Difference between revisions of "Team:ETH Zurich/Parts"
| Line 38: | Line 38: | ||
<!--<td>Image</td>--> | <!--<td>Image</td>--> | ||
<td>Azurin</td> | <td>Azurin</td> | ||
| − | <td> | + | <td>Redox protein originating from <span class="bacterium">P. aeruginosa</span> with anti-cancer activity</td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500001">BBa_K2500001</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500001">BBa_K2500001</a></td> | ||
</tr> | </tr> | ||
| Line 56: | Line 56: | ||
<!--<td>Image</td>--> | <!--<td>Image</td>--> | ||
<td>TlpA</td> | <td>TlpA</td> | ||
| − | <td> | + | <td>Temperature-dependent transcriptional repressor of p<sub>Tlpa</sub></td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500004">BBa_K2500004</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500004">BBa_K2500004</a></td> | ||
</tr> | </tr> | ||
| Line 62: | Line 62: | ||
<!--<td>Image</td>--> | <!--<td>Image</td>--> | ||
<td>RBS_TlpA</td> | <td>RBS_TlpA</td> | ||
| − | <td> | + | <td>Temperature-dependent transcriptional repressor of p<sub>Tlpa</sub> and synthetic RBS</td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500005">BBa_K2500005</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500005">BBa_K2500005</a></td> | ||
</tr> | </tr> | ||
| Line 68: | Line 68: | ||
<!--<td>Image</td>--> | <!--<td>Image</td>--> | ||
<td>Protein E</td> | <td>Protein E</td> | ||
| − | <td> | + | <td>Bacteria-lysing protein encoded by phage Phi X 17</td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500006">BBa_K2500006</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500006">BBa_K2500006</a></td> | ||
</tr> | </tr> | ||
| Line 74: | Line 74: | ||
<!--<td>Image</td>--> | <!--<td>Image</td>--> | ||
<td>RBS<sub>eng</sub>_TlpA</td> | <td>RBS<sub>eng</sub>_TlpA</td> | ||
| − | <td> | + | <td>Temperature-dependent transcriptional repressor of p<sub>Tlpa</sub> with engineered RBS</td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500007">BBa_K2500007</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500007">BBa_K2500007</a></td> | ||
</tr> | </tr> | ||
| + | |||
<tr> | <tr> | ||
| − | <td> | + | <td>RBS<sub>eng</sub>_ProteinE</td> |
| − | <td> | + | <td>Bacteria-lysing protein encoded by phage Phi X 174 with engineered RBS</td> |
<td><a href="http://parts.igem.org/Part:BBa_K2500009">BBa_K2500009</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500009">BBa_K2500009</a></td> | ||
</tr> | </tr> | ||
| Line 117: | Line 118: | ||
<th>BioBrick</th> | <th>BioBrick</th> | ||
</tr> | </tr> | ||
| − | + | <tr> | |
| − | < | + | <!--<td>Image</td>--> |
| − | <td> | + | <td>p<sub>Const</sub>RBS<sub>eng</sub>_TlpA</td> |
| + | <td>Constitutively expressed temperature-dependent transcriptional repressor of p<sub>Tlpa</sub> with engineered RBS</td> | ||
<td><a href="http://parts.igem.org/Part:BBa_K2500008">BBa_K2500008</a></td> | <td><a href="http://parts.igem.org/Part:BBa_K2500008">BBa_K2500008</a></td> | ||
</tr> | </tr> | ||
Revision as of 08:43, 30 October 2017
Parts
Overview
We submitted in total 14 new BioBricks to the iGEM registry! You can find all parts and their design below.
Basic Parts
| Part | Description | BioBrick |
|---|---|---|
| Bacterioferritin | Heme-deletion mutant of bacterial iron storage protein functioning as an MRI contrast agent | BBa_K2500000 |
| Azurin | Redox protein originating from P. aeruginosa with anti-cancer activity | BBa_K2500001 |
| p28 | Effector domain of azurin | BBa_K2500002 |
| pTlpA | Temperature-responsive promoter TlpA optimized for slight activation above 37°C and full activation at 45 °C | BBa_K2500003 |
| TlpA | Temperature-dependent transcriptional repressor of pTlpa | BBa_K2500004 |
| RBS_TlpA | Temperature-dependent transcriptional repressor of pTlpa and synthetic RBS | BBa_K2500005 |
| Protein E | Bacteria-lysing protein encoded by phage Phi X 17 | BBa_K2500006 |
| RBSeng_TlpA | Temperature-dependent transcriptional repressor of pTlpa with engineered RBS | BBa_K2500007 |
| RBSeng_ProteinE | Bacteria-lysing protein encoded by phage Phi X 174 with engineered RBS | BBa_K2500009 |
| AND gate A | Synthetic promoter responsive to LldR and luxR | BBa_K2500010 |
| Best Basic Part: AND gate B |
Synthetic promoter responsive to LldR and luxR | BBa_K2500011 |
| AND gate C | Synthetic promoter responsive to LldR and luxR | BBa_K2500012 |
| pConst_RBS_LldP/ LldR_pConst_RBS_LuxR |
Expression cassette consisting of LuxR and LldP/LldR | BBa_K2500013 |
Composite Parts
| Part | Description | BioBrick |
|---|---|---|
| pConstRBSeng_TlpA | Constitutively expressed temperature-dependent transcriptional repressor of pTlpa with engineered RBS | BBa_K2500008 |
Design
BBa_K2500010: AND gate a
In absence of high concentrations of L-lactate, LldR inhibitor proteins bind to the binding sites O1 and O2 surrounding the pLux promoter leading to the formation of a DNA loop. The pLux promoter is sequestered and inaccessible for transcription. In design a, the distances between the intercalated promoter and the binding sites were adapted from BBa_K1847007.
Registry: BBa_K2500010
BBa_K2500011: AND gate b
In design b, each binding site was duplicated in order to achieve a potential zipper mechanism and stronger inhibition due to binding more LldR inhibitor proteins.
Registry: BBa_K2500011
BBa_K2500012: AND gate c
In design c, an artificial spacer was embedded between the pLux promoter and the O2 binding site in order to influence the looping dynamics.
Registry: BBa_K2500012
