Difference between revisions of "Team:BNU-China/HP/Gold Integrated"

 
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        <h1>Integrated Human Practice</h1>
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          This year the integrated human practice work of BNU-China 2017 iGEM team concentrated on the exploring the feasibility, safety, and potentials of the improved version of yeast surface display system. We contacted experts and technicians to discuss our design and experiment plan with them. Besides, we participated in a variety of related academic conferences to exchange ideas and gather others’ perspectives on our project. Results of these work have been proven helpful to the adjustment of the schematic design and the detailed experiment procedure. In addition, to lay down the ground work for future development, we’ve performed investigation on safety issue regarding possible applications.
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         <h2 id="title1">Interview:</h2>
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         <h2 id="title1">Change of Material -- Interview with Prof. Meng Wenxiang</h2>
        <h3>Interview with Prof. Meng Wenxiang at Institute of Genetics and Developmental Biology</h3>
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         <p>After the literature research phase, we found microtubule to be an ideal material for our extracellular enzyme loading scaffold for its self-assembly feature and its employing of modifiable subunits. Therefore, we scheduled an interview with professor Meng Wenxiang, an expert on microtubule, before we initiated our experiments.</p>
         <p>After the literature research phase, we’ve found that microtubule is a fibrous polymer which can self-assemble in vitro under suitable conditions. Its subunits are highly adaptable. Furthermore, it can interact with a series of valuable small molecules as a whole. Lastly, there are various microtubule stabilizing drugs which would help to maintain the integrity of the assembled structure. All the above features have made it suitable for the material of our extracellular enzyme loading scaffold. In order to have more insights on our ideas, we scheduled an interview with professor Meng Wenxiang, an expert on microtubule, before we initiated our experiments.</p>
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         <h4>With Prof. Meng Wenxiang at Institute of Genetics and Developmental Biology</h4>
 
         <h4>With Prof. Meng Wenxiang at Institute of Genetics and Developmental Biology</h4>
         <p>To our disappointment, professor Meng directly pointed out a fundamental flaw in our plan, which was the stability of microtubule could not meet the ideal level of the extracellular scaffold. According to his research, microtubule could not exist in vitro for more than a week even with the help of microtubule-stabilizing drugs, such as taxol® and its analogues. This defect of microtubule invalidated its potential as the material for the extracellular scaffold, but it did inspire us to look for a similar but more stable material. Later, we searched for materials that met these requirements. At last, we found flagellar filament to be the stable self-assembled biopolymer we wanted. Thanks to professor Meng’s advice, we eliminated one possible systematical cause for failure in advance.</p>
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         <p>To our disappointment, professor Meng directly pointed out a fundamental flaw in our plan, which was the stability of microtubule could not meet the ideal requirement of the extracellular scaffold. According to his research data, microtubule could not exist in vitro for more than a week even with the help of microtubule-stabilizing drugs, such as taxol<sup>®</sup> and its analogues. This defect of microtubule invalidated its potential as the extracellular scaffold material, but it did inspire us to look for a similar but more stable material. So we began our search for materials that met these requirements. Shortly after, we found flagellar filament to be the stable self-assembled biopolymer we wanted. Thanks to professor Meng's advice, we eliminated one possible systematical cause for failure in advance.</p>
         <h3>Interview with Prof. Zhang Linqi and Her PhD. Students at Tsinghua University</h3>
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         <h2 id="title2">Improvement on Experiment Protocol -- Interview with Prof. Zhang Linqi and Her PhD. Students</h2>
         <p>Since we were new to this technique, and it’s imperative for us to broaden the horizon of our perception on this technique by all means possible. Hence, we went to Tsinghua University to consult professor Zhang Linqi and her PhD. students, who had tons of experiences and knowledge base on this technique. </p>
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         <p>Since we were new to this technique, and it's imperative for us to enlarge the knowledge base we had on this technique. Hence, we went to Tsinghua University to consult professor Zhang Linqi and her PhD. students, who had tons of experiences and knowledge on this technique. </p>
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         <img style="width:42%;left:29%;" src="https://static.igem.org/mediawiki/2017/6/66/T--BNU-China--IHP2.jpg" alt="Sorry, the image is not spupported by your browser.">
 
         <h4>With PhD. Zhou Panpan at Qinghua University</h4>
 
         <h4>With PhD. Zhou Panpan at Qinghua University</h4>
         <p>After our presentation, we received positive feedbacks for professor Zhang and doctor Zhou Panpan. They both considered our project to be promising and would severely increase the capacity of the original system. As for the problems we had encountered in the wet lab, they kindly offered us with practical solutions and helpful advices drawn from their first-hand experience, which significantly elevated the efficiency of our experiment process.</p>
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         <p>After our presentation, we received positive feedbacks for professor Zhang and doctor Zhou Panpan. They both considered our project to be promising and would severely increase the capacity of the original system. As for the problems we had encountered in the wet lab, they kindly offered us with practical solutions, helpful advices, and their first-hand experience, which significantly elevated the efficiency of our experiment process.</p>
         <h3>Interview with Director of Research, Prof. XXX, of Beijing Smistyle Sci. & Tech. Development Co., LTD.</h3>
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         <h2 id="title3">Modification on Enzyme Choice -- Interview with Director of Research of Beijing Smistyle Sci. & Tech. Development Co., LTD.</h2>
         <p>According to our research findings, Xynase, an enzyme from cellulase enzyme system, had been applied to substitute the variable D2 domain of flagellin FliC, and the adapted falgellins were successfully assembled into a functioning nano enzyme stick. Then it occurred to us to use the cellulose system as the prototype to test if our approach can increase the catalytic efficiency. To better define the contrast group for the comparison and to better portrait the actual using condition, we contacted Beijing Smistyle Sci. & Tech. Development Co., LTD, whose products covered all three enzymes in this system. We made an appointment with Doc. Zhao, the director of research of Smistyle.</p>
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         <p>According to our research findings, Xynase, an enzyme from cellulase enzyme system, had been applied to substitute the variable D2 domain of flagellin FliC, and the adapted falgellins were successfully assembled into a functioning nano enzyme stick. Then it occurred to us to use the cellulose system to build a prototype to test if our approach can increase the catalytic efficiency. To better define the contrast group for comparison and to better portrait the actual using condition, we contacted Beijing Smistyle Sci. & Tech. Development Co., LTD, whose products covered all three enzymes in the cellulase enzyme system. We made an appointment with Doc. Zhao Lifang, the director of research of Smistyle.</p>
         <img src="https://static.igem.org/mediawiki/2017/4/4a/T--BNU-China--IHP3.jpg" alt="Sorry, the image is not spupported by your browser.">
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         <img style="width:42%;left:29%;" src="https://static.igem.org/mediawiki/2017/4/4a/T--BNU-China--IHP3.jpg" alt="Sorry, the image is not spupported by your browser.">
 
         <h4>With director of research at Beijing Smistyle Sci. & Tech. Development Co., LTD</h4>
 
         <h4>With director of research at Beijing Smistyle Sci. & Tech. Development Co., LTD</h4>
         <p>Doc. Zhao listened to our power-point presentation attentively, and expressed her sincere appreciation for our project. Nevertheless, she indicated that the application of our improved system on cellulase enzyme system was not well-suited. The cost of manufacture of these enzymes had already been optimized to be very low, which made it economically unwise to go through sophisticated recycle procedure for repeated use instead of simply producing a large quantity of them and as disposable additions.</p>
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         <p>Doc. Zhao listened to our power-point presentation attentively, and expressed her sincere appreciation for our project. Nevertheless, she indicated that the application of our improved system on cellulase enzyme system wouldn't fully exhibit the advantages of our improvement. The cost of manufacturing these enzymes had already been optimized to be very low, which made it economically unwise to go through sophisticated recycle procedure for repeated use instead of simply producing a large quantity of them as disposable additions.</p>
         <p>At the end of the interview, Doc. Zhao shared her thoughts on the suitable application for our system. Obviously, our target enzyme should be the ones that are hard to produce but highly valuable. This would make the choice of recycle with our system preferable than producing in quantity with a high cost. With these guidelines, we selected PETase (Part:BBa_K1921003加超链接), which can hydrolyze PET in low temperature.</p>
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         <p>At the end of the interview, Doc. Zhao shared her thoughts on more suitable application for our system. Obviously, our target enzyme should be the ones that are hard to produce but highly valuable. This would make the choice of recycle with our system preferable than producing in quantity with a high cost. With these guidelines, we selected <a href="http://parts.igem.org/Part:BBa_K1921003">PETase</a>, which can hydrolyze PET in low temperature.</p>
        <h2 id="title2">Conference:</h2>
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        <h3>CCiC:</h3>
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        <p>During Aug. 25 - 28, 2017, CCiC conference was organized and held by Fujian Agriculture and Forestry University in Fuzhou, China. Our team, BNU-China, had the chance to attend the event. During the conference, we introduced our project to the other xx teams.</p>
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        <img src="https://static.igem.org/mediawiki/2017/d/d4/T--BNU-China--IHP4.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Photo of all participants at CciC</h4>
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        <img src="https://static.igem.org/mediawiki/2017/a/af/T--BNU-China--IHP5.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Our iGEMer explaining our project to other iGEMers</h4>
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        <img src="https://static.igem.org/mediawiki/2017/8/89/T--BNU-China--IHP6.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Our iGEMer explaining our project to other iGEMers</h4>
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        <p>In the conference, each team conducted in-depth communication and exchanged ideas on their own projects. The inspiring spark collided by thoughts and innovation among the teams made the attendees reap substantial benefits. After careful preparation, we dissected our project into following parts, background, project, design, modeling and human practice. Meantime, we also held open attitude towards the sincere suggestions and comments from other teams.</p>
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        <p>In the conference, not only did we strengthen the relationship with FAFU-CHINA, but we established new bonds with other teams as well. And the communication and mutual learning among the teams provided us with the opportunity to broaden our horizon and help us acquaint more people with our project.</p>
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        <h3>Other Conferences:</h3>
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        <p>Other than the CCiC conferences, we’ve also participated in some other academic events, including 2017 National Academic Conference for Cell Biology(Chinese Society For Cell Biology, CSCB), 2017 Synthetic Biology Summer Camp(Center for Synthetic Biology Engineering Research, CSynBER), xxx(国科大), meet-up with Team Tsinghua and Team Tsinghua-A .We took every chance to have our project scrutinized by experts, researchers, and other iGEMers. At the same time, we’ve deepened our understandings on synthetic biology and areas related to our project. </p>
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        <img src="https://static.igem.org/mediawiki/2017/4/4f/T--BNU-China--IHP7.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Our iGEMer at 2017 Synthetic Biology Summer Camp:Center for Synthetic Biology Engineering Research, CSynBER</h4>
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        <img src="https://static.igem.org/mediawiki/2017/6/64/T--BNU-China--IHP8.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Our iGEMer at 2017 National Academic Conference for Cell Biology:Chinese Society For Cell Biology, CSCB</h4>
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        <img src="https://static.igem.org/mediawiki/2017/f/f4/T--BNU-China--IHP9.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Meet-up with Team Tsinghua & Team Tsinghua-A</h4>
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        <h2 id="title3">Investigation:</h2>
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        <p>During the CCiC presentation, we were inspired by the wide-ranging examination on biosafety issue team Peking presented. Considering the possible application of our system, we’ve decided to conduct an investigation on the perception of average customers held towards the biosafety issues on daily-life-related enzyme containing products.</p>
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    <h3>Other Conferences:</h3>
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        <p>We independently designed an online questionnaire, collected 451 responses and analyzed the data using SOJUMP. The analysis is as follows.
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        </p>
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        <h3>Demographic Variables:</h3>
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        <p>1.  Gender and Age
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        ###################这里想要加粗显示############################
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        </p>
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        <p>The male-female ratio of respondents was not the ideal 1:1. This result might be caused by the imbalanced gender composition of our school, but we don’t think this imbalance have a major impact on the overall outcomes. Other than that, this is a interesting character of our school. The respondents were of all ages, whereas the majority population (78%) were young people between 18 to 29 years old.
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        </p>  
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        <img src="https://static.igem.org/mediawiki/2017/b/b2/BNU-China--ITHP-ENZYME1%262.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Gender and age composition </h4>
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        <p>2.  Occupation
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        ###################这里想要加粗显示############################
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        </p>
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        <p>The respondents were from all sorts of fields with a majority make-up of students (84%), owing to our educational surroundings.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/7/77/T--BNU-China--ITHP-ENZYME3.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Ocupation</h4>   
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        <p>3.  Education Qualification
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        ###################这里想要加粗显示############################
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        </p>
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        <p>In the sample population, the educational qualification of majority was undergraduate degree or above, accounting for 77.17% of all respondents.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/a/a0/T--BNU-China--ITHP-ENZYME4.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Education qualification</h4>
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        <h3>General Awareness:</h3>
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        <p>Most of the respondents had heard of biological enzyme preparation. 23% had a certain understanding of the it. Only 18% had no idea of this concept.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/9/97/T--BNU-China--ITHP-ENZYME5.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>General awareness</h4>
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        <h3>Application Fields:</h3>
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        <p>Almost all of the respondents knew that there ewre enzymes in food and medicine. In addition, quite a few people knew the enzymes could be used in environmental protection due to the risen attention paid to this area.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/c/cf/T--BNU-China--ITHP-ENZYME6.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Application fields known by the participants</h4>
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        <h3>Advantages:</h3>
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        <p>In most people's opinion, the advantages of biological enzymes were the high efficiency of the production process and the high purity of the product.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/6/64/T--BNU-China--ITHP-ENZYME7.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Advantages of biological enzyme preparation known by the participants</h4>   
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        <h3>Products:</h3>
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        <p>Survey results showed that the common product as detergent, beer, yogurt and medicine had received more attention in daily life.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/5/55/T--BNU-China--ITHP-ENZYME8.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Biological enzyme preparation products known by the participants</h4>
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        <h3>Safety Consideration:</h3>
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        <p>Nearly half chose to believe in the safety of biological enzyme preparations. While the other half said it depended on the situation, and only a tiny minority did not believe in the safety of the enzyme preparation.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/6/6c/T--BNU-China--ITHP-ENZYME9.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Safety consideration of the biological enzyme preparation</h4> 
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        <p>According the survey, most of the respondents who didn’t fully believe in the safety of biological enzyme preparation were lack of the knowledge and understanding of it.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/3/30/T--BNU-China--ITHP-ENZYME10.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Reasons for concerns over biological enzyme production</h4>
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        <p>Therefore, we believed that we could increase the public's awareness of biology enzyme preparation by promoting the knowledge of biological enzymes. So that people could gradually trust the safety of enzyme preparation.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/f/f1/T--BNU-China--ITHP-ENZYME11.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Cross analysis between safety consideration and general awareness</h4>
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        <h3>Acceptance Degree:</h3>
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        <p>This question is based on the question ‘Do you believe that the biology enzyme preparation is safe and reliable’. If the respondents didn’t take a skeptical attitude towards the biology enzyme preparation, we would raise the question to know more about whether the respondents were really willing to accept and use the products of enzyme preparation. According the survey, we found that more than half of the respondents would like to accept the products, the other said it still depends on the situation. We think the result is quite reasonable and acceptable.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/7/72/T--BNU-China--ITHP-ENZYME12-1.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Distribution of degree of acceptance</h4>
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        <h3>Impacts on daily life:</h3>
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        <p>Only 9% of the respondents hold the view that the biology enzyme preparation has nothing to do with their life. Most of the respondents believed that biological enzymes had a certain effect on their lives. This suggests that the majority of respondents' opinions on this questionnaire are valid and worthy of reference.
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        </p>
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        <img src="https://static.igem.org/mediawiki/2017/4/4d/T--BNU-China--ITHP-ENZYME13.jpg" alt="Sorry, the image is not spupported by your browser.">
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        <h4>Impacts on daily life</h4>   
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        <p>To view the original questionnaire, please click here.(超链接 目前还没法给你)
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        </p>
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<p style="text-align: center;color: #e5b051;margin-bottom:-20px;">If you like this page, you can contact us: <span style="color:#9E2B20;text-decoration: none;opacity:0.8;">bnu_igem@163.com</a></span>
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    <p style="text-align: center;color: #e5b051;margin-bottom:-20px;">If you like this page, you can contact us: <span style="color:#9E2B20;text-decoration: none;opacity:0.8;">bnu_igem@163.com</a></span>
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Latest revision as of 01:46, 2 November 2017

BNU-China ">

Integrated Human Practice

This year our integrated human practice work concentrated on improving the feasibility of our project and exploring its potentials. We contacted experts and technicians to discuss our design and experiment plan with them. Results of these work have been proven helpful to the adjustment of the schematic design and the detailed experiment procedure.

Change of Material -- Interview with Prof. Meng Wenxiang

After the literature research phase, we found microtubule to be an ideal material for our extracellular enzyme loading scaffold for its self-assembly feature and its employing of modifiable subunits. Therefore, we scheduled an interview with professor Meng Wenxiang, an expert on microtubule, before we initiated our experiments.

Sorry, the image is not spupported by your browser.

With Prof. Meng Wenxiang at Institute of Genetics and Developmental Biology

To our disappointment, professor Meng directly pointed out a fundamental flaw in our plan, which was the stability of microtubule could not meet the ideal requirement of the extracellular scaffold. According to his research data, microtubule could not exist in vitro for more than a week even with the help of microtubule-stabilizing drugs, such as taxol® and its analogues. This defect of microtubule invalidated its potential as the extracellular scaffold material, but it did inspire us to look for a similar but more stable material. So we began our search for materials that met these requirements. Shortly after, we found flagellar filament to be the stable self-assembled biopolymer we wanted. Thanks to professor Meng's advice, we eliminated one possible systematical cause for failure in advance.

Improvement on Experiment Protocol -- Interview with Prof. Zhang Linqi and Her PhD. Students

Since we were new to this technique, and it's imperative for us to enlarge the knowledge base we had on this technique. Hence, we went to Tsinghua University to consult professor Zhang Linqi and her PhD. students, who had tons of experiences and knowledge on this technique.

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With PhD. Zhou Panpan at Qinghua University

After our presentation, we received positive feedbacks for professor Zhang and doctor Zhou Panpan. They both considered our project to be promising and would severely increase the capacity of the original system. As for the problems we had encountered in the wet lab, they kindly offered us with practical solutions, helpful advices, and their first-hand experience, which significantly elevated the efficiency of our experiment process.

Modification on Enzyme Choice -- Interview with Director of Research of Beijing Smistyle Sci. & Tech. Development Co., LTD.

According to our research findings, Xynase, an enzyme from cellulase enzyme system, had been applied to substitute the variable D2 domain of flagellin FliC, and the adapted falgellins were successfully assembled into a functioning nano enzyme stick. Then it occurred to us to use the cellulose system to build a prototype to test if our approach can increase the catalytic efficiency. To better define the contrast group for comparison and to better portrait the actual using condition, we contacted Beijing Smistyle Sci. & Tech. Development Co., LTD, whose products covered all three enzymes in the cellulase enzyme system. We made an appointment with Doc. Zhao Lifang, the director of research of Smistyle.

Sorry, the image is not spupported by your browser.

With director of research at Beijing Smistyle Sci. & Tech. Development Co., LTD

Doc. Zhao listened to our power-point presentation attentively, and expressed her sincere appreciation for our project. Nevertheless, she indicated that the application of our improved system on cellulase enzyme system wouldn't fully exhibit the advantages of our improvement. The cost of manufacturing these enzymes had already been optimized to be very low, which made it economically unwise to go through sophisticated recycle procedure for repeated use instead of simply producing a large quantity of them as disposable additions.

At the end of the interview, Doc. Zhao shared her thoughts on more suitable application for our system. Obviously, our target enzyme should be the ones that are hard to produce but highly valuable. This would make the choice of recycle with our system preferable than producing in quantity with a high cost. With these guidelines, we selected PETase, which can hydrolyze PET in low temperature.

Copyright © 2017 BNU-China All rights reserved.

If you like this page, you can contact us: bnu_igem@163.com