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<center> <h1>Overview of Project DR. SWITCH <br> (Disease-associated RNA Switch) </h1> </center> | <center> <h1>Overview of Project DR. SWITCH <br> (Disease-associated RNA Switch) </h1> </center> | ||
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− | <p style="font-family: roboto;font-size:115%;">Our project focuses on developing an on-site subtyping method for Influenza A viruses subtype H5N1 and H7N9 using toehold switches. To facilitate future toehold switch | + | <p style="font-family: roboto;font-size:115%;">Our project focuses on developing an on-site subtyping method for Influenza A viruses subtype H5N1 and H7N9 using toehold switches. To facilitate future toehold switch projects, we also developed <a href="https://2017.igem.org/Team:Hong_Kong-CUHK/Software"> an online software program </a> for designing toehold switches, and constructed a toehold switch cloning tool that allow easy construction and validation of toehold switches. |
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− | Influenza A is a | + | Influenza A is a rapidly changing disease that causes 5,000,000 of deaths annually worldwide. Among different subtypes, highly pathogenic avian influenza has the highest mortality rate. Challenges of disease control in the modern world with high population mobility remains at the speed and accuracy of diagnosis. However, nowadays influenza A subtyping method relies greatly on RT-PCR, which requires a long period of time, expertise and laboratory space. Meanwhile, a novel type of riboswitch, namely toehold switch, shows its potential in subtyping Influenza A with quicker detection and lower production cost. |
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− | By combining cell free system and toehold switch, a rapid on-site detection method for influenza A subtype H5N1 and H7N9 is designed and | + | By combining cell free system and toehold switch, a rapid on-site detection method for influenza A subtype H5N1 and H7N9 is designed and investigated. It has a high potential to be used widely in, but not limited to, animal farms, and border inspections and schools wherever expertise and laboratory equipments are not readily available. |
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<p style="font-family: roboto;font-size:115%;"> | <p style="font-family: roboto;font-size:115%;"> | ||
− | Influenza is a prevalent acute respiratory disease circulating among | + | Influenza is a prevalent acute respiratory disease circulating among humans and other animals (1). Influenza A can be spread rapidly throughout poultry flocks and cause severe illness, or even death in human. The most notorious pandemic was the “Spanish Flu” which occurred in in 1918, and have killed approximately 50 million people worldwide (1). Influenza A viruses pose large social and economic burden. Each year in the United States, it is estimated that around 600,000 lives and $90 billion US dollars are lost due to influenza A viruses (2). The existing form of influenza viruses genome is segmented antisense RNA. Influenza A can be subtyped according to the types of hemagglutinin (HA) and neuraminidase (NA) glycoprotein on the virus surface (above figure). NA protein can cleave terminal sialic acid residue and promote virion release (3). Since there are 18 types of HA and 11 types of NA, there are 198 possible subtypes. Different influenza A subtypes possess different properties. For example, the mortality rate of infection by the subtypes H5N1 and H7N9 is much higher than that of H1N1. |
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<p> <h2>H5N1: A notorious flu </h2></p> | <p> <h2>H5N1: A notorious flu </h2></p> | ||
<p style="font-family: roboto;font-size:115%;"> | <p style="font-family: roboto;font-size:115%;"> | ||
− | H5N1 is the most notorious and highly pathogenic avian influenza. The first epidemic outbreak of H5N1 in | + | H5N1 is the most notorious and highly pathogenic avian influenza. The first epidemic outbreak of H5N1 in humans happened in Hong Kong in 1997. The flu was then spread to the entire Asia. According to the World Health Organization, there were 859 confirmed human cases since 2003 which killed 453 people with a mortality rate of 52% (5). The disease not only create tremendous economic burden to the health care system, it also greatly impacted the poultry industry. During the outbreak of H5N1 in Hong Kong, 3.5 million chickens were slaughtered. About $10 billion US dollars was lost due to the H5N1 outbreak (6). Although the risk of H5N1 pandemic outbreak in human population is considered to be low recently, it is still considered as an endemic in poultry in six countries (Bangladesh, China, Egypt, India, Indonesia, and Vietnam) (7). </p> |
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<p> <h2>H7N9: The next H5N1? </h2></p> | <p> <h2>H7N9: The next H5N1? </h2></p> | ||
<p style="font-family: roboto;font-size:115%;"> | <p style="font-family: roboto;font-size:115%;"> | ||
− | H7 virus was thought to be only | + | H7 virus was thought to be only circulating among avian hosts but human infection was recently reported. The first case of human infection was recorded in China in 2013 (8). According to the World Health Organization (WHO), 1533 human infection cases were reported, with a mortality rate of 39% (9). In Hong Kong, 4 confirmed human cases have been reported so far. H7N9 caused economic loss of about $6.5 billion in China (10). Among all the avian influenza viruses, H7N9 virus was found to have the highest ability to infect humans and circulate in birds (11). WHO warned that the human infections are unusual and need to be carefully monitored. According to the Centers for Disease Control and Prevention (CDC) of the United States (12), H7N9 is the subtype that has the greatest potential to cause a pandemic in recent year compared with other subtypes. It is worried that H7N9 may cause the next pandemic since the virus is evolving for human-to-human transmission (13). </p> |
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<p><h2>The need for a new subtyping method </h2></p> | <p><h2>The need for a new subtyping method </h2></p> | ||
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<p style="font-family: roboto;font-size:115%;"> | <p style="font-family: roboto;font-size:115%;"> | ||
− | To avoid possible epidemic and pandemic outbreak, World Health Organization (WHO) has a well-established Global Influenza Surveillance and Response System (GISRS) (3). With combined effort of more than 120 national laboratories, the potential epidemic strain of influenza A virus will be selected to make vaccine to prevent possible outbreak (3). To effectively monitor the spread of avian influenza, a simple and rapid on-site method is needed for detecting the virus in both human and poultry. However, | + | To avoid possible epidemic and pandemic outbreak, World Health Organization (WHO) has a well-established Global Influenza Surveillance and Response System (GISRS) (3). With combined effort of more than 120 national laboratories, the potential epidemic strain of influenza A virus will be selected to make vaccine to prevent possible outbreak (3). To effectively monitor the spread of avian influenza, a simple and rapid on-site method is needed for detecting the virus in both human and poultry. However, on-site diagnostic methods, such as Rapid Influenza Diagnostic Tests (RIDTs), can only identify influenza A viruses but cannot subtype it (14). Traditional influenza A subtyping method rely on qRT-PCR (15). Although the technique is highly sensitive and specific (16), it is not suitable to be relied on during the spread of disease, since it requires a long period of time, and cannot perform in poor condition where expensive equipment and technical expertise are not available. Failure of immediate respond to the spread of disease may result in pandemic (17). Meanwhile, a novel type of riboswitch, namely toehold switch, shows its potential in detecting viral RNA on-site with short detection time and low production cost. |
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<p><h2>RNA toehold switches </h2></p> | <p><h2>RNA toehold switches </h2></p> | ||
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<center><img src="https://static.igem.org/mediawiki/2017/e/ef/CUHK_toehold3.jpg" width="50%" height="auto;"></center> | <center><img src="https://static.igem.org/mediawiki/2017/e/ef/CUHK_toehold3.jpg" width="50%" height="auto;"></center> | ||
<p style="font-family: roboto;font-size:115%;"> | <p style="font-family: roboto;font-size:115%;"> | ||
− | The artificial RNA biosensors that we use is called toehold switch, which is first developed and published in 2014 by Green <i>et al.</i> (18). It is a motif in mRNA that allows the translation of downstream protein coding sequence when a specific trigger RNA binds to it. The trigger RNA binds to the switch at the toehold domain and removes the secondary structures of the switch. Then the Ribosomal Binding Site (RBS) is released from the loop, which allows ribosome binding. Ribosomes can then read along the coding region of the toehold switch, and hence giving off a signal. (To know the exact structure of RNA toehold switch we used, please visit <a href="https://2017.igem.org/Team:Hong_Kong-CUHK/Model">our modelling page</a>) | + | The artificial RNA biosensors that we use is called a toehold switch, which is first developed and published in 2014 by Green <i>et al.</i> (18). It is a motif in mRNA that allows the translation of downstream protein coding sequence when a specific trigger RNA binds to it. The trigger RNA binds to the switch at the toehold domain and removes the secondary structures of the switch. Then the Ribosomal Binding Site (RBS) is released from the loop, which allows ribosome binding. Ribosomes can then read along the coding region of the toehold switch, and hence giving off a signal. (To know the exact structure of RNA toehold switch we used, please visit <a href="https://2017.igem.org/Team:Hong_Kong-CUHK/Model">our modelling page</a>) |
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− | Altogether, the project aims to apply toehold switch technology in influenza A subtyping and offer convenient tool to facilitate the design of toehold | + | Altogether, the project aims to apply toehold switch technology in influenza A subtyping and offer a more convenient tool to facilitate the design of toehold switches. We hope that our method could suppress the spread of pathogenic Influenza in a timely manner. </p> |
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Latest revision as of 20:28, 1 November 2017