|
|
Line 161: |
Line 161: |
| <script> | | <script> |
| trace1 = { | | trace1 = { |
− | x: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'], | + | x: ['Wildtype ORI', '0.15 Anderson', '0.36 Anderson', '0.86 Anderson', '1.0 Anderson'], |
− | y: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'], | + | y: ['53.92', '38.23', '173.18', '52.43', '38.23'], |
− | z: ['1161.534157', '485.1531873', '317.4314997', '240.09467', '195.1460051', '165.5015003', '144.6457981', '128.9499534', '116.7442271', '106.9187501', '98.8988822', '92.23327184', '86.53944727', '81.64365347', '77.37633104', '73.63626505', '70.33596199', '67.38211112', '64.75012237', '62.36135528'],
| + | error_y: { |
− | hoverinfo: 'x', | + | array: ['3.30', '6', '5.46', '5.46', '6'], |
− | line: {width: 10},
| + | arraysrc: 'laurynas.karpus:0:e7cb99' |
− | marker: {
| + | |
− | color: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'], | + | |
− | colorsrc: 'laurynas.karpus:14:c60033',
| + | |
− | size: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | sizemode: 'area', | + | |
− | sizeref: 0.00125,
| + | |
− | sizesrc: 'laurynas.karpus:14:2511a0'
| + | |
| }, | | }, |
− | mode: 'lines', | + | marker: {color: 'rgb(227, 218, 177)'}, |
− | name: 'C',
| + | name: 'B', |
− | opacity: 1,
| + | type: 'bar', |
− | text: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | uid: '6a45cd', |
− | textsrc: 'laurynas.karpus:14:c60033', | + | xsrc: 'laurynas.karpus:0:2c46ab', |
− | type: 'scatter3d', | + | ysrc: 'laurynas.karpus:0:92440e' |
− | uid: '4950b2', | + | |
− | visible: true,
| + | |
− | xsrc: 'laurynas.karpus:14:c60033', | + | |
− | ysrc: 'laurynas.karpus:14:2511a0', | + | |
− | zsrc: 'laurynas.karpus:14:6c2383'
| + | |
| }; | | }; |
− | trace2 = {
| + | data = [trace1]; |
− | x: ['0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002', '0.002'],
| + | |
− | y: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | z: ['1113.532011', '466.0841019', '304.8021047', '230.3218111', '187.0686465', '158.6244072', '138.4720689', '123.3725546', '111.632144', '102.1834682', '94.47434498', '88.02791435', '82.58737691', '77.88194613', '73.78171609', '70.18950568', '67.01246502', '64.17975144', '61.64825258', '59.35051272'],
| + | |
− | hoverinfo: 'x',
| + | |
− | line: {width: 10},
| + | |
− | marker: {
| + | |
− | color: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | colorsrc: 'laurynas.karpus:14:c60033',
| + | |
− | size: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | sizemode: 'area',
| + | |
− | sizeref: 0.00125,
| + | |
− | sizesrc: 'laurynas.karpus:14:2511a0'
| + | |
− | },
| + | |
− | mode: 'lines',
| + | |
− | name: 'F',
| + | |
− | opacity: 1,
| + | |
− | text: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | textsrc: 'laurynas.karpus:14:c60033',
| + | |
− | type: 'scatter3d',
| + | |
− | uid: '32235f',
| + | |
− | visible: true,
| + | |
− | xsrc: 'laurynas.karpus:14:ef8f34',
| + | |
− | ysrc: 'laurynas.karpus:14:f5b7c2',
| + | |
− | zsrc: 'laurynas.karpus:14:6c9c18'
| + | |
− | };
| + | |
− | trace3 = {
| + | |
− | x: ['0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003', '0.003'],
| + | |
− | y: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | z: ['1068.138203', '447.9016298', '292.7501351', '221.0301352', '179.4014546', '152.0245397', '132.616669', '118.0923266', '106.7903232', '97.74555751', '90.29034693', '84.0939546', '78.86312682', '74.33411599', '70.40200904', '66.94077325', '63.88570723', '61.16026731', '58.71334888', '56.5196223'],
| + | |
− | hoverinfo: 'x',
| + | |
− | line: {width: 10},
| + | |
− | marker: {
| + | |
− | color: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | colorsrc: 'laurynas.karpus:14:c60033',
| + | |
− | size: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | sizemode: 'area',
| + | |
− | sizeref: 0.00125,
| + | |
− | sizesrc: 'laurynas.karpus:14:2511a0'
| + | |
− | },
| + | |
− | mode: 'lines',
| + | |
− | name: 'I',
| + | |
− | opacity: 1,
| + | |
− | text: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | textsrc: 'laurynas.karpus:14:c60033',
| + | |
− | type: 'scatter3d',
| + | |
− | uid: '674c16',
| + | |
− | visible: true,
| + | |
− | xsrc: 'laurynas.karpus:14:dbcd13',
| + | |
− | ysrc: 'laurynas.karpus:14:cb8b27',
| + | |
− | zsrc: 'laurynas.karpus:14:89a9fc'
| + | |
− | };
| + | |
− | trace4 = {
| + | |
− | x: ['0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004', '0.004'],
| + | |
− | y: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | z: ['1024.343137', '430.6205751', '281.1991613', '212.2063438', '172.1014041', '145.7537315', '127.067358', '113.0884257', '102.2113029', '93.5044783', '86.36593747', '80.374216', '75.31682994', '70.9859326', '67.20397905', '63.87044375', '60.92666805', '58.31942927', '55.96467298', '53.85225605'],
| + | |
− | hoverinfo: 'x',
| + | |
− | line: {width: 10},
| + | |
− | marker: {
| + | |
− | color: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | colorsrc: 'laurynas.karpus:14:c60033',
| + | |
− | size: ['0.05', '0.1', '0.15', '0.2', '0.25', '0.3', '0.35', '0.4', '0.45', '0.5', '0.55', '0.6', '0.65', '0.7', '0.75', '0.8', '0.85', '0.9', '0.95', '1'],
| + | |
− | sizemode: 'area',
| + | |
− | sizeref: 0.00125,
| + | |
− | sizesrc: 'laurynas.karpus:14:2511a0'
| + | |
− | },
| + | |
− | mode: 'lines',
| + | |
− | name: 'L',
| + | |
− | opacity: 1,
| + | |
− | text: ['0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001', '0.001'],
| + | |
− | textsrc: 'laurynas.karpus:14:c60033',
| + | |
− | type: 'scatter3d',
| + | |
− | uid: '1db688',
| + | |
− | visible: true,
| + | |
− | xsrc: 'laurynas.karpus:14:70a305',
| + | |
− | ysrc: 'laurynas.karpus:14:946fa0',
| + | |
− | zsrc: 'laurynas.karpus:14:d689d1'
| + | |
− | };
| + | |
− | data = [trace1, trace2, trace3, trace4]; | + | |
| layout = { | | layout = { |
| autosize: true, | | autosize: true, |
| + | bargap: 0.34, |
| + | bargroupgap: 0.32, |
| + | dragmode: 'select', |
| + | font: {color: 'rgb(255, 255, 255)'}, |
| hovermode: 'closest', | | hovermode: 'closest', |
− | scene: { | + | legend: { |
− | aspectmode: 'auto', | + | orientation: 'v', |
− | aspectratio: { | + | traceorder: 'normal' |
− | x: 1,
| + | |
− | y: 1,
| + | |
− | z: 1
| + | |
− | },
| + | |
− | camera: {
| + | |
− | center: {
| + | |
− | x: 0,
| + | |
− | y: 0,
| + | |
− | z: 0
| + | |
− | },
| + | |
− | eye: {
| + | |
− | x: 1.2941212693,
| + | |
− | y: 1.40339335785,
| + | |
− | z: 0.777055698037
| + | |
− | },
| + | |
− | up: {
| + | |
− | x: 0,
| + | |
− | y: 0,
| + | |
− | z: 1
| + | |
− | }
| + | |
− | },
| + | |
− | xaxis: {
| + | |
− | title: 'Growth rate',
| + | |
− | titlefont: {size: 13},
| + | |
− | type: 'linear'
| + | |
− | },
| + | |
− | yaxis: {
| + | |
− | autorange: false,
| + | |
− | nticks: 5,
| + | |
− | range: [0, 1],
| + | |
− | title: 'Anderson strength',
| + | |
− | titlefont: {size: 13},
| + | |
− | type: 'linear'
| + | |
− | },
| + | |
− | zaxis: {
| + | |
− | title: 'Copy number',
| + | |
− | titlefont: {size: 11},
| + | |
− | type: 'linear'
| + | |
− | }
| + | |
| }, | | }, |
| + | paper_bgcolor: 'rgb(69, 194, 189)', |
| + | plot_bgcolor: 'rgba(23, 190, 207, 0)', |
| showlegend: false, | | showlegend: false, |
− | title: 'Copy number dependence on growth rate with different constitutive Anderson promoters', | + | title: 'RNA I gene with a set of constitutive (Anderson) promoters with specific relative strength', |
| + | titlefont: {color: 'rgb(255, 255, 255)'}, |
| xaxis: { | | xaxis: { |
− | title: 'A', | + | autorange: true, |
− | type: 'linear' | + | range: [-0.5, 4.5], |
| + | showspikes: true, |
| + | title: '', |
| + | type: 'category' |
| }, | | }, |
| yaxis: { | | yaxis: { |
− | title: 'B', | + | autorange: true, |
| + | range: [0, 188.042105263], |
| + | showspikes: true, |
| + | title: 'Plasmid copy number (PCN)', |
| type: 'linear' | | type: 'linear' |
| } | | } |
| }; | | }; |
− | Plotly.plot('plotly-div', {
| + | window.onload = function(e){ |
| + | laurynaskarpus = document.getElementById('laurynaskarpus'); |
| + | Plotly.plot(laurynaskarpus, { |
| data: data, | | data: data, |
| layout: layout | | layout: layout |