Difference between revisions of "Team:OUC-China/Description"

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<body>
<div class="column full_size">
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<!--此处是导航-->
<h1>Description</h1>
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<div class="navbar navbar-fixed-top ouc-navbar" role="navigation">
 
+
    <ul class="nav navbar-nav">
<p>Tell us about your project, describe what moves you and why this is something important for your team.</p>
+
        <li><a href="https://2017.igem.org/Team:OUC-China" class="navbar-brand" id="ouc-logo"><img src="https://static.igem.org/mediawiki/2017/8/89/T--OUC-China--logo.jpg" width="66" height="40" /></a></li>
 
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        <li class="dropdown">
 
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            <a href="https://2017.igem.org/Team:OUC-China/Team" data-toggle="dropdown" class="dropdown-toggle ouc-nav-a">Team<span class="caret"></span></a>
<h5>What should this page contain?</h5>
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            <ul class="dropdown-menu">
<ul>
+
                <li><a href="https://2017.igem.org/Team:OUC-China/Team">Members</a></li>
<li> A clear and concise description of your project.</li>
+
                <li><a href="#">Collaborations</a></li>
<li>A detailed explanation of why your team chose to work on this particular project.</li>
+
                <li><a href="#">Attributions</a></li>
<li>References and sources to document your research.</li>
+
            </ul>
<li>Use illustrations and other visual resources to explain your project.</li>
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        </li>
</ul>
+
        <li class="dropdown">
 
+
            <a href="#" data-toggle="dropdown" class="dropdown-toggle ouc-nav-a">Project<spam class="caret"></span></a>
 
+
            <ul class="dropdown-menu">
 +
                <li><a href="#">Description</a></li>
 +
                <li><a href="#">Design</a></li>
 +
                <li><a href="#">Experiments</a></li>
 +
                <li><a href="#">Results</a></li>
 +
                <li><a href="https://2017.igem.org/Team:OUC-China/InterLab">Interlab</a></li>
 +
                <li><a href="https://2017.igem.org/Team:OUC-China/Notebook" >Notebook</a></li>
 +
            </ul>
 +
        </li>
 +
        <li class="dropdown">
 +
            <a href="#" data-toggle="dropdown" class="dropdown-toggle ouc-nav-a">Model<span class="caret"></span></a>
 +
            <ul class="dropdown-menu">
 +
                <li><a href="#">Overview</a></li>
 +
                <li><a href="#">Basic part</a></li>
 +
                <li><a href="#">Advanced part</a></li>
 +
            </ul>
 +
        </li>
 +
        <li><a href="#" class="ouc-nav-a">Parts</a></li>
 +
        <li><a href="#" class="ouc-nav-a">Safety</a></li>
 +
        <li><a href="#" class="ouc-nav-a">Human Practice</a></li>
 +
    </ul>
 
</div>
 
</div>
 +
<!--此处是导航-->
  
<div class="column full_size" >
+
<div class="container">
 +
    <div class="page-header ouc-page-header">
 +
        <h1 id="background"><strong>Description</strong></h1>
 +
    </div>
 +
   
 +
    <!--background-->
 +
    <div>
 +
    <h3 class="ouc-heading"><strong>Why we deal with this project?</strong></h3>
 +
   
 +
    <div class="row">
 +
    <div class="col-md-8">
 +
    <p style="font-size:20px;">
 +
    Algae Outbreak is one of the major marine disaster for marine life, which also threatens social economy and health of human being. The periodically occurring of algae outbreak, the out-break of <i>Enteromorpha</i>, on coastline has been a stubborn local environmental problem in ShanDong province of China.
 +
    </p>
 +
            <p style="font-size:20px;">
 +
    At the same time, we response the wave of the third worldwide biofuel, which takes alage as core to explore biofuel. Compared with traditional plant used for biofuel like corn, straw and sugarcane, alage has little lignin and more fexible cellulose, so it can be transformed into fuel easier. And we can use the giant advantage that alage won't compete land resources.
 +
    </p>
 +
    </div>
 +
    <div class="col-md-4">
 +
   
 +
    <p style="color: gray;text-align: center;">
 +
                <img src="https://static.igem.org/mediawiki/2017/e/e5/T--OUC-China--des1.jpg"><br/>
 +
                Figure 1.1 <i>Enteromorpha</i> outbreak in Qingdao<br/>
 +
                Figure 1.2 Traditional materials for cellulose fermentation<br/>
 +
                Figure 1.3 Cellulose in algae&nbsp;&nbsp;Figure 1.4 Cellulose in plant
 +
            </p>
 +
</div>
 +
    </div>
 +
   
 +
    <br/><br/>
 +
   
 +
        <div class="row">
 +
        <div class="col-md-4">
 +
        <p style="color: gray;text-align: center;">
 +
        <img src="https://static.igem.org/mediawiki/2017/0/03/T--OUC-China--des2.jpg" width="380px"/ ><br/>
 +
                    Figure 2 Sketch of cellulosome
 +
                </p>
 +
        </div>
 +
        <div class="col-md-8">
 +
        <p style="font-size:20px;">
 +
            The efficient degradation of cellulose and hemicellulose in algae waste is the key part of biological transformation. In nature, it is cellulose-decomposing microorganisms able to produce cellulose and xylanase that contribute most to cellulose and hemicellulose degradation. Among them, some anaerobion realize this procedure relying on the cellulosome expressed on their surface, which is a kind of scaffold protein complex assembled with cellulose. In this way, various constituents of enzymes can cooperate well with each other, and its proximity effect allows sufficient reaction in the same system, which empower them of efficient degradation ability.
 +
    </p>
 +
    </div>
 +
    </div>
 +
   
 +
    <br/><br/>
 +
   
 +
    <div class="row">
 +
       
 +
        <div class="col-md-8">
 +
        <p style="font-size:20px;">
 +
            However, the structure of the cellulosome itself is huge, the burden on the target bacteria is enormous, which greatly restricts the final reaction effect.<br/>
 +
                    In order to solve this problem, the enzyme-catalyzed reaction was combined and the metabolic burden was reduced in the mode of <i>S.cerevisiae</i>. We thought of using <i>E. coli</i> as the enzy-matic reaction platform of <i>S.cerevisiae</i>, using <i>E.coli</i> to express a variety of enzymes/proteins to participate in the production of <i>S.cerevisiae</i>.<br/>
 +
                    Such a co-expression platform can lighten the metabolic burden of our yeast and at the same time, ensure the synergistic effect and proximity effect between enzymes. Ultimately, our degradation efficiency get improved.
  
<h5>Advice on writing your Project Description</h5>
+
    </p>
 +
    </div>
 +
    <div class="col-md-4">
 +
        <p style="color: gray;text-align: center;">
 +
        <img src="https://static.igem.org/mediawiki/2017/7/70/T--OUC-China--des3.mp4" height="270"/><br/>
 +
                    Figure 3 Sketch of adhesion platform
 +
                </p>
 +
        </div>
 +
    </div>
 +
   
 +
    <br/><br/>
 +
   
 +
    <div class="row">
 +
        <div class="col-md-4">
 +
        mini的插图
 +
        </div>
 +
        <div class="col-md-8">
 +
        <p style="font-size:20px;">
 +
            This year,we use <i>S.cerevisiae</i>as our chassis creatures.You know that Fungal promoters often span hundreds of base pairs, nearly ten times the amount of bacterial coun-terparts.The promoters are in big size. And the same is true of the terminator. This size limits large-scale synthetic biology efforts in Yeasts. So, synthesis promoters and terminator, especially minimally sized, are critical for advancing fungal synthetic biology.The mini promoters are com-prised of short core elements that are generic and interoperable and 10 bp UAS elements that impart strong, constitutive function. These synthetic pro-moters and terminations offer several advantages over native sequences, including an easily synthe-sized short length, minimal sequence homology to native sequences, and similar or better perfor-mance characteristics than those of commonly used longer one.
 +
                   
 +
    </p>
 +
    </div>
 +
    </div>
 +
   
 +
</div>
 +
 
 +
  <br/><br/><br/><br/>
 +
    <!--background结束-->
 +
   
 +
    <!--项目介绍-->
 +
    <div>
 +
        <h3 class="ouc-heading"><strong>So what we do?</strong></h3>
 +
        <p style="font-size:20px;">
 +
            Firstly, we produced ethanol from algae waste to realize waste utilization.<br/>
 +
            Secondly, we constructed an adhesion platform between heterogeneous cells.<br/>
 +
            Thirdly, we designed and synthesized a set of concise promoters and terminators in yeast called mini system.
 +
</p>
 +
<div class="container">
 +
    <h4 class="ouc-heading"><strong>Fermentation</strong></h4>
 +
            <p style="text-align: center;"><img src="https://static.igem.org/mediawiki/2017/0/0f/T--OUC-China--fermentation.jpg" height="270"/></p>
 +
        <p style="font-size:20px;">
 +
            This year, we aim to make use of the cellobiose and xylose produced from waste algae and turn them into ethanol as algae wine, to which we add resveratrol to make it healthy and tasty.<br/>
 +
            <a href="##">See more at our Design page</a>
 +
    </p>
 +
    <br/><br/>
 +
    <h4 class="ouc-heading"><strong>Adhesion</strong></h4>
 +
            <p style="text-align: center;"><img src="https://static.igem.org/mediawiki/2017/a/a1/T--OUC-China--link.jpg" height="270"/></p>
 +
        <p style="font-size:20px;">
 +
            we novelly designed and achieved a synthetic biology platform for artificial interspecific cooperation. E. coli and S.cerevisiae are engineered to adhere to each other and form multi-cell functional unit. In this co-culture system, E. coli works as surface-display system of S. cerevisiae for realizing diverse applications of Yeast.<br>
 +
            <a href="##">See more at our Design page</a>
 +
    </p>
 +
    <br/><br/>
 +
    <h4 class="ouc-heading"><strong>Mini system</strong></h4>
 +
            <p style="text-align: center;"><img src="https://static.igem.org/mediawiki/2017/7/7e/T--OUC-China--mini.jpg" height="270"/></p>
 +
        <p style="font-size:20px;">
 +
            This year, we work on a mini system including standardized promoters and terminators with concise structure in Yeast, providing more potential for large-scale synthetic biology opera-tions.And the mini system can further improve the expression level of allogenic genes in Yeast.<br/>
 +
            <a href="##">See more at our Design page</a>
 +
    </p>
 +
</div>
 +
</div>
 +
    <!--项目介绍结束-->
 +
   
 +
    <br/><br/><br/><br/>
 +
   
 +
    <!--achivements-->
 +
    <div>
 +
        <h3 class="ouc-heading"><strong>What we have done?</strong></h3>
 +
<p style="font-size:20px;">
 +
    <span style="color: #008F75">★</span>Achievments<br/>
 +
    <a>Click here to see more achievements in Modeling</a><br/>
 +
    <a>Click here to see more achievements in Human Practice</a>
 +
</p>
 +
</div>
 +
    <!--achivements结束-->
 +
   
 +
    <!--reference-->
 +
    <div>
 +
        <h3 class="ouc-heading"><strong>Reference</strong></h3>
 +
<p style="font-size:20px;">
 +
    [1]Tanaka T, Masunari S, Ishii J, et al. Displaying non-natural, functional molecules on yeast surfaces via biotin-streptavidin interaction[J]. Journal of Biotechnology, 2010, 145(1):79-83.<br/>
 +
            [2]Park M, Jose J, Thömmes S, et al. Autodisplay of streptavidin.[J]. Enzyme & Microbial Technology, 2011, 48(4):307-311.<br/>
 +
            [3]Redden H,Alper HS,The development and characterization of synthetic minimal yeast promoters[J],Nature Communication,2015,6 : 7810<br/>
 +
            [4]Curran K A, Morse N J, Markham K A, et al. Short Synthetic Terminators for Improved Heterologous Gene Expression in Yeast[J]. Acs Synthetic Biology, 2015, 4(7):824.<br/>
 +
            [5]Fan, Li Hai, et al. "Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production." Proceedings of the National Academy of Sciences of the United States of America 109.33(2012):13260.<br/>
 +
            [6]Fan, L. H., et al. "Engineering yeast with bifunctional minicellulosome and cellodextrin pathway for co-utilization of cellulose-mixed sugars." Biotechnology for Biofuels 9.1(2016):137.<br/>
 +
            [7]孙萍, 郭丽琼, 梁景龙,等. 白藜芦醇在酿酒酵母中的组合表达[J]. 食品与发酵工业, 2013, 39(8):7-12.<br/>
 +
            [8]孙萍, 郭丽琼, 黄佳俊,等. 酿酒酵母工程菌生物合成白藜芦醇[J]. 中国食品学报, 2016, 16(3):68-74.<br/>
  
<p>
+
</p>
We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be consist, accurate and unambiguous in your achievements.
+
</div>
</p>
+
    <!--reference ending-->
 +
   
 +
   
  
<p>
 
Judges like to read your wiki and know exactly what you have achieved. This is how you should think about these sections; from the point of view of the judge evaluating you at the end of the year.
 
</p>
 
  
 
</div>
 
</div>
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 +
     
 +
       
 +
       
  
 
+
<div class="column half_size" >
+
 
+
<!--此处是置顶及赞助页-->
<h5>References</h5>
+
<a href="#top"><img class="top" src="https://static.igem.org/mediawiki/2017/b/b7/T--OUC-China--top.jpeg" width="101" height="101" /></a>
<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you thought about your project and what works inspired you.</p>
+
<div class="container-fluid ouc-reserve">
 +
    <p class="text-center">
 +
                          <br/><br/>
 +
                          Contact Us : oucigem@163.com&nbsp;&nbsp;|&nbsp;&nbsp;©2017 OUC IGEM.All Rights Reserved.&nbsp;&nbsp;|&nbsp;&nbsp;Based On Bootstrap<br/><br/>
 +
                          <img src="https://static.igem.org/mediawiki/2017/b/b4/T--OUC-China--foot1.jpeg" width="80" height="80"/>
 +
                          <img src="https://static.igem.org/mediawiki/2017/6/62/T--OUC-China--foot2.jpeg" width="80" height="80"/>
 +
                          <img src="https://static.igem.org/mediawiki/2017/e/eb/T--OUC-China--QNS.jpg" width="497" height="80"/>
 +
                          <img src="https://static.igem.org/mediawiki/2017/5/51/T--OUC-China--NSG.png" width="174" height="50"/>
 +
                          <img src="https://static.igem.org/mediawiki/2017/2/2a/T--OUC-China--ML.png" width="252" height="50"/><br/>
 +
    </p>
  
 
</div>
 
</div>
  
 +
<script type="text/javascript" src="https://2017.igem.org/Team:OUC-China/JS?action=raw&amp;ctype=text/javascript"></script>
 +
<!--此处是置顶及赞助页-->
 +
  
<div class="column half_size" >
+
</body>
<h5>Inspiration</h5>
+
<p>See how other teams have described and presented their projects: </p>
+
 
+
<ul>
+
<li><a href="https://2016.igem.org/Team:Imperial_College/Description">2016 Imperial College</a></li>
+
<li><a href="https://2016.igem.org/Team:Wageningen_UR/Description">2016 Wageningen UR</a></li>
+
<li><a href="https://2014.igem.org/Team:UC_Davis/Project_Overview"> 2014 UC Davis</a></li>
+
<li><a href="https://2014.igem.org/Team:SYSU-Software/Overview">2014 SYSU Software</a></li>
+
</ul>
+
</div>
+
 
+
 
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</html>
 
</html>

Revision as of 12:33, 11 October 2017

Description

Why we deal with this project?

Algae Outbreak is one of the major marine disaster for marine life, which also threatens social economy and health of human being. The periodically occurring of algae outbreak, the out-break of Enteromorpha, on coastline has been a stubborn local environmental problem in ShanDong province of China.

At the same time, we response the wave of the third worldwide biofuel, which takes alage as core to explore biofuel. Compared with traditional plant used for biofuel like corn, straw and sugarcane, alage has little lignin and more fexible cellulose, so it can be transformed into fuel easier. And we can use the giant advantage that alage won't compete land resources.


Figure 1.1 Enteromorpha outbreak in Qingdao
Figure 1.2 Traditional materials for cellulose fermentation
Figure 1.3 Cellulose in algae  Figure 1.4 Cellulose in plant




Figure 2 Sketch of cellulosome

The efficient degradation of cellulose and hemicellulose in algae waste is the key part of biological transformation. In nature, it is cellulose-decomposing microorganisms able to produce cellulose and xylanase that contribute most to cellulose and hemicellulose degradation. Among them, some anaerobion realize this procedure relying on the cellulosome expressed on their surface, which is a kind of scaffold protein complex assembled with cellulose. In this way, various constituents of enzymes can cooperate well with each other, and its proximity effect allows sufficient reaction in the same system, which empower them of efficient degradation ability.



However, the structure of the cellulosome itself is huge, the burden on the target bacteria is enormous, which greatly restricts the final reaction effect.
In order to solve this problem, the enzyme-catalyzed reaction was combined and the metabolic burden was reduced in the mode of S.cerevisiae. We thought of using E. coli as the enzy-matic reaction platform of S.cerevisiae, using E.coli to express a variety of enzymes/proteins to participate in the production of S.cerevisiae.
Such a co-expression platform can lighten the metabolic burden of our yeast and at the same time, ensure the synergistic effect and proximity effect between enzymes. Ultimately, our degradation efficiency get improved.


Figure 3 Sketch of adhesion platform



mini的插图

This year,we use S.cerevisiaeas our chassis creatures.You know that Fungal promoters often span hundreds of base pairs, nearly ten times the amount of bacterial coun-terparts.The promoters are in big size. And the same is true of the terminator. This size limits large-scale synthetic biology efforts in Yeasts. So, synthesis promoters and terminator, especially minimally sized, are critical for advancing fungal synthetic biology.The mini promoters are com-prised of short core elements that are generic and interoperable and 10 bp UAS elements that impart strong, constitutive function. These synthetic pro-moters and terminations offer several advantages over native sequences, including an easily synthe-sized short length, minimal sequence homology to native sequences, and similar or better perfor-mance characteristics than those of commonly used longer one.





So what we do?

Firstly, we produced ethanol from algae waste to realize waste utilization.
Secondly, we constructed an adhesion platform between heterogeneous cells.
Thirdly, we designed and synthesized a set of concise promoters and terminators in yeast called mini system.

Fermentation

This year, we aim to make use of the cellobiose and xylose produced from waste algae and turn them into ethanol as algae wine, to which we add resveratrol to make it healthy and tasty.
See more at our Design page



Adhesion

we novelly designed and achieved a synthetic biology platform for artificial interspecific cooperation. E. coli and S.cerevisiae are engineered to adhere to each other and form multi-cell functional unit. In this co-culture system, E. coli works as surface-display system of S. cerevisiae for realizing diverse applications of Yeast.
See more at our Design page



Mini system

This year, we work on a mini system including standardized promoters and terminators with concise structure in Yeast, providing more potential for large-scale synthetic biology opera-tions.And the mini system can further improve the expression level of allogenic genes in Yeast.
See more at our Design page





Reference

[1]Tanaka T, Masunari S, Ishii J, et al. Displaying non-natural, functional molecules on yeast surfaces via biotin-streptavidin interaction[J]. Journal of Biotechnology, 2010, 145(1):79-83.
[2]Park M, Jose J, Thömmes S, et al. Autodisplay of streptavidin.[J]. Enzyme & Microbial Technology, 2011, 48(4):307-311.
[3]Redden H,Alper HS,The development and characterization of synthetic minimal yeast promoters[J],Nature Communication,2015,6 : 7810
[4]Curran K A, Morse N J, Markham K A, et al. Short Synthetic Terminators for Improved Heterologous Gene Expression in Yeast[J]. Acs Synthetic Biology, 2015, 4(7):824.
[5]Fan, Li Hai, et al. "Self-surface assembly of cellulosomes with two miniscaffoldins on Saccharomyces cerevisiae for cellulosic ethanol production." Proceedings of the National Academy of Sciences of the United States of America 109.33(2012):13260.
[6]Fan, L. H., et al. "Engineering yeast with bifunctional minicellulosome and cellodextrin pathway for co-utilization of cellulose-mixed sugars." Biotechnology for Biofuels 9.1(2016):137.
[7]孙萍, 郭丽琼, 梁景龙,等. 白藜芦醇在酿酒酵母中的组合表达[J]. 食品与发酵工业, 2013, 39(8):7-12.
[8]孙萍, 郭丽琼, 黄佳俊,等. 酿酒酵母工程菌生物合成白藜芦醇[J]. 中国食品学报, 2016, 16(3):68-74.



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