Difference between revisions of "Team:ETH Zurich/Model"

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         <h1>TOC</h1>
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             <h1>Model</h1>
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             <h1>Modeling</h1>
 
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             <h5> Modeling</h5>
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            <p>Mathematical models and computer simulations provide a great way to describe the function and operation of BioBrick Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior in conjunction with experiments in the wetlab.</p>
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                <p>When building a bacterial system meant to function in a more complex setting than in bulk in a test tube, modeling what would its behavior be in real conditions is key to aim for a credible development. Because the experimental conditions that were available to us to develop our system (in vitro experiments) were quite far from the actual situation (in vivo tumor colonization), a significant amount of work on the modeling was needed.</p>
  
            <h3> Gold Medal Criterion #3</h3>
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<p>
            <p>To complete for the gold medal criterion #3, please describe your work on this page and fill out the description on your <a href="https://2017.igem.org/Judging/Judging_Form">judging form</a>. To achieve this medal criterion, you must convince the judges that your team has gained insight into your project from modeling. You may not convince the judges if your model does not have an effect on your project design or implementation.</p>
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With our model, we could make the link between what was happening during our in vitro experiments and what would correspondingly happen in the real case scenario in the tumor.  
            <p>Please see the <a href="https://2017.igem.org/Judging/Medals"> 2017 Medals Page</a> for more information.</p>
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            <h3>Best Model Special Prize</h3>
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As a result, we have been able to give the wet lab initial and follow-up design guidelines to get our bacteria better at [targeting tumor specifically, link to SENSING page], and have the [release of Azurin done in a reasonable time using focused ultrasounds, link to THERMAL LYSIS module page].
            <p>To compete for the <a href="https://2017.igem.org/Judging/Awards">Best Model prize</a>, please describe your work on this page and also fill out the description on the <a href="https://2017.igem.org/Judging/Judging_Form">judging form</a>. Please note you can compete for both the gold medal criterion #3 and the best model prize with this page.</p>
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            <h5> Inspiration </h5>
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            <p>Here are a few examples from previous teams:</p>
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            <ul>
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                <li><a href="https://2016.igem.org/Team:Manchester/Model">Manchester 2016</a></li>
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                <li><a href="https://2016.igem.org/Team:TU_Delft/Model">TU Delft 2016</a> </li>
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                <li><a href="https://2014.igem.org/Team:ETH_Zurich/modeling/overview">ETH Zurich 2014</a></li>
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                <li><a href="https://2014.igem.org/Team:Waterloo/Math_Book">Waterloo 2014</a></li>
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            </ul>
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Revision as of 09:26, 29 September 2017

TOC

Modeling

When building a bacterial system meant to function in a more complex setting than in bulk in a test tube, modeling what would its behavior be in real conditions is key to aim for a credible development. Because the experimental conditions that were available to us to develop our system (in vitro experiments) were quite far from the actual situation (in vivo tumor colonization), a significant amount of work on the modeling was needed.

With our model, we could make the link between what was happening during our in vitro experiments and what would correspondingly happen in the real case scenario in the tumor.

As a result, we have been able to give the wet lab initial and follow-up design guidelines to get our bacteria better at [targeting tumor specifically, link to SENSING page], and have the [release of Azurin done in a reasonable time using focused ultrasounds, link to THERMAL LYSIS module page].