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JustInTime (Talk | contribs) m |
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<div class="image_container col-lg-3"> | <div class="image_container col-lg-3"> | ||
<img src="https://static.igem.org/mediawiki/2017/8/88/T--TAS_Taipei--figure_2-1-new.png" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/8/88/T--TAS_Taipei--figure_2-1-new.png" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b> Figure 2-1 | + | <h4 class="subtitle"><b> Figure 2-1 PR-citrate interaction (Syed 2011). </b> Two lysine residues (blue) on the surface of PR can bind citrate (red).</h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/9/9d/T--TAS_Taipei--figure_2-2.png" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/9/9d/T--TAS_Taipei--figure_2-2.png" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 2-2 | + | <h4 class="subtitle"><b>Figure 2-2 Proteorhodopsin expression.</b> Our construct includes a strong promoter, strong RBS, <i>pR</i> and double terminator.<span class="subCred"> Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
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<div class="image_container col-lg-5"> | <div class="image_container col-lg-5"> | ||
<img src="https://static.igem.org/mediawiki/2017/3/34/T--TAS_Taipei--figure_3-1.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/3/34/T--TAS_Taipei--figure_3-1.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-1 | + | <h4 class="subtitle"><b>Figure 3-1 We envision using <i>E. coli</i> biofilms (green) to trap nanoparticles of different sizes and composition (pink). </b></h4> |
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<div class="image_container col-lg-6 col-lg-offset-3"> | <div class="image_container col-lg-6 col-lg-offset-3"> | ||
<img src="https://static.igem.org/mediawiki/2017/9/9b/T--TAS_Taipei--figure_3-2.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/9/9b/T--TAS_Taipei--figure_3-2.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-2 | + | <h4 class="subtitle"><b>Figure 3-2 Growing <i>E. coli</i> biofilms. </b> A,B) Liquid cultures were plated with glass coverslips and incubated for up to 2 weeks. C) Biofilm can be washed and used. <span class="subCred"> Experiment: Yvonne W.</span></h4> |
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<div class="image_container col-lg-12"> | <div class="image_container col-lg-12"> | ||
<img src="https://static.igem.org/mediawiki/2017/e/e0/T--TAS_Taipei--figure_3-3-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/e/e0/T--TAS_Taipei--figure_3-3-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-3 | + | <h4 class="subtitle"><b>Figure 3-3 Comparing different SEM sample preparation protocols. </b> <i>E. coli</i> samples were prepared for SEM. A) Critical Point Drying seems to change cell morphology, whereas B,C) fixation with GA preserved both cell shape and biofilm structure. <span class="subCred"> SEM Imaging & Figure: Justin Y.</span> |
</h4> | </h4> | ||
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<div class="image_container col-lg-10 col-lg-offset-1"> | <div class="image_container col-lg-10 col-lg-offset-1"> | ||
<img src="https://static.igem.org/mediawiki/2017/e/eb/T--TAS_Taipei--figure_3-4-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/e/eb/T--TAS_Taipei--figure_3-4-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-4 | + | <h4 class="subtitle"><b>Figure 3-4 Image stacking decreases noise.</b> Here, 26 images of the same field of view were taken and stacked using Adobe Photoshop.<span class="subCred"> SEM Imaging & Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6 col-lg-offset-3"> | <div class="image_container col-lg-6 col-lg-offset-3"> | ||
<img src="https://static.igem.org/mediawiki/2017/e/e5/T--TAS_Taipei--3-6-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/e/e5/T--TAS_Taipei--3-6-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-6 | + | <h4 class="subtitle"><b>Figure 3-6 SEM Image showing AuNPs trapped by biofilm.</b> A biofilm+AuNP sample was fixed with GA. Some EPS is preserved (red) and AuNPs (white) seemed to aggregate and adhere onto the EPS.<span class="subCred"> SEM Imaging: Justin Y.</span></h4> |
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<div class="image_container col-lg-8 col-lg-offset-2"> | <div class="image_container col-lg-8 col-lg-offset-2"> | ||
<img src="https://static.igem.org/mediawiki/2017/c/ce/T--TAS_Taipei--figure_3-7.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/c/ce/T--TAS_Taipei--figure_3-7.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-7 | + | <h4 class="subtitle"><b>Figure 3-7 Two curli operons—<i>csgBA</i> and <i>csgDEFG</i>—direct biofilm synthesis.</b><span class="subCred"> Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/3/33/T--TAS_Taipei--figure_3-8.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/3/33/T--TAS_Taipei--figure_3-8.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b> Figure 3-8 | + | <h4 class="subtitle"><b> Figure 3-8 CsgD expression. </b> Our construct includes a strong promoter, strong RBS, csgD and double terminator.<span class="subCred"> Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/a/a1/T--TAS_Taipei--figure_3-10.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/a/a1/T--TAS_Taipei--figure_3-10.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-10 | + | <h4 class="subtitle"><b>Figure 3-10 PCR Check for BBa_K880005 +CsgD and OmpR234 +BBa_B0015. </b> The expected size of BBa_K880005 +CsgD is 1000 bp (orange box) and OmpR234 +BBa_B0015 is 1100 bp (blue box).<span class="subCred"> Cloning: Catherine Y., Dylan L., Justin Y.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/a/a2/T--TAS_Taipei--figure_3-11.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/a/a2/T--TAS_Taipei--figure_3-11.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b> Figure 3-11 | + | <h4 class="subtitle"><b> Figure 3-11 PCR Check for BBa_K2229100 & BBa_K2229200. </b> The expected size of BBa_K2229100 (CsgD full construct) is 1100 bp (orange box), and BBa_K2229200 (OmpR234 full construct) is 1200 bp (blue box).<span class="subCred"> Cloning: Catherine Y., Dylan L., Justin Y.</span></h4> |
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<div class="image_container col-lg-6 col-lg-offset-3"> | <div class="image_container col-lg-6 col-lg-offset-3"> | ||
<img src="https://static.igem.org/mediawiki/2017/2/27/T--TAS_Taipei--figure_3-12.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/2/27/T--TAS_Taipei--figure_3-12.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-12 | + | <h4 class="subtitle"><b>Figure 3-12 CsgD and OmpR234 Expression </b> Our construct includes a strong promoter, two strong RBS, <i>csgD</i>, <i>ompR234</i> and double terminator.<span class="subCred"> Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6 col-lg-offset-3"> | <div class="image_container col-lg-6 col-lg-offset-3"> | ||
<img src="https://static.igem.org/mediawiki/2017/c/c2/T--TAS_Taipei--figure_3-13.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/c/c2/T--TAS_Taipei--figure_3-13.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-13 | + | <h4 class="subtitle"><b>Figure 3-13 PCR Check for BBa_K2229300. </b> The expected size of BBa_K2229300 is 1900 bp (green box)<span class="subCred"> Cloning: Catherine Y., Dylan L., Justin Y.</span></h4> |
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<div class="image_container col-lg-12"> | <div class="image_container col-lg-12"> | ||
<img src="https://static.igem.org/mediawiki/2017/e/e6/T--TAS_Taipei--figure_3-14-fix-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/e/e6/T--TAS_Taipei--figure_3-14-fix-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-14 | + | <h4 class="subtitle"><b>Figure 3-14 Overexpression of CsgD and/or OmpR234 upregulates the curli operon to different degrees </b> We hypothesize that biofilm production would be upregulated (in increasing order) if we overexpress A) CsgD, B) OmpR234, or C) both.<span class="subCred"> Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-10 col-lg-offset-1"> | <div class="image_container col-lg-10 col-lg-offset-1"> | ||
<img src="https://static.igem.org/mediawiki/2017/1/14/T--TAS_Taipei--figure_3-15.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/1/14/T--TAS_Taipei--figure_3-15.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b>Figure 3-15 | + | <h4 class="subtitle"><b>Figure 3-15 SDS-PAGE results show that BBa_K2229100, BBa_2229200, and BBa_K2229300 overexpress CsgD, OmpR234, or both proteins, respectively.</b> Predicted proteins from the curli operons are listed on the right, and <i>E. coli</i> expressing GFP was used as a positive control.</b><span class="subCred"> Protein Gel: & Figure: Justin Y.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/7/71/T--TAS_Taipei--3-16_new-min.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/7/71/T--TAS_Taipei--3-16_new-min.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b> Figure 3-16 | + | <h4 class="subtitle"><b> Figure 3-16 Overexpression of CsgD (BBa_K2229100) doubles biofilm production. </b> A) Congo red assay stains biofilm (red). B) Stained biofilm is solubilized in ethanol. C) Absorbance is measured at 500 nm.<span class="subCred"> Experiment & Figure: Yvonne W.</span></h4> |
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<div class="image_container col-lg-6"> | <div class="image_container col-lg-6"> | ||
<img src="https://static.igem.org/mediawiki/2017/a/a2/T--TAS_Taipei--figure_3-17.jpg" alt="test" id="group"> | <img src="https://static.igem.org/mediawiki/2017/a/a2/T--TAS_Taipei--figure_3-17.jpg" alt="test" id="group"> | ||
− | <h4 class="subtitle"><b> Figure 3-17 | + | <h4 class="subtitle"><b> Figure 3-17 Overexpression of OmpR234 (BBa_K2229200) leads to ~8 times more biofilm production than control. </b> A) Congo red assay stains biofilm (red). B) Stained biofilm is solubilized in ethanol. C) Absorbance is measured at 500 nm.<span class="subCred"> Experiment & Figure: Yvonne W.</span></h4> |
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