Difference between revisions of "Team:SDSZ-China"

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<h1> Project Description </h1>
 
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Bear bile, one of the most famous animal drugs in Traditional Chinese Medicine (TCM), has been recorded in ancient Chinese medicine book as a significant method to treat hepatic and biliary disorders. Aside from bear bile's efficacy in TCM, its marked pharmaceutical effects on fever fighting, detoxification and pain reduction have been confirmed through modern investigations. However, the increasing demand for bear bile has caused bears to be in an endangered state: bear poaching and illegal animal trade have greatly dwindled the number of the wild Asiatic black bear. Apart from that, bear bile farming industry in Asia extracts bile through “milking” from the bears, which is operated through surgically implanting a permanent catheter in the animal's gallbladder to obtain the drips. It is unquestionable that the bear bile farming process will lead to both physical and psychological damage in bears.
 
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To find substitute or alternative for bear bile farming, our team will be working on the biological synthesis of the main effective component of this important medicine, UDCA(Ursodeoxycholic Acid). This biological approach will not only be more efficient but also be cheaper than the original chemical approach, which is widely used in the current UDCA synthesis industry.
 
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We found that it is possible to convert the main component of goose bile, CDCA(Chenodeoxycholic Acid), into UDCA, by employing two enzymes to catalyze the reaction. The reaction will proceed in two steps. First, CDCA is oxidized in the presence of 7α-HSDH(7alpha-hydroxysteroid dehydrogenase), coupled by the regeneration of NAD+ with the enzyme LDH(Lactate dehydrogenase), and pyruvate. Similarly, in the second reduction step, the enzyme 7β-HSDH(7beta-hydroxysteroid dehydrogenase) catalyzes the reaction of 7-oxo-LCA to UDCA with GDH(glucose dehydrogenase) and glucose for the regeneration of cofactor (NADPH). 
 
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<p>
 
Our mission is to express the four enzymes(7α-HSDH, 7β-HSDH, GDH, and LDH) in the <i>E.coli</i> and test their activities. After expression, all the enzymes will be able to bind to a chitin column because a fragment encoding a chitin binding domain is fused with the target genes. This specific design excels in two specific ways: first, by controlling the presence of the chitin column in the solution, we can control the process of the reaction. Second, this design simplified the effect of the specific target protein in the extraction of purified bacteria. At last, a machine including the reaction efficiency measuring system and the enzyme addition controlling system will be made.
 
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<h5><a href="https://2016.igem.org/Team:TAS_Taipei/Background">Background</a></h5>
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<h5><a href="https://2016.igem.org/Team:TAS_Taipei/Achievements">Achievements</a></h5>
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<h4><b>Cataracts</b> - the leading cause of blindness. Find out how we can non-invasively <b>treat</b> and <b>prevent</b> cataract formation.</b></h4>
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<h5><a href="https://2016.igem.org/Team:TAS_Taipei/Experimental_Summary#construct">Prevention and Treatment Constructs </a></h5>
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<h5><a href="https://2016.igem.org/Team:TAS_Taipei/Experimental_Summary#prototype">Delivery Prototype</a></h5>
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                        <h4>We build <b>constructs</b> to make our great ideas become reality. Follow along our discovery of exciting science!</h4>
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<h5><a href="https://2016.igem.org/Team:TAS_Taipei/Model#treatment">CH25H Treatment</a></h5>
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<h4><b>Computational Biology</b> provides us models that we cannot easily test experimentally. Click to find out the results of our modeling, and the math behind it!</h4>
<p>While you may not win Best Wiki with this styling, your team is still eligible for all other awards. This default wiki meets the requirements, it improves navigability and ease of use for visitors, and you should not feel it is necessary to style beyond what has been provided.</p>  
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<h4>We don't just grow cool bacteria. We make a <b>difference</b>. Find out how we tackled <b>social aspects</b> of this project.</h4>
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<h4><b>Safety first.</b> Especially in a lab. Here's how we maintained and investigated the integrity and security of our work environment.</h4>
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<h4>Every iGEM project is the accumulation of an entire year's hard work by a group of cheerful students. <b>Meet the team!</b></h4>
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<h2 style="font-family:'Lato';letter-spacing:10px;color: white; font-size: 60px;  margin-top: 0;  margin-bottom: 0;"><b>
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C&#9678;UNTERACTS</b></h2>
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<a href="https://igem.org/HS"><img src="https://static.igem.org/mediawiki/2016/6/6e/T--TAS_Taipei--TAS_Icon_Logo2.png" alt="" style="width: 100px;"></a>
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                        <li><a href="#cataract">What are Cataracts?</a></li>
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<li><a href="#solution">What is our Solution?</a></li>
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<h5> Wiki template information </h5>
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<p>We have created these wiki template pages to help you get started and to help you think about how your team will be evaluated. You can find a list of all the pages tied to awards here at the <a href="https://2017.igem.org/Judging/Pages_for_Awards">Pages for awards</a> link. You must edit these pages to be evaluated for medals and awards, but ultimately the design, layout, style and all other elements of your team wiki is up to you!</p>
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<h1 id='overview'>Background</h1>
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                        <p>Cataracts are the leading cause of blindness today, affecting 20 million people worldwide (World Health Organization). Half of Americans above 80 years old are affected by cataracts (National Eye Institute), and so are many animals! The National Eye Institute projects that in 30 years, the number of cataract patients will increase to 50 million (National Eye Institute).  </p>                           
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<h5> Editing your wiki </h5>
 
<p>On this page you can document your project, introduce your team members, document your progress and share your iGEM experience with the rest of the world! </p>
 
<p> <a href="https://2017.igem.org/wiki/index.php?title=Team:Example&action=edit"> </a>Use WikiTools - Edit in the black menu bar to edit this page</p>
 
  
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        <h2 id = 'cataract'>What are Cataracts?</h2>
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                                    The lens is mostly made of proteins called crystallins. Crystallin proteins are normally soluble, which keeps the lens clear and allows light entering the eye to focus. When these proteins are damaged, they form insoluble clumps (Truscott, 2005). This causes the clouding seen in cataractous lenses, which scatters light and in turn makes vision blurry (Figure 1.1).
  
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                                <figure class = "col-sm-6">
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        <img src="https://static.igem.org/mediawiki/2016/f/ff/T--TAS_Taipei--Normal_vs_Cataract_Model_cropped.png">
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                                    <figcaption class='darkblue'><b>Figure 1.1. </b>Cataracts scatter light coming through the lens, which blurs vision.
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                                    Cataracts can be caused by many factors, including radiation and diabetes, but the underlying cause is oxidative damage. Oxidative damage happens when unstable chemicals containing oxygen react with DNA, lipids, or proteins, disrupting cellular functions (Truscott, 2005). In the lens, crystallin proteins can be oxidized by hydrogen peroxide (H₂O₂), which is a reactive molecule produced during aerobic respiration (Giorgio et al., 2007). H₂O₂ reacts with protein residues and changes the shape of the protein. When two cysteine residues on separate proteins are oxidized by H₂O₂, for example, they can form a disulfide bond, which links these proteins together. The damaged proteins thus aggregate and form clumps in the lens (Truscott, 2005) (Figure 1.2).
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                                    <figcaption class='darkblue'><b>Figure 1.2. </b>Oxidative damage by H₂O₂ can lead to proteins misfolding, breaking apart, and clumping.</figcaption>
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                                    <b>In the eye, a natural antioxidant called glutathione (GSH) exists,</b> which can convert H₂O₂ into water (Giblin, 2000). With age, however, GSH levels decrease, and oxidative damage caused by H₂O₂ increases. When there is more H₂O₂ in the lens than GSH can remove, crystallins become damaged (Figure 1.3). When GSH levels are low, H₂O₂ starts to oxidize crystallins and cause cataracts. As lens cells age, they move towards the nucleus and their GSH levels fall (Cvekl & Ashery-Padan, 2014), which may explain why the older cells in the lens nucleus are more prone to developing cataracts
  
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<h5>Inspiration</h5>
 
<p> You can also view other team wikis for inspiration! Here are some examples:</p>
 
<ul>
 
<li> <a href="https://2014.igem.org/Team:SDU-Denmark/"> 2014 SDU Denmark </a> </li>
 
<li> <a href="https://2014.igem.org/Team:Aalto-Helsinki">2014 Aalto-Helsinki</a> </li>
 
<li> <a href="https://2014.igem.org/Team:LMU-Munich">2014 LMU-Munich</a> </li>
 
<li> <a href="https://2014.igem.org/Team:Michigan"> 2014 Michigan</a></li>
 
<li> <a href="https://2014.igem.org/Team:ITESM-Guadalajara">2014 ITESM-Guadalajara </a></li>
 
<li> <a href="https://2014.igem.org/Team:SCU-China"> 2014 SCU-China </a></li>
 
</ul>
 
</div>
 
  
<div class="column half_size" >
+
                                </p>
<h5> Uploading pictures and files </h5>
+
                                </div>
<p> You can upload your pictures and files to the iGEM 2017 server. Remember to keep all your pictures and files within your team's namespace or at least include your team's name in the file name. <br />
+
                            </div>
When you upload, set the "Destination Filename" to <br><code>T--YourOfficialTeamName--NameOfFile.jpg</code>. (If you don't do this, someone else might upload a different file with the same "Destination Filename", and your file would be erased!)<br><br>
+
                          <br><br>
 +
                            <div class="row">
 +
                                <figure class = "col-sm-7">
 +
        <img src="https://static.igem.org/mediawiki/2016/5/5d/T--TAS_Taipei--Antioxidant_Balance.jpeg">
 +
                                    <figcaption class='darkblue'><b>Figure 1.3.</b> Antioxidants protects proteins from oxidative damage by H₂O₂ (left). When antioxidant levels are low, H₂O₂ damages crystallins and cataract develops (right).  </figcaption>
 +
      </figure>
 +
                                <div class="col-sm-1"></div>
 +
                                <figure class = "col-sm-4">
 +
        <img src="https://static.igem.org/mediawiki/2016/6/6c/T--TAS_Taipei--New_vs_Old_Cells.jpeg">
 +
                                    <figcaption class='darkblue'><b>Figure 1.4.</b> Lens cells move towards the nucleus as they mature. Older cells have less GSH and are more susceptible to oxidative damage by H₂O₂. </figcaption>
 +
      </figure>
 +
                            </div>
 +
                          <br><br>
 +
                          <div class="row">
 +
                                <div class="col-sm-7">
 +
                                <p>
 +
                                    The current standard treatment for cataracts is surgery, which replaces the cloudy lens with a clear artificial lens. Surgery is effective, but like all surgeries, it is <b>invasive and requires professional equipment and trained surgeons.</b> These requirements add to the cost, which averages about $3,500 per eye in the US without insurance (Sigre, 2016), and is the biggest obstacle to solving cataracts worldwide. Through literature research, we found a molecule called 25-hydroxycholesterol (25HC) that can reverse protein aggregation. We hope to use this as an alternative to surgery to treat cataracts.
  
<a href="https://2017.igem.org/Special:Upload">
+
                                </p>
UPLOAD FILES
+
                                </div>
</a>
+
                              <figure class = "col-sm-5">
 +
        <img src="https://static.igem.org/mediawiki/2016/e/e2/T--TAS_Taipei--Surgery_Cataract.jpeg">
 +
                                    <figcaption class='darkblue' style="font-color:red"><b>Figure 1.5.</b> Our goal is to replace surgery with noninvasive eye drops that prevent and treat cataracts.</figcaption>
 +
      </figure>
 +
                            </div>
 +
 
 +
                        </div> <!-- Container -->
 +
                    </div> <!-- Container -->
 +
                   
 +
                   
 +
                   
 +
                  <div class = "row">
 +
              <div class="col-sm-12">
 +
        <h2 id = 'solution'>What is our Solution?</h2>
 +
                            <div class="row">
 +
                                <div class="col-sm-12">
 +
                                <p>
 +
                                    Our goal is to develop noninvasive, easy-to-use, and affordable eyedrops to prevent and treat cataracts (Figure 1.5).
 +
                                </p>
 +
                                </div>
 +
                            </div>
 +
                            <div class="row">
 +
                               
 +
                                <div class="col-sm-12">
 +
                                <h3 id="prevention">Prevention</h3>
 +
                                <p>
 +
                                    When GSH is present, H₂O₂ can oxidize GSH instead of crystallin proteins. When GSH becomes oxidized, a disulfide bond forms between two GSH molecules, which become oxidized glutathione (GSSG). Through literature research, we found an enzyme that recycles GSSG back into GSH. This enzyme is called glutathione reductase (GSR) (Ganea & Harding, 2006). As seen in Figure 1.6, GSR (green) recycles GSSG back into GSH, so that crystallin proteins remain protected. Even though GSR exists in the lens, its levels decrease with age, which leads to the development of cataracts (Michael & Bron, 2011). <b>Our goal is to independently produce and deliver GSR to the lens, so that cataract formation is prevented. </b>
 +
 
 +
                                </p>
 +
                                </div>
 +
                               
 +
                            </div>
 +
                            <div class="row">
 +
                               
 +
                               
 +
                               
 +
                                    <div class="col-sm-4"><img src="https://static.igem.org/mediawiki/2016/b/b0/T--TAS_Taipei--ClearAnimation1.gif"></div>
 +
                                   
 +
                                    <div class="col-sm-4"><img src="https://static.igem.org/mediawiki/2016/3/30/T--TAS_Taipei--BlurredAnimation1.gif"></div>
 +
                                   
 +
                                    <div class="col-sm-4"><img src="https://static.igem.org/mediawiki/2016/7/7f/T--TAS_Taipei--AnimatinoLegend.gif"></div>
 +
                                   
 +
    <figure class = "col-sm-12"> 
 +
                                    <figcaption class='darkblue'><b>Figure 1.6 </b>In a normal lens (left), GSR (enzyme, in green) converts GSSG into GSH. H₂O₂ oxidizes GSH instead of crystallin proteins, so that crystallin proteins remain protected, and the lens remains clear. In a cataractous lens (right), GSR levels are low so GSH cannot be remade. Since GSH is not present to protect proteins against H₂O₂, cataracts begin to develop. </figcaption>
 +
                                </figure>
 +
                               
 +
                               
 +
                               
 +
                            </div>
 +
                          <br><br>
 +
                         
 +
                          <div class="row">
 +
                               
 +
                                <div class="col-sm-8">
 +
                                <h3 id="treatment">Treatment</h3>
 +
                                <p>
 +
                                    We also found a molecule that can restore solubility of protein clumps and lens transparency. It is called 25-hydroxycholesterol (25HC) (Makley et al., 2015). 25HC can be produced from cholesterol by the enzyme cholesterol 25-hydroxylase (CH25H) (Figure 1.7). Our goal is to independently produce and deliver CH25H to the lens, so that cataracts can be treated.
 +
 +
                                </p>
 +
                                </div>
 +
                                <figure class = "col-sm-4">
 +
        <img src="https://static.igem.org/mediawiki/2016/7/7c/T--TAS_Taipei--CH25HRxnDescription.png">
 +
                                    <figcaption class='darkblue'><b>Figure 1.7. </b>CH25H (enzyme) converts cholesterol to 25HC, which can reverse protein clumps.
 +
</figcaption>
 +
                                    </figure>
 +
                                </div>
 +
                               
 +
                            </div>
 +
                         
 +
                         
 +
 
 +
                        </div> <!-- Container -->
 +
                    <br><br>
 +
                    <div class = "row">
 +
  <div class="col-sm-12">
 +
<h3>Citations</h3>
 +
<p>Cvekl, A., & Ashery-Padan, R. (2014). The cellular and molecular mechanisms of vertebrate lens development. Development, 141(23), 4432-4447.
 
</p>
 
</p>
 +
        <br>
 +
<p>Ganea, E. & Harding, J. J. (2006). Glutathione-related enzymes and the eye. Curr Eye Res., 31(1), 1–11
 +
</p> <br>
 +
<p>Giblin, F. J. (2000). Glutathione: a vital lens antioxidant. Journal of Ocular Pharmacology and Therapeutics, 16(2), 121-135.
 +
</p> <br>
 +
<p>Giorgio, M., Trinei, M., Migliaccio, E., & Pelicci, P. (2007). Nature Reviews Molecular Cell Biology, 8(9), 722-8.
 +
</p> <br>
 +
<p>Makley, L. N., McMenimen, K. A., DeVree, B. T., Goldman, J. W., McGlasson, B. N., Rajagopal, P., Dunyak, B.M., McQuade, T.J., Thompson, A.D., Sunahara, R., Klevit, R.E., Andley, U.P., and Gestwicki, J.E. (2015). Pharmacological chaperone for α-crystallin partially restores transparency in cataract models. Science, 350(6261), 674-677.
 +
</p> <br>
 +
<p>Michael, R., & Bron, A. J. (2011). The ageing lens and cataract: a model of normal and pathological ageing. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 366(1568), 1278-1292.
 +
</p> <br>
 +
<p>National Eye Institute | Cataracts. (n.d.). Retrieved October 04, 2016, from https://nei.nih.gov/eyedata/cataract
 +
</p> <br>
 +
<p>Segre L (2016, Sept. 21). Cataract surgery cost. Retrieved from http://www.allaboutvision.com/conditions/cataract-surgery-cost.htm
 +
</p> <br>
 +
<p>Truscott, RJ (2005). Age-related nuclear cataract-oxidation is the key. Exp Eye Res., 80(5): 709-25.
 +
</p> <br>
 +
<p>World Health Organization | Priority eye diseases. (n.d.). Retrieved October 03, 2016, from http://www.who.int/blindness/causes/priority/en/index1.html
 +
</p> <br>
 +
<p></p> <br> <br>           
 +
  </div>
 +
    </div>
 +
 +
                   
 +
 +
 +
 +
                   
 +
</div>
 +
 +
</div>
 +
    </div>
 +
 +
<br>
 +
<br><br>
 +
 +
<canvas id="canvas-container" style = "z-index:-1"></canvas>
 +
<script type="text/javascript" src='https://2016.igem.org/Template:TAS_Taipei/js/field?action=raw&ctype=text/javascript'></script>
 +
 +
</body>
 +
 +
 +
 +
 +
 +
 +
 +
 +
<style type='text/css'>
 +
    #bg { position: fixed; top: 0; left: 0; }
 +
    .bgwidth { width: 100%; }
 +
    .bgheight { height: 100%; }
 +
</style>
 +
 +
<div class="backgroundpic">
 +
<img src="https://static.igem.org/mediawiki/2016/e/e5/T--TAS_Taipei--Taipei_Background_1.0.jpg" style="z-index:0" width="100%" height="100%" id="bg" alt="" >
 
</div>
 
</div>
 +
 +
<script>
 +
var nowRadius = 0
 +
$(function() {
 +
    if (screen.width > 1800)
 +
      $("#slideoutco").fadeOut(0);
 +
   
 +
    $({blurRadius: 0}).animate({blurRadius: 10}, {
 +
        duration: 20000,
 +
        easing:'swing', // or "linear"
 +
                        // use jQuery UI or Easing plugin for more options
 +
        step: function() {
 +
            console.log(this.blurRadius);
 +
            if ($("#bluebutton").hasClass("isOn") ) {return;};
 +
            if($('#redbutton').hasClass("isOn") ) {return;}
 +
            $('.backgroundpic').css({
 +
                "-webkit-filter": "blur("+this.blurRadius+"px)",
 +
                "filter": "blur("+this.blurRadius+"px)"
 +
 +
            });
 +
            nowRadius = this.blurRadius;
 +
        var LOCSnum = Math.round(nowRadius*6/9);
 +
        var NineLOCSnum = Math.round(nowRadius*6/9*10);
 +
        /**if (NineLOCSnum > 20) switchMessage("YELLOW","<b> Oh no! </b> Cataracts are forming! Click on the Eyedrop Tab and get <b>TREATMENT</b> eyedrops!", currentColor()=="GREEN");
 +
        if (NineLOCSnum == 55) $("#slideoutco").fadeOut(1000);
 +
        if (NineLOCSnum > 60) switchMessage("RED","Your cataracts are very severe. You need to get TREATMENT fast by clicking the Eyedrop Tab", currentColor()=="YELLOW");*/
 +
        if (LOCSnum > 6) {LOCSnum = "6+"; $('#LOCS').text(LOCSnum+"");}
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        else $('#LOCS').text(LOCSnum+"");
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        if (LOCSnum ==0) document.getElementById('bluebutton').click();
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    });
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});
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startBlur= function(speed) {
 +
    $({blurRadius: nowRadius}).animate({blurRadius: 10}, {
 +
        duration: speed,
 +
        easing: 'swing', // or "linear"
 +
                        // use jQuery UI or Easing plugin for more options
 +
        step: function() {
 +
            console.log(this.blurRadius);
 +
            if ($("#bluebutton").hasClass("isOn") ) {return;};
 +
            if($('#redbutton').hasClass("isOn") ) {return;}
 +
 +
            $('.backgroundpic').css({
 +
                "-webkit-filter": "blur("+this.blurRadius+"px)",
 +
                "filter": "blur("+this.blurRadius+"px)"
 +
 +
            });
 +
 +
        nowRadius = this.blurRadius;
 +
        var LOCSnum = Math.round(nowRadius*6/9);
 +
        var NineLOCSnum = Math.round(nowRadius*6/9*10);
 +
        /**if (NineLOCSnum == 15) $("#slideoutco").fadeOut(400);
 +
        if (NineLOCSnum > 20) switchMessage("RED","<b>Cataracts</b> are creeping back again! Click the PREVENTION eyedrop to add GSR into your eyes!", currentColor()=="BLUE");*/
 +
        if (LOCSnum > 6) {LOCSnum = "6+"; $('#LOCS').text(LOCSnum+"");}
 +
        else $('#LOCS').text(LOCSnum+" ");
 +
       
 +
       
 +
        }
 +
    });
 +
};
 +
 +
stopBlur= function(speed) {
 +
 +
    $({blurRadius: nowRadius}).animate({blurRadius: 0}, {
 +
        duration: speed,
 +
        easing: 'swing', // or "linear"
 +
                        // use jQuery UI or Easing plugin for more options
 +
        step: function() {
 +
            console.log(this.blurRadius);
 +
        if ($("#redbutton").hasClass("isOn") ) {} else{return;};
 +
            $('.backgroundpic').css({
 +
                "-webkit-filter": "blur("+this.blurRadius+"px)",
 +
                "filter": "blur("+this.blurRadius+"px)"
 +
 +
            });
 +
        nowRadius = this.blurRadius;
 +
        var LOCSnum = Math.round(nowRadius*6/9);
 +
        var NineLOCSnum = Math.round(nowRadius*6/9*10);
 +
         
 +
        /**if (NineLOCSnum < 68){ if (NineLOCSnum > 10) if(currentColor()=="RED" ||  currentColor() == "BLUE") $("#slideoutco").fadeOut(0); switchMessage("YELLOW","<b> Treating</b> your cataract with <b>25HC Eyedrops </b>", currentColor()=="RED");
 +
                              }
 +
        if (NineLOCSnum == 9) $("#slideoutco").fadeOut(0);
 +
       
 +
           
 +
        if (NineLOCSnum < 5) {
 +
            if ($("#bluebutton").hasClass("isOn")){
 +
                   
 +
                switchMessage("GREEN","<b>Your eyes are <i>pernamently</i> crystal clear!</b> Treatment is not needed, so don't forget to turn it off!. Click the question mark to learn more.", currentColor()=="BLUE")
 +
            }
 +
            else switchMessage("BLUE","Your eyes are crystal clear! To avoid waste, please turn off the <b>TREATMENT</b> eyedrop.", currentColor()=="YELLOW");
 +
        }*/
 +
        if (LOCSnum > 6) LOCSnum = "6+";
 +
        else LOCSnum = LOCSnum +" ";
 +
        $('#LOCS').text(LOCSnum+"");   
 +
       
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        }
 +
    });
 +
   
 +
   
 +
};
 +
 +
function chooseBlur() {
 +
  if ($("#redbutton").hasClass("isOn") )
 +
      {
 +
      stopBlur(4500);
 +
 
 +
            }
 +
 
 +
    else {
 +
            if($("#bluebutton").hasClass("isOn") ) {}
 +
            else {startBlur(12000);}
 +
          }
 +
    /**if (!$("#redbutton").hasClass("isOn"))
 +
        if ($("#bluebutton").hasClass("isOn"))
 +
            {
 +
                $("#slideoutco").fadeOut(0);
 +
                switchMessage("BLUE","Great! Furthur cataract formation is prevented with GSR Eyedrops. Now use <b>TREATMENT</b> eyedrops one last time.", currentColor()=="RED")
 +
            }*/
 +
};
 +
 +
 +
</script>
 +
 +
<script>
 +
 +
function switchToggleB() {
 +
    if ( $("#bluebutton").hasClass("isOn") ) {
 +
        $("#bluebutton").removeClass("isOn"); }
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  else { $("#bluebutton").addClass("isOn"); }
 +
};
 +
function switchToggleR() {
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 +
        $("#redbutton").removeClass("isOn"); }
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  else { $("#redbutton").addClass("isOn"); }
 +
};
 +
   
 +
function currentColor() {
 +
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 +
        return "RED";
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    if ($("#slidecontenttext").hasClass("alert-warning"))
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        return "YELLOW";
 +
    if ($("#slidecontenttext").hasClass("alert-info"))
 +
        return "BLUE";
 +
    if ($("#slidecontenttext").hasClass("alert-success"))
 +
        return "GREEN";
 +
    else return "NONE"
 +
};
 +
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 +
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 +
    {$(entirebox).fadeOut(100);
 +
    if ($("#slidecontenttext").hasClass("alert-danger"))
 +
        $("#slidecontenttext").removeClass("alert-danger");
 +
    if ($("#slidecontenttext").hasClass("alert-warning"))
 +
        $("#slidecontenttext").removeClass("alert-warning");
 +
    if ($("#slidecontenttext").hasClass("alert-info"))
 +
        $("#slidecontenttext").removeClass("alert-info");
 +
    if ($("#slidecontenttext").hasClass("alert-success"))
 +
        $("#slidecontenttext").removeClass("alert-success");
 +
    if (color == "RED")
 +
        $("#slidecontenttext").addClass("alert-danger");
 +
    if (color == "YELLOW")
 +
        $("#slidecontenttext").addClass("alert-warning");
 +
    if (color == "BLUE")
 +
        $("#slidecontenttext").addClass("alert-info");
 +
    if (color == "GREEN")
 +
        $("#slidecontenttext").addClass("alert-success");
 +
   
 +
   
 +
    $("#slidecontenttext").html(textInside);
 +
    $(entirebox).fadeIn(500);
 +
    }
 +
   
 +
};
 +
 +
 +
</script>
 +
 +
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Revision as of 08:52, 1 November 2017


Background - TAS Taipei iGEM Wiki





Background

Cataracts are the leading cause of blindness today, affecting 20 million people worldwide (World Health Organization). Half of Americans above 80 years old are affected by cataracts (National Eye Institute), and so are many animals! The National Eye Institute projects that in 30 years, the number of cataract patients will increase to 50 million (National Eye Institute).

What are Cataracts?

The lens is mostly made of proteins called crystallins. Crystallin proteins are normally soluble, which keeps the lens clear and allows light entering the eye to focus. When these proteins are damaged, they form insoluble clumps (Truscott, 2005). This causes the clouding seen in cataractous lenses, which scatters light and in turn makes vision blurry (Figure 1.1).

Figure 1.1. Cataracts scatter light coming through the lens, which blurs vision.


Cataracts can be caused by many factors, including radiation and diabetes, but the underlying cause is oxidative damage. Oxidative damage happens when unstable chemicals containing oxygen react with DNA, lipids, or proteins, disrupting cellular functions (Truscott, 2005). In the lens, crystallin proteins can be oxidized by hydrogen peroxide (H₂O₂), which is a reactive molecule produced during aerobic respiration (Giorgio et al., 2007). H₂O₂ reacts with protein residues and changes the shape of the protein. When two cysteine residues on separate proteins are oxidized by H₂O₂, for example, they can form a disulfide bond, which links these proteins together. The damaged proteins thus aggregate and form clumps in the lens (Truscott, 2005) (Figure 1.2).

Figure 1.2. Oxidative damage by H₂O₂ can lead to proteins misfolding, breaking apart, and clumping.


In the eye, a natural antioxidant called glutathione (GSH) exists, which can convert H₂O₂ into water (Giblin, 2000). With age, however, GSH levels decrease, and oxidative damage caused by H₂O₂ increases. When there is more H₂O₂ in the lens than GSH can remove, crystallins become damaged (Figure 1.3). When GSH levels are low, H₂O₂ starts to oxidize crystallins and cause cataracts. As lens cells age, they move towards the nucleus and their GSH levels fall (Cvekl & Ashery-Padan, 2014), which may explain why the older cells in the lens nucleus are more prone to developing cataracts



Figure 1.3. Antioxidants protects proteins from oxidative damage by H₂O₂ (left). When antioxidant levels are low, H₂O₂ damages crystallins and cataract develops (right).
Figure 1.4. Lens cells move towards the nucleus as they mature. Older cells have less GSH and are more susceptible to oxidative damage by H₂O₂.


The current standard treatment for cataracts is surgery, which replaces the cloudy lens with a clear artificial lens. Surgery is effective, but like all surgeries, it is invasive and requires professional equipment and trained surgeons. These requirements add to the cost, which averages about $3,500 per eye in the US without insurance (Sigre, 2016), and is the biggest obstacle to solving cataracts worldwide. Through literature research, we found a molecule called 25-hydroxycholesterol (25HC) that can reverse protein aggregation. We hope to use this as an alternative to surgery to treat cataracts.

Figure 1.5. Our goal is to replace surgery with noninvasive eye drops that prevent and treat cataracts.

What is our Solution?

Our goal is to develop noninvasive, easy-to-use, and affordable eyedrops to prevent and treat cataracts (Figure 1.5).

Prevention

When GSH is present, H₂O₂ can oxidize GSH instead of crystallin proteins. When GSH becomes oxidized, a disulfide bond forms between two GSH molecules, which become oxidized glutathione (GSSG). Through literature research, we found an enzyme that recycles GSSG back into GSH. This enzyme is called glutathione reductase (GSR) (Ganea & Harding, 2006). As seen in Figure 1.6, GSR (green) recycles GSSG back into GSH, so that crystallin proteins remain protected. Even though GSR exists in the lens, its levels decrease with age, which leads to the development of cataracts (Michael & Bron, 2011). Our goal is to independently produce and deliver GSR to the lens, so that cataract formation is prevented.

Figure 1.6 In a normal lens (left), GSR (enzyme, in green) converts GSSG into GSH. H₂O₂ oxidizes GSH instead of crystallin proteins, so that crystallin proteins remain protected, and the lens remains clear. In a cataractous lens (right), GSR levels are low so GSH cannot be remade. Since GSH is not present to protect proteins against H₂O₂, cataracts begin to develop.


Treatment

We also found a molecule that can restore solubility of protein clumps and lens transparency. It is called 25-hydroxycholesterol (25HC) (Makley et al., 2015). 25HC can be produced from cholesterol by the enzyme cholesterol 25-hydroxylase (CH25H) (Figure 1.7). Our goal is to independently produce and deliver CH25H to the lens, so that cataracts can be treated.

Figure 1.7. CH25H (enzyme) converts cholesterol to 25HC, which can reverse protein clumps.


Citations

Cvekl, A., & Ashery-Padan, R. (2014). The cellular and molecular mechanisms of vertebrate lens development. Development, 141(23), 4432-4447.


Ganea, E. & Harding, J. J. (2006). Glutathione-related enzymes and the eye. Curr Eye Res., 31(1), 1–11


Giblin, F. J. (2000). Glutathione: a vital lens antioxidant. Journal of Ocular Pharmacology and Therapeutics, 16(2), 121-135.


Giorgio, M., Trinei, M., Migliaccio, E., & Pelicci, P. (2007). Nature Reviews Molecular Cell Biology, 8(9), 722-8.


Makley, L. N., McMenimen, K. A., DeVree, B. T., Goldman, J. W., McGlasson, B. N., Rajagopal, P., Dunyak, B.M., McQuade, T.J., Thompson, A.D., Sunahara, R., Klevit, R.E., Andley, U.P., and Gestwicki, J.E. (2015). Pharmacological chaperone for α-crystallin partially restores transparency in cataract models. Science, 350(6261), 674-677.


Michael, R., & Bron, A. J. (2011). The ageing lens and cataract: a model of normal and pathological ageing. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 366(1568), 1278-1292.


National Eye Institute | Cataracts. (n.d.). Retrieved October 04, 2016, from https://nei.nih.gov/eyedata/cataract


Segre L (2016, Sept. 21). Cataract surgery cost. Retrieved from http://www.allaboutvision.com/conditions/cataract-surgery-cost.htm


Truscott, RJ (2005). Age-related nuclear cataract-oxidation is the key. Exp Eye Res., 80(5): 709-25.


World Health Organization | Priority eye diseases. (n.d.). Retrieved October 03, 2016, from http://www.who.int/blindness/causes/priority/en/index1.html







Prevention

GSR Eyedrop

Treatment

25HC Eyedrop

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Eyedrops




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