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Together with the installation of NFsim, you installed also some example models, which can be found in the folder "models". The simple_system.bngl file is very nice as a start to see how output can be generated. We recommend that you open the bngl files with Notepad ++, as this is a very easy way to not only look at the files, but also to edit them if desired. | Together with the installation of NFsim, you installed also some example models, which can be found in the folder "models". The simple_system.bngl file is very nice as a start to see how output can be generated. We recommend that you open the bngl files with Notepad ++, as this is a very easy way to not only look at the files, but also to edit them if desired. | ||
− | Next to the simple_system.bngl file, we wrote a general file of our own with nice descriptions of each step and called this file: "system_example.bngl". The description about how a bngl file is build up, can be found on our wiki page in the rule-based-model section and can be found <a href="https://2017.igem.org/Team:TU-Eindhoven/Model/Rule_based_model" target="_blank">here</a> | + | Next to the simple_system.bngl file, we wrote a general file of our own with nice descriptions of each step and called this file: "system_example.bngl". The description about how a bngl file is build up, can be found on our wiki page in the rule-based-model section and can be found <a href="https://2017.igem.org/Team:TU-Eindhoven/Model/Rule_based_model" target="_blank">here.</a> |
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− | After you wrote your own bngl file, it is time to execute the file and get some results. The easiest way is to have a bngl file which has a line that states: | + | After you wrote your own bngl file, it is time to execute the file and get some results. The easiest way is to have a bngl file which has a line that states: "writeXML();" so that an XML file will be created during the first time we run the model and we can use the xml-file to run the same model again, but with different time steps. |
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Revision as of 21:20, 29 October 2017