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<li> <a href="#max" class="pageNavSm">Maximize NP-Biofilm Contact Area</a> </li> | <li> <a href="#max" class="pageNavSm">Maximize NP-Biofilm Contact Area</a> </li> | ||
<li> <a href="#infra" class="pageNavSm">Maximize Adaptability to Existing Infrastructure</a> </li> | <li> <a href="#infra" class="pageNavSm">Maximize Adaptability to Existing Infrastructure</a> </li> | ||
− | <li> <a href="#WWTPModel" class="pageNavSm">Biofilm Prototype in a WWTP Model</a> </li> | + | <li> <a href="#WWTPModel" class="pageNavSm">Applying Biofilm Prototype in a WWTP Model</a> </li> |
<li> <a href="#ref" class="pageNavBig">REFERENCES</a> </li> | <li> <a href="#ref" class="pageNavBig">REFERENCES</a> </li> | ||
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− | <h4 class="para col-lg-12"> To achieve our goal of applying biofilms in WWTPs, we need to inform WWTP managers on the amount of biofilm necessary to trap their desired amount of NPs. Thus, we devised two experiments to investigate the effect of 1) biofilm volume and 2) biofilm surface area on NP trapping; the results of these experiments were incorporated into our model. (Learn more about modeling <a href= | + | <h4 class="para col-lg-12"> To achieve our goal of applying biofilms in WWTPs, we would need to inform WWTP managers on the amount of biofilm necessary to trap their desired amount of NPs. Thus, we devised two experiments to investigate the effect of 1) biofilm volume and 2) biofilm surface area on NP trapping; the results of these experiments were incorporated into our model. (Learn more about modeling <a href=”https://2017.igem.org/Team:TAS_Taipei/Model”>here</a>!) |
+ | </h4> | ||
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− | <h4 class="para col-lg-7"> To test the effects of biofilm volume, <i>E. coli</i> biofilms were grown, extracted, and washed as described in the <a href= | + | <h4 class="para col-lg-7"> To test the effects of biofilm volume, <i>E. coli</i> biofilms were grown, extracted, and washed as described in the <a href=”https://goo.gl/Q69wZS”>Experimental</a> page. These tests were performed with AuNP. Because AuNP solution is purple in color, we could take absorbance measurements and convert these values to AuNP concentration using a standard curve (figure 5-5A). 10 mL of Gold NP (AuNP) solution was added to different volumes of biofilm (figure 5-5B). The containers were shaken at 100 rpm overnight to maximize interaction between the biofilm and AuNPs. Finally, the mixtures were transferred to conical tubes and centrifuged to isolate the supernatant, which contains free AuNPs quantifiable using a spectrophotometer set at 527 nm. <br><br> |
− | Adding more than 1 mL of biofilm to the same amount of AuNP solution did not trap more AuNPs (figure 5- | + | Adding more than 1 mL of biofilm to the same amount of AuNP solution did not trap more AuNPs (figure 5-5C). We observed that 1 mL of biofilm was just enough to fully cover the bottom of the container. Since only the top of the biofilm directly contacted the AuNP solution, increasing biofilm volume beyond 1 mL simply increased the depth and not the contact area between biofilm and AuNPs. <b>We concluded that biofilm volume is not a main factor determining NP removal. </b> |
</h4> | </h4> | ||
<div class="image_container col-lg-5"> | <div class="image_container col-lg-5"> | ||
<img src="https://static.igem.org/mediawiki/2017/8/89/T--TAS_Taipei--Volume_trial-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/8/89/T--TAS_Taipei--Volume_trial-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 5- | + | <h4 class="subtitle"><b>Figure 5-5 Biofilm volume does not affect NP trapping. </b> A) AuNP standard curve relates absorbance and molar concentration. B) Different amounts of biofilm were added to same amount of AuNP solution. C) Increasing biofilm volume beyond 1 mL does not increase NP removal. <span class="subCred">Experiment: Yvonne W.</span></h4> |
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− | <h4 class="para col-lg-12"> Next, we tested the effects of surface area on NP removal. Similar to the previous experiment, biofilms were extracted and washed. Two experimental groups were set up in different sized cylinders, with either a small (~1.5 cm | + | <h4 class="para col-lg-12"> Next, we tested the effects of surface area on NP removal. Similar to the previous experiment, biofilms were extracted and washed. Two experimental groups were set up in different sized cylinders, with either a small (~1.5 cm<sup>2</sup>) or big (~9 cm<sup>2</sup>) base area (figure 5-6A). The bottom 0.5 cm of each container was covered by biofilm, then 10 mL of AuNP solution was added. In this case, the depth of biofilm is consistent, and the contact area between AuNPs and biofilm is equal to the area of the container’s base. All containers were shaken at 100 rpm at room temperature. Every hour (for a total of five hours), one replicate from each group was centrifuged and the absorbance of free AuNPs in the supernatant was measured at 527 nm. |
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<div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/5/50/T--TAS_Taipei--SA_new.jpg" alt="test" id="group"> | <div class="image_container col-lg-10 col-lg-offset-1"> <img src="https://static.igem.org/mediawiki/2017/5/50/T--TAS_Taipei--SA_new.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 5- | + | <h4 class="subtitle"><b>Figure 5-6 Increasing NP-biofilm contact area increases NP removal. </b> A) Different sized cylinders were used to change NP-biofilm contact area. B) AuNPs were trapped much faster in the large container with a greater biofilm surface area. <span class="subCred">Experiment: Justin P., Florence L., Yvonne W.</span></h4> |
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− | <h4 class="para col-lg-12"> We observed that <b>AuNPs were trapped much faster in the large container with a greater biofilm surface area</b> (figure 5- | + | <h4 class="para col-lg-12"> We observed that <b>AuNPs were trapped much faster in the large container with a greater biofilm surface area</b> (figure 5-6B). Using data from this experiment, our modeling team computed the concentration of NPs trapped per unit surface area, a constant which was integrated into their model. (Learn more about it <a href=”https://2017.igem.org/Team:TAS_Taipei/Model”>here!</a>)</h4> |
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− | <h4 class="para col-lg-12"> Some aquariums already utilize biofilms grown on plastic structures called <i>biocarriers</i> for water purification. Commercial biocarriers use various ridges, blades, and hollow structures to maximize surface area available for biofilm attachment (figure 5- | + | <h4 class="para col-lg-12"> Some aquariums already utilize biofilms grown on plastic structures called <i>biocarriers</i> for water purification. Commercial biocarriers use various ridges, blades, and hollow structures to maximize surface area available for biofilm attachment (figure 5-7A). With that in mind, we <b> designed and 3D-printed plastic (polylactic acid, or PLA) prototypes with many radiating blades to maximize the area available for biofilm attachment</b> (figure 5-7B). We used PLA because it was readily available for printing and easy to work with, allowing us to quickly transition from constructing to testing our prototype. |
</h4> | </h4> | ||
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<div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/d/db/T--TAS_Taipei--biocarriers.jpg" alt="test" id="group"> | <div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/d/db/T--TAS_Taipei--biocarriers.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 5- | + | <h4 class="subtitle"><b>Figure 5-7 Biocarriers enable biofilm attachment. </b> A) An example of commercial biocarriers. B) We 3D-printed our prototype to maximize surface area for biofilm attachment. C) We observed biofilms loosely attached onto our prototype. <span class="subCred">Prototype: Candice L., Yvonne W. Experiment: Yvonne W.</span></h4> |
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− | <h4 class="para col-lg-12"> To test how well biofilms actually adhere and develop on our prototypes, we used BBa_K2229300 liquid cultures, since they produced the most biofilm in previous tests. After an incubation period, we observed biofilm growth and attachment to our prototypes (figure 5- | + | <h4 class="para col-lg-12"> To test how well biofilms actually adhere and develop on our prototypes, we used BBa_K2229300 liquid cultures, since they produced the most biofilm in previous tests. After an incubation period, we observed biofilm growth and attachment to our prototypes (figure 5-7C). However, when we lifted the prototype, most of the biofilm fell off, showing that it was only weakly attached to our prototype. We next tested different types of plastic, including polystyrene, but found that <b>our biofilms adhered much better to glass surfaces (i.e. glass coverslips) compared to plastic</b> (figure 5-8). To improve adhesion in the future, we would try to use glass as the material, or change our chassis from <i>E. coli</i> K-12 to another bacterial strain that shows better attachment to plastic surfaces. |
</h4> | </h4> | ||
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<div class="row"> | <div class="row"> | ||
<div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/0/0e/T--TAS_Taipei--CRA_glassVpolystyrene.jpg" alt="test" id="group"> | <div class="image_container col-lg-8 col-lg-offset-2"> <img src="https://static.igem.org/mediawiki/2017/0/0e/T--TAS_Taipei--CRA_glassVpolystyrene.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 5- | + | <h4 class="subtitle"><b>Figure 5-8 Biofilm adheres better to glass than to plastic (polystyrene). </b> A) More biofilms were observed adhering onto glass than polystyrene surfaces. B) Stained biofilm is solubilized in ethanol. C) Absorbance is measured at 500 nm. <span class="subCred">Experiment: Yvonne W.</span></h4> |
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<h4 class="para col-lg-12"> Lorem ipsum dolor sit amet, consectetur adipisicing elit. Ullam modi excepturi vel iure error deleniti unde, suscipit necessitatibus mollitia eveniet aliquid odit incidunt voluptatum praesentium maxime non et explicabo soluta repellat laborum? Perspiciatis cumque harum ratione similique voluptatibus odio voluptatum, debitis possimus, illum aut quidem dicta corrupti quos minima aperiam. | <h4 class="para col-lg-12"> Lorem ipsum dolor sit amet, consectetur adipisicing elit. Ullam modi excepturi vel iure error deleniti unde, suscipit necessitatibus mollitia eveniet aliquid odit incidunt voluptatum praesentium maxime non et explicabo soluta repellat laborum? Perspiciatis cumque harum ratione similique voluptatibus odio voluptatum, debitis possimus, illum aut quidem dicta corrupti quos minima aperiam. | ||
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+ | <video controls="" class="col-lg-10 col-lg-offset-1"> | ||
+ | <source src="https://static.igem.org/mediawiki/2017/9/97/T--TAS_Taipei--Dihua_WWTP_%281%29.mp4" type="video/mp4"> Your browser does not support the video tag. | ||
+ | </video> | ||
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+ | <h4 class="para col-lg-12"> *Details on any experimental setup can be found in the Prototype and Modeling sections of our <a href="https://2017.igem.org/Team:TAS_Taipei/Notebook">lab notebook.</a> | ||
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