Model">Writing a Model</a>
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                                                        <a href="/Team:IIT_Delhi/Deterministic_Model">Deterministic Model </a>
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                                                        <a href="/Team:IIT_Delhi/Stochastic_Model">Stochastic Model</a>
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                                                        <a href="/Team:IIT_Delhi/Bifurcation">Bifurcation and Squareness</a>
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                                                        <a href="/Team:IIT_Delhi/Resources">Resource sharing</a>
 
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       <a href="/Team:IIT_Delhi/Engagement">Public Engagement</a>
 
       <a href="/Team:IIT_Delhi/Engagement">Public Engagement</a>
 
       <a href="/Team:IIT_Delhi/Collaborations">Collaborations</a>
 
       <a href="/Team:IIT_Delhi/Collaborations">Collaborations</a>
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                                                        <a href="/Team:IIT_Delhi/Safety">Safety</a>
 
     </div>
 
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                                                        <a href="/Team:IIT_Delhi/Collaborations">Overview</a>
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      <a href="/Team:IIT_Delhi/GMM_legislation">GMM Legislation</a>
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      <a href="/Team:IIT_Delhi/berlin">iGEM Berlin</a>
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      <a href="/Team:IIT_Delhi/mohali">Mentoring IISER Mohali</a>
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      <a href="/Team:IIT_Delhi/glasgow">iGEM Glasgow</a>
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             <h2 class="h2font">INTEGRATED HUMAN PRACTICES</h2>
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             <h2 class="h2font">Integrated Human Practices</h2>
  
 
             <p> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 
             <p> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</h2>
 
</h2>
 
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           <button class="accordion back1" style="font-weight: bold;">Talk With Prof.Shaunak Sen</button>
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           <button class="accordion back1" style="font-weight: bold;">Talk With Prof. Shaunak Sen</button>
 
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<h2 id="pfont1"><br> He is a Professor at our institute and does research in control Theory.Just when we had started Brainstorming for our Project,we reached out to him and talked to him about square wave oscillator that we were planning to make.It was him who suggested us about the idea of using an oscillator feeding into a toggle switch in order to generate Square Waves.He further also talked to us about the work Dr.Richard M Murray had done in this field oscillators with ring topologies. He also told us about trying out the relaxation oscillators in order to generate a better Square wave.
+
<h2 id="pfont1"><br> Dr. Shaunak Sen is a Professor at the Department of Electrical Engineering at our Institute, specialising in Control Theory. When we started brainstorming over our project, we reached out to him for advice about square wave oscillators that we were planning to design. It was he who suggested to us the idea of using an oscillator feeding into a toggle switch in order to generate Square Waves. He further introduced to us the work Dr. Richard M Murray had done on oscillators with ring topologies. He also told us about trying out relaxation oscillators in order to generate a better Square wave response.
  
 
</h2>
 
</h2>
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<left>
  
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<h2 id="pfont1"><br> He is a Professor at the School of Biological Sciences,Delhi.His research is mainly focussed in the field of Systems Biology.Once we had decided on the topology for our project.we discussed with him at length about our project and also got a lot of help from him in our Square wave Modelling.However,he wasn’t much impressed by our topology and rather suggested to us about the use of  Build up and fire kind of oscillator for a better generation of Square Waves.
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<h2 id="pfont1"><br>Dr. James Gomes is a Professor at the School of Biological Sciences, IIT Delhi. His research mainly revolves around the field of Systems Biology. Once we had decided the topology for our project, we discussed with him at length about possible improvements and also got a lot of help from him in our Square wave Modelling. However, he wasn’t very convinced by our topology and rather suggested to us to use 'build up and fire' kind of oscillators for better generation of Square Waves.
 
</h2>
 
</h2>
 
 
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<left>
  
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<h2 id="pfont1"><br>He is a molecular Biologist at the Department of Biological Sciences,IIT Delhi.
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<h2 id="pfont1"><br>Dr. Perumal is a Molecular Biologist at the School of Biological Sciences, IIT Delhi.
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Our talk with him was truly very helpful for us in the execution of our project. It was him who suggested us about the Streptomyces griseus (Orf2) whose biosafety facilities were available at our lab.
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Our talk with him was indeed very helpful to us in the execution of our project. It was he who suggested to us the strain Streptomyces griseus (Orf2) whose biosafety facilities were available at our lab.
  
 
</h2>
 
</h2>
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           </div>
 
           </div>
  
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<button class="accordion back4" style="font-weight: bold;">Talk With Mr Mahendra Sahare </button>
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<button class="accordion back4" style="font-weight: bold;">Talk With Mr. Mahendra Sahare </button>
 
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<h2 id="pfont1"><br>A PhD student, Mr. Mahendra Sahare, doing a humanities project under a Supreme Court lawyer, Dr. Naveen Thayyil, has been in collaboration with iGEM IIT Delhi for the past two years. Together, we have worked on the aspect of ‘Ethical Scientific Practices’. Also, on his recent visit to IISER Mohali, he came back with a collaborative offer for iGEM IIT Delhi to mentor IISER Mohali and help in the establishment of iGEM club there. On our return from the Giant Jamboree 2016, our team members gave a presentation scheduled there, and thereafter our
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<h2 id="pfont1"><br>Mr. Mahendra Sahare, is a PhD scholar at the Department of Humanities doing a project under a Supreme Court lawyer, Dr. Naveen Thayyil. He has been in collaboration with iGEM IIT Delhi for the past two years. Together, we have worked on the aspect of ‘Ethical Scientific Practices’. Also, on his recent visit to IISER Mohali, he came back with a collaborative offer for iGEM IIT Delhi to mentor IISER Mohali and help in the establishment of an iGEM team there. On our return from the Giant Jamboree 2016, our team members gave a presentation there, and thereafter our team mentored the iGEM Mohali team.
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team mentored the iGEM Mohali team.
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<h2 id="pfont"><br><br>We also talked to many researchers pursuing their Ph.D here in IIT Delhi,to get to know about various possible uses of Biological Oscillators,before we started our project.
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<h2 id="pfont"><br><br>We also talked to many researchers pursuing their Ph.D here at IIT Delhi, to get to know about various possible uses of Biological Oscillators, before we started our project.
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Here are the their views on how Biological Oscillators can be used further.<br>
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Here are their views on how Biological Oscillators can be used in various applications.<br><br>
  
 
</h2>
 
</h2>
  
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<button class="accordion back1" style="font-weight: bold;">Talk With Mr.B Venkat</button>
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<button class="accordion back1" style="font-weight: bold;">Talk With Mr. B Venkat</button>
 
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           <h2 id="pfont1"><br> He is researcher in the field of System biology/oscillators.In our talk with him,he told us that Biological Oscillators can be used as a clock reference analogous to electrical engineering for signal processing,as a bridge between network of them.synchronisation and as a modem “MODEM” carrying Information .
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           <h2 id="pfont1"><br> Mr. Venkat is a researcher in the field of Systems Biology. In our discussion with him, he told us that Biological Oscillators can be used as a clock reference analogous to those in electrical engineering used for signal processing, particularly as a bridge between networks for synchronisation and as a "modem" carrying information.
 
</h2>
 
</h2>
  
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<left>
  
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           <h2 id="pfont1"><br> He is a researcher in synchronisation non linear linear oscillators.According to him,Biological Oscillators can be used in the Field of repressilator or vanderpol oscillator and  in the field of cancer cells.
+
           <h2 id="pfont1"><br>A researcher by profession, he works in the field of synchronisation of non-linear and linear oscillators. His guidance over the subject of Biological Oscillators allowed us to use gene regulatory networks in circuits similar to the repressilator.
 
</h2>
 
</h2>
  
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<button class="accordion back3" style="font-weight: bold;">Talk With Mr.Madanmohan</button>
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<button class="accordion back3" style="font-weight: bold;">Talk With Mr. Madanmohan</button>
 
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           <div class="panel">
 
<!--<u><b><h4 id="pfont"  style="font-size: 90%;"></h4></b></u>-->
 
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             <h2 id="pfont1"><br>He does Research in field of convergent systems.He told us about how Biological oscillators can be linked up to his field of research.According to him,If the oscillator is tuned to be convergent,then many interesting phenomenon like time-scale,synchronisation can be analysed better.
+
             <h2 id="pfont1"><br>He is a researcher in the field of convergent systems. He told us about how Biological oscillators can have several applications in his field of research. According to him, if the oscillator is tuned to be convergent, then many interesting phenomena like time-scales and synchronisation can be analysed better.
 
  </h2>
 
  </h2>
  

Latest revision as of 22:27, 1 November 2017

iGEM IIT Delhi

Overview Squarewave Generator Interlab
Circuit design and construction Microfluidics and Fluorescence Photobleaching Promoter strength Oscillations
Basic Parts Composite Parts Improved Parts Part Collection
Overview Writing a Model Deterministic Model Stochastic Model Bifurcation and Squareness Resource sharing
Human Practices Integrated Practices Public Engagement Collaborations Safety
Overview GMM Legislation iGEM Berlin Mentoring IISER Mohali iGEM Glasgow
Lab Records Protocols Recipes Medal Criteria
The Team Attributions

Integrated Human Practices

                                                                                                                                                                                                                 

To get a better idea of how can we improve and move ahead with our project,we first set out to talk to some of the researchers and professors of various departments, both inside our institute and outside. Following is a summary of the talk that we had :


Dr. Shaunak Sen is a Professor at the Department of Electrical Engineering at our Institute, specialising in Control Theory. When we started brainstorming over our project, we reached out to him for advice about square wave oscillators that we were planning to design. It was he who suggested to us the idea of using an oscillator feeding into a toggle switch in order to generate Square Waves. He further introduced to us the work Dr. Richard M Murray had done on oscillators with ring topologies. He also told us about trying out relaxation oscillators in order to generate a better Square wave response.



Dr. James Gomes is a Professor at the School of Biological Sciences, IIT Delhi. His research mainly revolves around the field of Systems Biology. Once we had decided the topology for our project, we discussed with him at length about possible improvements and also got a lot of help from him in our Square wave Modelling. However, he wasn’t very convinced by our topology and rather suggested to us to use 'build up and fire' kind of oscillators for better generation of Square Waves.



Dr. Perumal is a Molecular Biologist at the School of Biological Sciences, IIT Delhi. Our talk with him was indeed very helpful to us in the execution of our project. It was he who suggested to us the strain Streptomyces griseus (Orf2) whose biosafety facilities were available at our lab.



Mr. Mahendra Sahare, is a PhD scholar at the Department of Humanities doing a project under a Supreme Court lawyer, Dr. Naveen Thayyil. He has been in collaboration with iGEM IIT Delhi for the past two years. Together, we have worked on the aspect of ‘Ethical Scientific Practices’. Also, on his recent visit to IISER Mohali, he came back with a collaborative offer for iGEM IIT Delhi to mentor IISER Mohali and help in the establishment of an iGEM team there. On our return from the Giant Jamboree 2016, our team members gave a presentation there, and thereafter our team mentored the iGEM Mohali team.




We also talked to many researchers pursuing their Ph.D here at IIT Delhi, to get to know about various possible uses of Biological Oscillators, before we started our project. Here are their views on how Biological Oscillators can be used in various applications.


Mr. Venkat is a researcher in the field of Systems Biology. In our discussion with him, he told us that Biological Oscillators can be used as a clock reference analogous to those in electrical engineering used for signal processing, particularly as a bridge between networks for synchronisation and as a "modem" carrying information.



A researcher by profession, he works in the field of synchronisation of non-linear and linear oscillators. His guidance over the subject of Biological Oscillators allowed us to use gene regulatory networks in circuits similar to the repressilator.



He is a researcher in the field of convergent systems. He told us about how Biological oscillators can have several applications in his field of research. According to him, if the oscillator is tuned to be convergent, then many interesting phenomena like time-scales and synchronisation can be analysed better.





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