Difference between revisions of "Team:Tianjin/Design"

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         <p>Synthetic Yeast Genome Project (Sc2.0) is the world’s first synthetic eukaryotic genome project that aims to create a novel, rationalized version of the genome of the yeast species Saccharomyces cerevisiae. On March 10th, 7 articles related to Sc 2.0 were published on Science. As a member of Sc 2.0, YJ lab has completed two synthetic yeast chromosomes, and two articles are published on Science discussing challenging but exciting task of building synthetic chromosomes V, X .</p>
 
         <p>Synthetic Yeast Genome Project (Sc2.0) is the world’s first synthetic eukaryotic genome project that aims to create a novel, rationalized version of the genome of the yeast species Saccharomyces cerevisiae. On March 10th, 7 articles related to Sc 2.0 were published on Science. As a member of Sc 2.0, YJ lab has completed two synthetic yeast chromosomes, and two articles are published on Science discussing challenging but exciting task of building synthetic chromosomes V, X .</p>
 
         <h5>Cre-<i>loxpsym</i> System</h5>
 
         <h5>Cre-<i>loxpsym</i> System</h5>
         <p>As a part of the Sc2.0 Project , yeast chromosomes are targets, named <i>loxPsym</i> sites. <i>loxPsym</i> sites are substrates for Cre-EBD , which is an inducible form of the appropriate site-specific recombinase. Results of the recombination events are dependent on the directionality of the loxp sites. Because of the asymmetry of the loxp sites, when a pair of loxp sites is present in the same DNA strand and they are in opposite orientations, the Cre recombinase will catalyze the inversion of the gene in between the loxp sites; when the loxp sites are in same orientation, this gene will be deleted. Unlike the native directional <i>loxP</i> site, which permits a single orientation for recombination, the synthetic <i>loxPsym</i> site’s symmetry ensures that any pair of sites can recom- bine in either orientation. Then, controlled expression of Cre-EBD leads to deletions and inversions with chromosome segments flanked by <i>loxPsym</i> sites. This characteristic allows more possibilities of recombination on yeast chromosome which lives up to our expectations. </p>
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         <p>As a part of the Sc2.0 Project , yeast chromosomes are targets, named <i>loxPsym</i> sites. <i>loxPsym</i> sites are substrates for Cre-EBD , which is an inducible form of the appropriate site-specific recombinase. Results of the recombination events are dependent on the directionality of the loxp sites. Because of the asymmetry of the loxp sites, when a pair of loxp sites is present in the same DNA strand and they are in opposite orientations, the Cre recombinase will catalyze the inversion of the gene in between the loxp sites; when the loxp sites are in same orientation, this gene will be deleted. Unlike the native directional <i>loxP</i> site, which permits a single orientation for recombination, the synthetic <i>loxPsym</i> site’s symmetry ensures that any pair of sites can recombine in either orientation. Then, controlled expression of Cre-EBD leads to deletions and inversions with chromosome segments flanked by <i>loxPsym</i> sites<sup>[1]</sup>.This characteristic allows more possibilities of recombination on yeast chromosome which lives up to our expectations. </p>
 
          
 
          
  
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                         <a href="#pic_ones">
 
                         <a href="#pic_ones">
 
                           <img src="https://static.igem.org/mediawiki/2017/c/cb/Tud1.png"></a>
 
                           <img src="https://static.igem.org/mediawiki/2017/c/cb/Tud1.png"></a>
<p style="font-size:15px;text-align:center"><br/>Fig. 3.1 The left : when the <i>loxp</i> sites are in same orientation, this gene will be deleted. The middle : when the <i>loxp</i> sites are in opposite orientations, this gene will be inversed. The right : when the <i>loxp</i> sites are on different chromosomes, the gene will be exchanged.</p>
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<p style="font-size:15px;text-align:center"><br/>Fig. 3.1 The left : when the <i>loxp</i> sites are in same orientation, this gene will be deleted. The middle : when the <i>loxp</i> sites are in opposite orientations, this gene will be inversed. The right : when the <i>loxp</i> sites are on different chromosomes, the gene will be exchanged<sup>[2]</sup>.</p>
 
                     </div>
 
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                   <div id="pic_fours" style="display:none;"><img src="https://static.igem.org/mediawiki/2017/0/00/Tud5.png"><p style="font-size:15px;text-align:center"><br/>Fig. 3.5 Measurement of cell survival rate</p></div>
 
                   <div id="pic_fours" style="display:none;"><img src="https://static.igem.org/mediawiki/2017/0/00/Tud5.png"><p style="font-size:15px;text-align:center"><br/>Fig. 3.5 Measurement of cell survival rate</p></div>
  
 
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<h4>REFERENCE</h4>
  
 
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Revision as of 11:37, 1 November 2017

/* OVERRIDE IGEM SETTINGS */

Design


Background

Human existence on earth is almost impossible without the heavy metals. Even though important to mankind, exposure to them during production, usage and their uncontrolled discharge into the environment has caused lots of hazards to man, other organisms and the environment itself. Heavy metals can enter human tissues and organs via inhalation, diet, and manual handling. As the process of urbanization and industrialization goes deeper and deeper, heavy metal pollution, a noticeable threaten to almost all the creatures, has become an essential problem to solve.

According to our human practice, the situation of heavy metal pollution (copper and cadmium ions) is marked on a world map, and the severity of heavy metal pollution has been increasing all over this map. Places with serious pollution include middle Asia, eastern Asia, southern Europe, and Latin America. In addition, not only fresh water source, but also soil and crops are seriously contaminated by heavy metals. On average, during three out of ten suppers we have, we absorb excess heavy metals over the standard concentration.

Considering the rigorous situation we face, our team decided to design an advanced system for typical toxic heavy metal disposal based on Saccharomyces cerevisiae.