Difference between revisions of "Team:BIT/Composite Part"

 
(11 intermediate revisions by 4 users not shown)
Line 1: Line 1:
{{BIT}}
 
 
<html>
 
<html>
 +
<head>
 +
<style>
 +
#sideMenu,#top_title{
 +
display:none;
 +
}
 +
#content{
 +
width:100%;margin:0px;padding:0px;
 +
background:#FFF;
 +
}
 +
</style>
  
  
 +
<body>
 +
<meta charset="utf-8">
 +
<meta http-equiv="X-UA-Compatible" content="IE=edge">
 +
<meta name="viewport" content="width=device-width, initial-scale=1">
 +
<!-- 上述3个meta标签*必须*放在最前面, 任何其他内容都*必须*跟随其后! -->
  
 +
<title>Dsign - Minimal portfolio Bootstrap template</title>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/bootstrap/min/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/flexslider/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/jquery.fancybox/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/main/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/responsive/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/animate/min/CSS?action=raw&amp;ctype=text/css"/>
 +
<link rel="stylesheet" href="css/font-icon.css">
 +
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.4.0/css/font-awesome.min.css">
  
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/hero-slider-style/CSS?action=raw&amp;ctype=text/css"/>                           
 +
    <!-- Hero slider style (https://codyhouse.co/gem/hero-slider/) -->
 +
 
 +
    <link rel="stylesheet" href="https://2017.igem.org/Template:BIT/templatemo-style/CSS?action=raw&amp;ctype=text/css"/>                                 
 +
    <!-- Templatemo style -->
 +
<!-- Animate.css -->
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/animate/CSS?action=raw&amp;ctype=text/css"/>
 +
<!-- Icomoon Icon Fonts-->
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/font-icon/CSS?action=raw&amp;ctype=text/css"/>
 +
<!-- Bootstrap  -->
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/bootstrap/CSS?action=raw&amp;ctype=text/css"/>
 +
<!-- Flexslider  -->
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/flexslider/CSS?action=raw&amp;ctype=text/css"/>
  
 +
<!-- Theme style  -->
 +
<link rel="stylesheet" href="https://2017.igem.org/Template:BIT/style/CSS?action=raw&amp;ctype=text/css"/>
  
 +
 +
</head>
  
<div class="column full_size">
+
<body>
<h1>Composite Parts</h1>
+
<!-- header section -->
 +
 +
<div class="fh5co-loader"></div>
 +
 +
<div id="page">
 +
<nav class="fh5co-nav" role="navigation">
 +
<div class="top-menu">
 +
<div class="container">
 +
<div class="row">
 +
<div class="col-xs-2">
 +
<div id="fh5co-logo"><a href="../index.html">BIT<span>.</span></a></div>
 +
</div>
 +
<div class="col-xs-10 text-right menu-1">
 +
<ul>
 +
 +
 +
<li class="has-dropdown">
 +
<a>Project</a>
 +
<ul class="dropdown">
 +
<li><a href="https://2017.igem.org/Team:BIT/Design">Design</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Demonstrate">Demonstrate</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Model">Model</a></li>
 +
</ul>
 +
</li>
 +
<li class="has-dropdown">
 +
<a href="https://2017.igem.org/Team:BIT/achievement"style="color:#1b8fac">Achievement</a>
 +
<ul class="dropdown">
 +
<li><a href="https://2017.igem.org/Team:BIT/Medal">Medal</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Prize">Prize</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Parts">Part</a></li>
 +
                                                                        <li><a href="https://2017.igem.org/Team:BIT/https://2017.igem.org/Team:BIT/Safety">Safety Form</a></li>
 +
</ul>
 +
</li>
 +
                       
 +
<li class="has-dropdown">
 +
<a href="https://2017.igem.org/Team:BIT/HP">Practice</a>
 +
<ul class="dropdown">
 +
<li><a href="https://2017.igem.org/Team:BIT/HP/Silver">Silver</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/HP/Gold_Integrated">Gold</a></li>
 +
        <li><a href="https://2017.igem.org/Team:BIT/Engagement"> Engagement</a></li>
 +
                                                                <li><a href="https://2017.igem.org/Team:BIT/Entrepreneurship">Entreperneurship</a></li>
 +
</ul>
 +
</li>
 +
<li class="has-dropdown">
 +
<a href="https://2017.igem.org/Team:BIT/Notebook">Notebook</a>
 +
<ul class="dropdown">
 +
<li><a href="https://2017.igem.org/Team:BIT/Gallery">Gallery</a></li>
 +
<li><a href="2017.igem.org/Team:BIT/Track">Track</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/nb">Journal</a></li>
 +
                                                                <li><a href="https://2017.igem.org/Team:BIT/Protocol">Protocol</a></li>
 +
</ul>
 +
</li>
 +
                                                        <li class="has-dropdown">
 +
<a href="https://2017.igem.org/Team:BIT/Team">Team</a>
 +
<ul class="dropdown">
 +
<li><a href="https://2017.igem.org/Team:BIT/Collaborations">Collaborations</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Team/Member">Member</a></li>
 +
<li><a href="https://2017.igem.org/Team:BIT/Attributions">Attributions</a></li>
 +
</ul>
 +
</li>
 +
<li class="btn-cta"><a href="https://2017.igem.org/Team:BIT"><span>Home</span></a></li>
 +
</ul>
 +
</div>
 +
</div>
 +
 +
</div>
 +
</div>
 +
</nav>
  
 +
<div id="fh5co-blog">
 +
<div class="container">
 +
<div class="row animate-box">
 +
<div class="col-md-8 col-md-offset-2 text-center fh5co-heading">
 +
<h2>Apply for Best Composite Part</h2>
 +
<p><h3>This year we design our whole part including strong promoter, Cyclic Amplifier and Dual Reporter fluorescence, We also building 19 new composite parts and we choose the best functional part to apply for this prize.<br>
 +
The BBa_K2305004 is strong constitutive promoter pcat and plux promoter with GFP, we increase the value of fluorescence above 10 times to the normal plux promoter with GFP. For the results of the characterizations please click<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2305004"> BBa_2305004</a>.</h3></p>
 +
</div>
 +
</div>
 +
  
<p>
 
A composite part is a functional unit of DNA consisting of two or more basic parts assembled together. <a href="http://parts.igem.org/wiki/index.php/Part:BBa_I13507">BBa_I13507</a> is an example of a composite part, consisting of an RBS, a protein coding region for a red fluorescent protein, and a terminator.
 
</p>
 
  
<p>New composite BioBrick devices can be made by combining existing BioBrick Parts (like Inverters, Amplifiers, Smell Generators, Protein Balloon Generators, Senders, Receivers, Actuators, and so on).</p>
 
  
<br>
 
<h3>Best Composite Part Special Prize</h3>
 
  
<p>New BioBrick devices can be made by combining existing BioBrick Parts. For example, Inverters, Amplifiers, Smell Generators, Protein Balloon Generators, Senders, Receivers, Actuators, and so on. To be eligible for this award, this part must adhere to <a href="http://parts.igem.org/DNA_Submission">Registry sample submission guidelines</a> and have been sent to the Registry of Standard Biological Parts. If you have a part you wish to nominate your team for this <a href="https://2017.igem.org/Judging/Awards">special prize</a>, make sure you add your part number to your <a href="https://2017.igem.org/Judging/Judging_Form">judging form</a> and delete the box at the top of this page.
 
  
<br><br>
+
<div id="fh5co-blog">
<b>Please note:</b> Judges will only look at the first part number you list, so please only enter ONE (1) part number in the judging form for this prize. </p>
+
<div class="container">
<br>
+
<div class="row animate-box">
<div class="highlight">
+
<div class="col-md-8 col-md-offset-2 text-center fh5co-heading">
<h4>Note</h4>
+
<h3>Modeling of Promoter Start Efficiency for Complex Part</h3>
<p>This page should list all the composite parts your team has made during your project. You must add all characterization information for your parts on the Registry. You should not put characterization information on this page. Remember judges will only look at the first part in the list for the Best Composite Part award, so put your best part first!</p>
+
<p><h3>The expression formula of promoter activity was constructed by Hill equation. β1 is the maximum starting ability of the promoter (generally set to 1), M1 is the amount of leakage of the promoter, SluxR is the amount of regulation factor, kd is the SluxR value when the model change trend is changed:</h3><br>
  
 +
 +
 +
Among them, according to the database in the official website of igem , we can know the value of some parameters: the maximum capacity of start-up promoterβ1 = 0.6; the amount of the leakage of promoter M1 = 0; n1 = 2.<br><center>
 +
<img src="https://static.igem.org/mediawiki/2017/3/35/Qidonzihuoxing.png" class="img-responsive img-rounded">   
 +
</center>
 +
So we put these known parameters into the equation and get the value of kd at equal distances: 50,100,150,200, finally draw a rough image:<br>
 +
<center>
 +
<img src="https://static.igem.org/mediawiki/2017/4/40/Qidongzihuoxing2.jpeg" class="img-responsive img-rounded">   
 +
</center><br></p>
 +
</div>
 +
</div>
 +
</div>
 
</div>
 
</div>
 +
 +
  
 
</div>
 
</div>
 +
</div>
 +
 +
 +
<div id="fh5co-started">
 +
    <div class="overlay"></div>
 +
    <div class="container">
 +
      <div class="row animate-box">
 +
        <div class="col-md-8 col-md-offset-2 text-center fh5co-heading">
 +
          <h2>Contact Us!</h2>
 +
          <p><center>Please keep reading if you want to contact us.</center></p>
 +
     
 +
        </div>
 +
      </div>
 +
    </div>
 +
  </div>
 +
  <footer id="fh5co-footer" role="contentinfo">
 +
    <div class="container">
 +
      <div class="row row-pb-md">
 +
        <div class="col-md-4 fh5co-widget">
 +
          <h4>BIT</h4>
 +
          <p>It's an excellent Team with thoughtful persons full of funs to the academic</p>
 +
        </div>
 +
        <div class="col-md-2 col-md-push-1 fh5co-widget">
 +
          <h4>Links</h4>
 +
          <ul class="fh5co-footer-links">
 +
            <li><a href="https://2017.igem.org/Team:BIT">Home</a></li>
 +
            <li><a href="https://2017.igem.org/Team:BIT/Team">Team</a></li>
 +
            <li><a href="https://2017.igem.org/Team:BIT/achievement">Achievement</a></li>
 +
            <li><a href="https://2017.igem.org/Team:BIT/Notebook">Notebook</a></li>
 +
          </ul>
 +
        </div>
 +
     
 +
        <div class="col-md-4 col-md-push-1 fh5co-widget">
 +
          <h4>Contact Information</h4>
 +
          <ul class="fh5co-footer-links">
 +
            <li><a href="">Beijing Institute of Technology No.5 Yard,Zhong Guan Cun South Street Haidian District, Beijing, CHINA</li>
 +
            <li><a href="">Wechat:iGEM_BIT</a></li>
 +
            <li><a href="">igem_bit@outlook.com</a></li>
 +
            <li><a href="">Facebook:iGEM_BIT</li>
 +
          </ul>
 +
        </div>
 +
      </div>
 +
      <div class="row copyright"> </div>
 +
    </div>
 +
  </footer>
 +
</div>
 +
<div class="gototop js-top"> <a href="#" class="js-gotop"><i class="icon-arrow-up22"></i></a> </div>
 +
<!-- JS FILES -->
 +
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js?action=raw&amp;ctype=text/jacascript"></script>
 +
<script src="https://2017.igem.org/Template:BIT/bootstrap/min/Javascript"></script>
 +
<script src="https://2017.igem.org/Template:BIT/jquery/flexslider-min/Javascript"></script>
 +
<script src="https://2017.igem.org/Template:BIT/jquery.easing/1/3/Javascript?action=raw&amp;ctype=text/javascript"></script>
 +
<!-- Bootstrap -->
 +
<script src="https://2017.igem.org/Template:BIT/bootstrap/Javascript?action=raw&amp;ctype=text/javascript"></script>
 +
<!-- Waypoints -->
 +
<script src="https://2017.igem.org/Template:BIT/jquery/waypoints/min/Javascript?action=raw&amp;ctype=text/javascript"></script>
 +
<!-- Flexslider -->
 +
<script src="https://2017.igem.org/Template:BIT/jquery/flexslider-min/Javascript?action=raw&amp;ctype=text/javascript"></script>
 +
<!-- Main -->
 +
<script src="https://2017.igem.org/Template:BIT/main/Javascript?action=raw&amp;ctype=text/javascript"></script>
 +
</body>
 +
 +
</p>
 +
<!--
 +
NewPP limit report
 +
CPU time usage: 0.002 seconds
 +
Real time usage: 0.003 seconds
 +
Preprocessor visited node count: 4/1000000
 +
Preprocessor generated node count: 24/1000000
 +
Post‐expand include size: 0/2097152 bytes
 +
Template argument size: 0/2097152 bytes
 +
Highest expansion depth: 2/40
 +
Expensive parser function count: 0/100
 +
-->
 +
 +
<!-- Saved in parser cache with key 2017_igem_org:pcache:idhash:42910-0!*!*!*!*!*!* and timestamp 20171101193646 and revision id 450056
 +
-->
 +
</div>             <div class="visualClear"></div>
 +
            </div>
 +
    </div>
 +
 +
        </div>
 +
 +
        <!-- Side Menubar -->
 +
        <div id="sideMenu">
 +
            <a href="https://2017.igem.org">
 +
                <div id="home_logo" >
 +
                <img src="https://static.igem.org/mediawiki/2017/b/bf/HQ_menu_logo.jpg">
 +
                </div>
 +
            </a>
 +
 +
            <div style="clear:both; height:5px;"></div>
 +
 +
            <div id="menuDisplay"></div>  <!- Menu will be loaded here ->
 +
        </div>
 +
 +
        <!-- Pop_Why Div is definded here -->
 +
        <div class="pop_why_cover"></div>
 +
 +
        <div class="pop_why_box" >
 +
            <div class="pop_close">× </div>
 +
            <div class="pop_why_content"><h3> Loading ... </h3></div>
 +
        </div>
  
 +
    </div>
 
</html>
 
</html>

Latest revision as of 02:27, 2 November 2017

Dsign - Minimal portfolio Bootstrap template

Apply for Best Composite Part

This year we design our whole part including strong promoter, Cyclic Amplifier and Dual Reporter fluorescence, We also building 19 new composite parts and we choose the best functional part to apply for this prize.
The BBa_K2305004 is strong constitutive promoter pcat and plux promoter with GFP, we increase the value of fluorescence above 10 times to the normal plux promoter with GFP. For the results of the characterizations please click BBa_2305004.

Modeling of Promoter Start Efficiency for Complex Part

The expression formula of promoter activity was constructed by Hill equation. β1 is the maximum starting ability of the promoter (generally set to 1), M1 is the amount of leakage of the promoter, SluxR is the amount of regulation factor, kd is the SluxR value when the model change trend is changed:


Among them, according to the database in the official website of igem , we can know the value of some parameters: the maximum capacity of start-up promoterβ1 = 0.6; the amount of the leakage of promoter M1 = 0; n1 = 2.
So we put these known parameters into the equation and get the value of kd at equal distances: 50,100,150,200, finally draw a rough image:

Contact Us!

Please keep reading if you want to contact us.