Difference between revisions of "Team:NUDT CHINA/Part Collection"

 
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                    <h1 class="main-title">Part Collection</span></h1>
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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2017.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2017.igem.org/Judging/Awards"> award listed above</a>. </p>
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<p class="content-subhead">Part list</p>
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<p >This part collection is a collection of miRNA target sequences, contained 26 new parts designed for miRNA locker assembly. In this collection, we collected reverse complementary sequence of miRNAs. Building on that, we can obtain modularized DNA parts by annealing, and then construct a set of chemically synthetic oligo DNA library. Our miRNA locker can be easily assembled using modularized DNA parts from this chemically synthetic oligo DNA library. Most of the parts in this kit were functional validated and submitted to the registry, expect for BBa_K2440016 and BBa_K2440034, as they are not compatible with RFC10.</p>
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<center>
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<table class=" pgrouptable tablesorter" style="width: 80%;" cellpadding="0" cellspacing="0">
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<thead>
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<tr><th style="width:8px" class="header"></th><th style="width:8px" class="header"></th><th style="width:8px" class="header headerSortUp"></th><th style="width: 87px;" class="header">Name</th><th style="width: 80px" colspan="" class="header">Type</th><th style="width: auto;" colspan="" class="header">Description</th><th style="width: 150px" colspan="" class="header">Designer</th><th style="width: 50px" colspan="" class="header">Length</th>
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</tr></thead><tbody>
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 +
<tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440011">BBa_K2440011</a></td><td>DNA</td><td>let-7a target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440012">BBa_K2440012</a></td><td>DNA</td><td>miR-4470 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440013">BBa_K2440013</a></td><td>DNA</td><td>miR-16 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440014">BBa_K2440014</a></td><td>DNA</td><td>miR-195 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440015">BBa_K2440015</a></td><td>DNA</td><td>miR-654 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440016">BBa_K2440016</a></td><td>DNA</td><td>miR-511 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440017">BBa_K2440017</a></td><td>DNA</td><td>miR-875 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440018">BBa_K2440018</a></td><td>DNA</td><td>miR-384 target sequence</td><td width="100px">Qijie Xu</td><td align="right">20</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440019">BBa_K2440019</a></td><td>DNA</td><td>miR-2467 target sequence</td><td width="100px">Qijie Xu</td><td align="right">23</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440020">BBa_K2440020</a></td><td>DNA</td><td>miR-184 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440021">BBa_K2440021</a></td><td>DNA</td><td>miR2118l target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440022">BBa_K2440022</a></td><td>DNA</td><td>miR418 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440023">BBa_K2440023</a></td><td>DNA</td><td>miR1441 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440024">BBa_K2440024</a></td><td>DNA</td><td>miR817 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440025">BBa_K2440025</a></td><td>DNA</td><td>miR165a target sequence</td><td width="100px">Qijie Xu</td><td align="right">20</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440026">BBa_K2440026</a></td><td>DNA</td><td>miR160b target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440027">BBa_K2440027</a></td><td>DNA</td><td>miR397b target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
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<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440028">BBa_K2440028</a></td><td>DNA</td><td>miR4249 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440029">BBa_K2440029</a></td><td>DNA</td><td>miR-458 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440030">BBa_K2440030</a></td><td>DNA</td><td>miR-152 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440031">BBa_K2440031</a></td><td>DNA</td><td>miR-155 target sequence</td><td width="100px">Qijie Xu</td><td align="right">22</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440032">BBa_K2440032</a></td><td>DNA</td><td>miR-489 target sequence</td><td width="100px">Qijie Xu</td><td align="right">23</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440033">BBa_K2440033</a></td><td>DNA</td><td>miR3476 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440034">BBa_K2440034</a></td><td>DNA</td><td>miR172 target sequence</td><td width="100px">Qijie Xu</td><td align="right">21</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440035">BBa_K2440035</a></td><td>DNA</td><td>miR7491 target sequence</td><td width="100px">Qijie Xu</td><td align="right">24</td>
 +
</tr><tr>
 +
<td class="status_cell  "></td><td class="status_cell cell_white">&nbsp;</td><td class="status_cell cell_white">&nbsp;</td><td><a class="noul_link part_link" href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2440036">BBa_K2440036</a></td><td>DNA</td><td>miR7514 target sequence</td><td width="100px">Qijie Xu</td><td align="right">24</td>
 +
</tr></tbody>
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 +
        }
 +
        // The className is not found
 +
        if (length === classes.length) {
 +
            classes.push(className);
 +
        }
  
 +
        element.className = classes.join(' ');
 +
    }
  
−
<h1> Part Collection </h1>
+
    function toggleAll(e) {
 +
        var active = 'active';
  
 +
        e.preventDefault();
 +
        toggleClass(layout, active);
 +
        toggleClass(menu, active);
 +
        toggleClass(menuLink, active);
 +
    }
  
−
<p>Did your team make a lot of great parts? Is there a theme that ties all your parts together? Do you have more than 10 parts in this collection? Did you make a CRISPR collection, a MoClo collection, or a collection of awesome pigment parts? Describe your parts collection on this page, so the judges can evaluate you for the Best Part Collection award.</p>
+
    menuLink.onclick = function (e) {
 +
        toggleAll(e);
 +
    };
  
−
<p>
+
    content.onclick = function(e) {
−
While you should put all the characterization information for your parts on the Registry, you are encouraged to explain how all your parts form a collection on this page.  
+
        if (menu.className.indexOf('active') !== -1) {
−
</p>
+
            toggleAll(e);
−
<br>
+
        }
−
<h3>Best Part Collection Special Prize</h3>
+
    };
−
<p>Did your team make a lot of great parts? Is there a team that ties all your parts together? Do you have more than 10 parts in this collection? Did you make a CRISPR collection, a MoClo collection or a collection of awesome pigment parts? Tell the judges you should be evaluated for the Best Parts Collection award! To be eligible for this award, these parts must adhere to <a href="http://parts.igem.org/DNA_Submission">Registry sample submission guidelines</a> and have been sent to the Registry of Standard Biological Parts.
+
−
<br><br>
+
−
If you have a collection of parts you wish to nominate your team for this <a href="https://2017.igem.org/Judging/Awards">special prize</a>, make sure you add your part numbers to your <a href="https://2017.igem.org/Judging/Judging_Form">judging form</a> and delete the box at the top of this page.</p>
+
−
<br>
+
  
 +
}(this, this.document));
 +
</script>
  
 +
<script type="text/javascript" >
 +
    function Show(tagId) {
 +
    if (document.getElementById(tagId).style.display=="none") {
 +
    document.getElementById(tagId).style.display="block";
 +
   
 +
    }
 +
    else {
 +
    document.getElementById(tagId).style.display="none";
 +
    }
 +
    }
 +
</script>
 +
<script type="text/javascript" >
 +
(function() {
  
−
<div class="highlight">
+
    var width, height, largeHeader, canvas, ctx, circles, target, animateHeader = true;
−
<h4>Note</h4>
+
−
<p>This page should list all the parts in the collection your team made during your project. You must add all characterization information for your parts on the Registry. You should not put characterization information on this page.</p>
+
  
−
</div>
+
    // Main
 +
    initHeader();
 +
    addListeners();
  
−
</div>
+
    function initHeader() {
 +
        width = window.innerWidth;
 +
        height = window.innerHeight;
 +
        target = {x: 0, y: height};
 +
 
 +
        largeHeader = document.getElementById('large-header');
 +
        largeHeader.style.height = height+'px';
 +
 
 +
        canvas = document.getElementById('demo-canvas');
 +
        canvas.width = width;
 +
        canvas.height = height;
 +
        ctx = canvas.getContext('2d');
 +
 
 +
        // create particles
 +
        circles = [];
 +
        for(var x = 0; x < width*0.5; x++) {
 +
            var c = new Circle();
 +
            circles.push(c);
 +
        }
 +
        animate();
 +
    }
 +
 
 +
    // Event handling
 +
    function addListeners() {
 +
        window.addEventListener('scroll', scrollCheck);
 +
        window.addEventListener('resize', resize);
 +
    }
 +
 
 +
    function scrollCheck() {
 +
        if(document.body.scrollTop > height) animateHeader = false;
 +
        else animateHeader = true;
 +
    }
 +
 
 +
    function resize() {
 +
        width = window.innerWidth;
 +
        height = window.innerHeight;
 +
        largeHeader.style.height = height+'px';
 +
        canvas.width = width;
 +
        canvas.height = height;
 +
    }
 +
 
 +
    function animate() {
 +
        if(animateHeader) {
 +
            ctx.clearRect(0,0,width,height);
 +
            for(var i in circles) {
 +
                circles[i].draw();
 +
            }
 +
        }
 +
        requestAnimationFrame(animate);
 +
    }
 +
 
 +
    // Canvas manipulation
 +
    function Circle() {
 +
        var _this = this;
 +
 
 +
        // constructor
 +
        (function() {
 +
            _this.pos = {};
 +
            init();
 +
            console.log(_this);
 +
        })();
 +
 
 +
        function init() {
 +
            _this.pos.x = Math.random()*width;
 +
            _this.pos.y = height+Math.random()*100;
 +
            _this.alpha = 0.1+Math.random()*0.3;
 +
            _this.scale = 0.1+Math.random()*0.3;
 +
            _this.velocity = Math.random();
 +
        }
 +
 
 +
        this.draw = function() {
 +
            if(_this.alpha <= 0) {
 +
                init();
 +
            }
 +
            _this.pos.y -= _this.velocity;
 +
            _this.alpha -= 0.0005;
 +
            ctx.beginPath();
 +
            ctx.arc(_this.pos.x, _this.pos.y, _this.scale*10, 0, 2 * Math.PI, false);
 +
            ctx.fillStyle = 'rgba(255,255,255,'+ _this.alpha+')';
 +
            ctx.fill();
 +
        };
 +
    }
  
 +
})();
 +
</script>
 +
</body>
 
</html>
 
</html>

Latest revision as of 00:10, 2 November 2017

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JUDGING FORM

Part Collection

Part list

This part collection is a collection of miRNA target sequences, contained 26 new parts designed for miRNA locker assembly. In this collection, we collected reverse complementary sequence of miRNAs. Building on that, we can obtain modularized DNA parts by annealing, and then construct a set of chemically synthetic oligo DNA library. Our miRNA locker can be easily assembled using modularized DNA parts from this chemically synthetic oligo DNA library. Most of the parts in this kit were functional validated and submitted to the registry, expect for BBa_K2440016 and BBa_K2440034, as they are not compatible with RFC10.

NameTypeDescriptionDesignerLength
  BBa_K2440011DNAlet-7a target sequenceQijie Xu22
  BBa_K2440012DNAmiR-4470 target sequenceQijie Xu21
  BBa_K2440013DNAmiR-16 target sequenceQijie Xu22
  BBa_K2440014DNAmiR-195 target sequenceQijie Xu21
  BBa_K2440015DNAmiR-654 target sequenceQijie Xu22
  BBa_K2440016DNAmiR-511 target sequenceQijie Xu21
  BBa_K2440017DNAmiR-875 target sequenceQijie Xu21
  BBa_K2440018DNAmiR-384 target sequenceQijie Xu20
  BBa_K2440019DNAmiR-2467 target sequenceQijie Xu23
  BBa_K2440020DNAmiR-184 target sequenceQijie Xu22
  BBa_K2440021DNAmiR2118l target sequenceQijie Xu22
  BBa_K2440022DNAmiR418 target sequenceQijie Xu21
  BBa_K2440023DNAmiR1441 target sequenceQijie Xu21
  BBa_K2440024DNAmiR817 target sequenceQijie Xu21
  BBa_K2440025DNAmiR165a target sequenceQijie Xu20
  BBa_K2440026DNAmiR160b target sequenceQijie Xu22
  BBa_K2440027DNAmiR397b target sequenceQijie Xu21
  BBa_K2440028DNAmiR4249 target sequenceQijie Xu21
  BBa_K2440029DNAmiR-458 target sequenceQijie Xu22
  BBa_K2440030DNAmiR-152 target sequenceQijie Xu22
  BBa_K2440031DNAmiR-155 target sequenceQijie Xu22
  BBa_K2440032DNAmiR-489 target sequenceQijie Xu23
  BBa_K2440033DNAmiR3476 target sequenceQijie Xu21
  BBa_K2440034DNAmiR172 target sequenceQijie Xu21
  BBa_K2440035DNAmiR7491 target sequenceQijie Xu24
  BBa_K2440036DNAmiR7514 target sequenceQijie Xu24