Team:SJTU-BioX-Shanghai/Color Chart
Color ChartWe developed a tool which could create a inducer-color matching chart. This color chart could be either stored in our mobile APP or printed as a convenient inducer-color matching tool, by which we could easily quantify two kinds of inducers at the same time. This tool was developed in MATLAB by utilizing image processing methods.
1.Read an image.
2.Find standard area center.
3.Calculate standard area RGB sperately.
4.Make a gradient color figure by linear interpolation.
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function f = igem
%initialize
close all
clc
RGB = imread( 'test.jpg' );
ion1='As'; ion2='IPTG'; ion1concentration=[0,0.2,0.4]; ion2concentration=...
[0,0.1,0.2];
ion1num=size(ion1concentration,2);
ion2num=size(ion2concentration,2);
fprintf('%s have %.0f ranks,%s have %.0f\n ranks',ion1,ion1num,ion2,ion2num)
%% mark standard area, calculate RGB and output ion1num*ion2num matrix
R = RGB( :, :, 1 );
G = RGB( :, :, 2 );
B = RGB( :, :, 3 );
StandardArea = [200,200,100;500,200,100;800,200,100;...
200,500,100;500,500,100;800,500,100;...
200,800,100;500,800,100;800,800,100];
% marker = insertShape(RGB,'circle',StandardArea,'LineWidth',5 ,...
% 'Color', 'red','Opacity',0.7) %mark
[m,n]=size(StandardArea);
StandardRadius=StandardArea(1,3);
StandardCenter=StandardArea(:,1:2);
for i=1:m %For every area
k=0;AllR=0;AllG=0;AllB=0;
for x=(StandardCenter(i,1)-StandardRadius):(StandardCenter(i,1)+StandardRadius)
for y=(StandardCenter(i,2)-StandardRadius):(StandardCenter(i,2)+StandardRadius)
if sqrt((x-StandardCenter(i,1))^2+(y-StandardCenter(i,2))^2) Something something something something something something something something something Something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something Something something something something something something something something something Something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something something
