Difference between revisions of "Team:Wageningen UR/Collaborations"

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                             <p>To improve our project, we collaborated with several other iGEM teams, returning the favor for them as well. These collaborations include surveys, campaigns, webinars, BioBrick testing and other laboratory partnerships. These can roughly be divided into two categories:  
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                             <p>To improve our project, we collaborated with several other iGEM teams, returning the favor for them as well. These collaborations include surveys, campaigns, webinars, BioBrick testing and other laboratory partnerships. These can roughly be divided into two categories:
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                                     <li><a href="#HP">Human Practices collaborations</a></li>
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                                    <li><a href="#WL">Wetlab collaborations</a></li>
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                                     <li><a href="#WL">Wet lab collaborations</a></li>
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<li><a href="#HP">Human Practices collaborations</a></li>
 
                                    
 
                                    
 
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                            <h2>Wetlab Collaborations</h2></div>
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                                Next to the informative collaborations listed above, we also collaborated experimentally with other iGEM teams.
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                            <h3>Biobrick testing</h3></div>
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<div class="col-xs-11">Background info</div><div class="col-xs-1"><i class="fa fa-arrow-down" aria-hidden="true"></i></div></h4></a>
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                                            Anim pariatur cliche reprehenderit, enim eiusmod high life accusamus terry richardson ad squid. 3 wolf moon officia aute, non cupidatat skateboard dolor brunch. Food truck quinoa nesciunt laborum eiusmod. Brunch 3 wolf moon tempor, sunt aliqua put a bird on it squid single-origin coffee nulla assumenda shoreditch et. Nihil anim keffiyeh helvetica, craft beer labore wes anderson cred nesciunt sapiente ea proident. Ad vegan excepteur butcher vice lomo. Leggings occaecat craft beer farm-to-table, raw denim aesthetic synth nesciunt you probably haven't heard of them accusamus labore sustainable VHS.
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                             <p>
 
                             <p>
                                 We helped other iGEM teams in improving their project by filling in surveys, covering a wide variety of fields. We filled in surveys from iGEM <a href="https://2017.igem.org/Team:BIT" target="_blank">BIT</a>, <a href="https://2017.igem.org/Team:Munich" target="_blank">Munich</a>, <a href="https://2017.igem.org/Team:Sydney_Australia" target="_blank">Sydney_Australia</a>, <a href="https://2017.igem.org/Team:Vilnius-Lithuania" target="_blank">Vilnius-Lithuania</a>, <a href="https://2017.igem.org/Team:Washington" target="_blank">Washington</a> and <a href="https://2017.igem.org/Team:Waterloo" target="_blank">Waterloo</a>. We hoped this helped their project a little step further into the right direction.
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                                 We helped other iGEM teams in improving their project by filling in surveys, covering a wide variety of fields. We filled in surveys from iGEM <a href="https://2017.igem.org/Team:BIT" target="_blank">BIT</a>, <a href="https://2017.igem.org/Team:Munich" target="_blank">Munich</a>, <a href="https://2017.igem.org/Team:Sydney_Australia" target="_blank">Sydney_Australia</a>, <a href="https://2017.igem.org/Team:Vilnius-Lithuania" target="_blank">Vilnius-Lithuania</a>, <a href="https://2017.igem.org/Team:Washington" target="_blank">Washington</a> and <a href="https://2017.igem.org/Team:Waterloo" target="_blank">Waterloo</a>.We hoped this helped their project a little step further into the right direction.
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                             <p>
                                 iGEM team <a href="https://2017.igem.org/Team:Uppsala" target="_blank">Uppsala</a> organised a series of three online webinars where five iGEM teams discuss ethical topics live on YouTube. We collaborated by participating in the Online Ethics Discussion (webinar) about &lsquo;Social responsibility&lsquo; in relation to ethics. The following topics were discussed: </p>
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                                 iGEM team <a href="https://2017.igem.org/Team:Uppsala" target="_blank">Uppsala</a> organised a series of three online webinars where five iGEM teams discuss ethical topics live on YouTube. We collaborated by participating in the Online Ethics Discussion (webinar) about ‘Social responsibility‘ in relation to ethics. The following topics were discussed:
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                                 <ol>
 
                                 <ol>
                                     <li>Responsible communication to the general public</li>
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                                     <li>Responsible communication to the general public
                                     <li>Choice of target audience</li>
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</li>
                                     <li>Responsible choice of media to reach this target audience</li>
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                                     <li>Choice of target audience
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</li>
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                                     <li>Responsible choice of media to reach this target audience
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</li>
 
                                 </ol>
 
                                 </ol>
 
                             </div>
 
                             </div>
  
                             <p>We learned that although it is more profitable to show your project in a one-sided positive way, it is more important to be honest about the goal and means of your project. In this way, the end-user can develop a fairer opinion on your product and his trust rate increases. Through consultation with experts on the technical and human aspects of your project, you can find out what matters most about your project, and adapt your communication to the problems and needs of your target audience. This results in your product to be more effective as well.</p>
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                             <p>We learned that although it is more profitable to show your project in a one-sided positive way, it is more important to be honest about the goal and means of your project. In this way, the end-user can develop a fairer opinion on your product and their trust in the study increases. Through consultation with experts on the technical and human aspects of your project, you can find out what matters most about your project, and adapt your communication to the problems and needs of your target audience. This results in a more effective end product.
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</p>
  
 
                             <p>The webinar can be watched on <a href="https://youtu.be/LHIO7Ios2uc" target="_blank">YouTube</a>.
 
                             <p>The webinar can be watched on <a href="https://youtu.be/LHIO7Ios2uc" target="_blank">YouTube</a>.
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                                                 <b>Figure 1:</b> Promotional poster of the Online Ethics Discussion of iGEM Uppsala.
 
                                                 <b>Figure 1:</b> Promotional poster of the Online Ethics Discussion of iGEM Uppsala.
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                                To get a better insight into the situation in Brazil with regard to viral diseases like Zika and Dengue, we contacted the iGEM teams from Brazil. Apart from reading literature and talking to experts in the western world, talking to locals can also be of great value.</p>
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                              To get a better insight into the situation in Brazil with regard to viral diseases like Zika and Dengue, we contacted the iGEM teams from Brazil. Apart from reading literature and talking to experts in the Western world, talking to locals can also be of great value.
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                                 Through a Skype meeting with iGEM <a href="https://2017.igem.org/Team:USP-Brazil" target="_blank"> USP-Brazil</a> we really got to know the local situation in Brazil. Especially the insight into the measures being taken by the government and the population to prevent infection by mosquito-borne diseases is a valuable addition to our project. Several points that we learned this way are, among others that the government does not put enough effort into stopping the spread of the diseases. It is advised to wear long-sleeved shirts in the evening and at night, which is the time mosquitos are most active. Furthermore, individuals should spray themselves with an anti-insect solution. Moreover, the removal of still water can help reduce the mosquito populations. However, due to rainy seasons this is nearly impossible.</p>
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                                 Through a Skype meeting with iGEM <a href="https://2017.igem.org/Team:USP-Brazil" target="_blank"> USP-Brazil</a> we really got to know the local situation in Brazil. We gained valuable insight into the measures being taken by the government and the population to prevent infection by mosquito-borne diseases. We learned that the government does not put enough effort into stopping the spread of the diseases. It is advised to wear long-sleeved shirts in the evening and at night, which is the time mosquitos are most active. Furthermore, individuals should spray themselves with an anti-insect solution. Moreover, as mosquitoes are located close to water sources (e.g. ponds and lakes), the removal of still water would aid in reducing the mosquito population. However, in the rainy seasons this is nearly impossible.
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                                 We also learned that in Brazil, you can go to the doctor for free. However, most doctors do not have the equipment to perform diagnostic tests. A diagnostic test for viral diseases that is cheap and can be used by these doctors would be beneficial, especially to test pregnant women or decide on further treatment options. </p>
 
                                 We also learned that in Brazil, you can go to the doctor for free. However, most doctors do not have the equipment to perform diagnostic tests. A diagnostic test for viral diseases that is cheap and can be used by these doctors would be beneficial, especially to test pregnant women or decide on further treatment options. </p>
 
                             <p>
 
                             <p>
                               Owing to this Skype meeting, we realized that many people are affected by these terrible diseases and everyone in Brazil knows someone who at least is, or has been infected by viral diseases like Dengue or Zika. These diseases are very painful for the patients, and also have a great impact on the people close by and society in general. </p>
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                               Due to this Skype meeting, we realized that many people are affected by these terrible diseases and everyone in Brazil knows someone who at least is, or has been, infected by viral diseases like Dengue or Zika. These diseases are very painful for the patients, and also have a great impact on the people close by and society in general.
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                             <h4>Combining our projects into something bigger</h4></div>
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                             <h4>Combining our projects into something bigger
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                                 The project of <a href="https://2017.igem.org/Team:USP-Brazil" target="_blank"> USP-Brazil</a> covers fighting mosquito-borne diseases from the inside of the mosquito. They engineer synbiotic bacteria living in the guts of mosquitos that can fight the viruses when the mosquito is infected, during the so-called paratransgenesis. One issue is, however, that this synbiotic bacteria should only start to produce the toxins in infected mosquitos. Our project can be a nice addition by combining our engineered bacteria with their toxin system of the symbiotic bacteria. The resulting fusion is then able to detect the virus with the affinity molecule on the surface, after which our downstream signalling pathway results in the activation of the symbiotic bacteria to fight the virus or kill the mosquito.
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                                 The project of <a href="https://2017.igem.org/Team:USP-Brazil" target="_blank"> USP-Brazil</a> covers fighting mosquito-borne diseases from within the mosquito. They engineer symbiotic bacteria living in the guts of mosquitoes that can fight the viruses when the mosquito is infected, during the so-called paratransgenesis. One issue is, however, that this symbiotic bacteria should only start to produce the toxins in infected mosquitos. Our project can be a nice addition by combining our engineered bacteria with their toxin system of the symbiotic bacteria. The resulting fusion is then able to detect the virus with the affinity molecule on the surface, after which our downstream signalling pathway results in the activation of the symbiotic bacteria to fight the virus or kill the mosquito.
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                             </p>
 
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                             <p>
 
                             <p>
                                 We collaborated with iGEM <a href="https://2017.igem.org/Team:Cologne-Duesseldorf" target="_blank">Cologne-Duesseldorf</a> in their postcard campaign. This is a worldwide campaign where iGEM teams designed their own postcards, which are then distributed by the organizing iGEM team all over the world. This all with the goal of promoting synthetic biology to raise public awareness. We distributed the postcard both on Campus and at the Dutch Institute for Public Health and the Environment (RIVM). This way, both students, scientists as well as children and their parents got to takes these interesting cards home.
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                                 We collaborated with iGEM <a href="https://2017.igem.org/Team:Cologne-Duesseldorf" target="_blank">Cologne-Duesseldorf</a> in their postcard campaign. This is a worldwide campaign where iGEM teams designed their own postcards, which are then distributed by the organizing iGEM team all over the world. This all with the goal of promoting synthetic biology to raise public awareness. We distributed the postcard both on Campus and at the Dutch Institute for Public Health and the Environment (RIVM). This way, both students, scientists, as well as children and their parents, got to takes these interesting cards home.
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                                 <b>Figure 2:</b> Some of the postcards we received from other iGEM teams all over the world.
 
                                 <b>Figure 2:</b> Some of the postcards we received from other iGEM teams all over the world.
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                                 The RIVM, <i>Rijksinstituut voor Volksgezondheid en Milieu</i>, is the Dutch governmental institute for public health and a safe environment. They encourage discussions about synthetic biology and the latest developments in the field. This is related to the impact of synthetic biology on their fields of specialization. Part of this is a collaboration with Dutch iGEM teams, which encompassed the following: The RIVM funded us with a grant, and encouraged us to think about the safety aspects of our project and device. We, on the other hand, encouraged the public during the &ldquo;Kennisparade&rdquo; to do the same. On this day, the RIVM opened their doors to the general public, in particular children, to teach them about science. We informed the public about safe genetic modification and the “crafting with DNA“ part of the day. Communication was maintained with RIVM to track the progress of our project. You can check the result of the biosafety project on our <a href="https://2017.igem.org/Team:Wageningen_UR/HP/Silver" target="_blank">Safety & Ethics page</a>.  
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                                 The <a href="http://www.rivm.nl/en" target="_blank">RIVM,</a> <i>Rijksinstituut voor Volksgezondheid en Milieu</i>, is the Dutch National Institute for Public Health and the Environment. They encourage discussions about synthetic biology and the latest developments in the field. This is related to the impact of synthetic biology on their fields of specialization. Part of this is a collaboration with Dutch iGEM teams with the potential to obtain funding. We wrote a proposal entitled <mark>‘...’</mark> that explained …  This was selected among different candidates and rewarded with a grant of €3000.  The RIVM encouraged us to think about the safety aspects of our project and device. We, on the other hand, encouraged the public during the “Kennisparade” to do the same. On this day, the RIVM opened their doors to the general public, in particular children, to teach them about science. We informed the public about safe genetic modification and “crafting with DNA”. Communication was maintained with RIVM to track the progress of our project. You can check the result of the biosafety project on our <a href="https://2017.igem.org/Team:Wageningen_UR/HP/Silver" target="_blank">Safety & Ethics page</a>.  
 
 
 
 
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                                 The <a href="https://www.rathenau.nl/en" target="_blank">Rathenau Institute</a> is an organization aiming to pinpoint and solve today's questions on science, technology, and society. It also has an active role in informing politicians and society on these problems and possible solutions. An important part of their portfolio is synthetic biology. The Rathenau Institute collaborated with all Dutch iGEM teams for their &ldquo;Guide to Integrated Human Practices&rdquo; workshop in The Hague to share their expertise.</p>
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                                 The <a href="https://www.rathenau.nl/en" target="_blank">Rathenau Institute</a> is an organization aiming to pinpoint and solve today's questions on science, technology, and society. It also has an active role in informing politicians and society on these problems and possible solutions. An important part of their portfolio is synthetic biology. The Rathenau Institute collaborated with all Dutch iGEM teams for their “Guide to Integrated Human Practices” workshop in The Hague to share their expertise.
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                                       <p>The workshop consisted of several parts. First, the &ldquo;speeddates&rdquo; with experts on several human practices-related fields. Each iGEM team got to practice presenting their case to these experts, followed by a short discussion and a round of questions. We got some very interesting feedback.</p>
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                                       <p>The workshop consisted of several parts. First, the “speed dates” with experts on several human practices-related fields. Each iGEM team got to practice presenting their case to these experts, followed by a short discussion and a round of questions. We got some very interesting feedback.</p>
 
                              
 
                              
<p>For example, experts advised us to get into contact with end-users, as well as NGOs, and to take advantage of the expertise present at the Wageningen University. They emphasized that, in order for a cheap and new diagnostic to be developed, it has to be both novel and successful. A good engagement will be the factor for success.    
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<p>For example, experts advised us to get into contact with end-users, as well as NGOs, and to take advantage of the expertise present at the Wageningen University. They emphasized that in order for a cheap and new diagnostic to be developed, it has to be both novel and successful. A good engagement will be the factor for success. Wieke Betten, from the Athena Institute, said it is important for us to specify the disease we are tackling, and which population is affected the most. Other experts agreed that a clear, coherent and closed idea is needed for people to understand the aim of the project. In this way, we can combine both specificity and modularity of the device.
                         
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</p>
Wieke Betten, from the Athena Institute, said it is important for us to specify the disease we are tackling, and which population is affected the most. Other experts agreed that a clear, coherent and closed idea is needed for people to understand the aim of the project. In this way, we can combine both specificity and modularity of the device. </p>
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<p>After these speed dates we got an introduction to the <i><a href="https://live.flatland.agency/12290417/rathenau-igem/" target="_blank">iGEMers Guide to The Future</a></i> tool, developed by the Rathenau Institute. This very nice tool has exercises to facilitate human practices research for iGEM teams. For example, it contains guidelines for stakeholder brainstorming sessions, getting into contact with possible end-users and how to format techno-moral analysis of your synbio project. We applied the principles of The Guide to e.g. our
 
<p>After these speed dates we got an introduction to the <i><a href="https://live.flatland.agency/12290417/rathenau-igem/" target="_blank">iGEMers Guide to The Future</a></i> tool, developed by the Rathenau Institute. This very nice tool has exercises to facilitate human practices research for iGEM teams. For example, it contains guidelines for stakeholder brainstorming sessions, getting into contact with possible end-users and how to format techno-moral analysis of your synbio project. We applied the principles of The Guide to e.g. our
 
                                 <a href="https://2017.igem.org/Team:Wageningen_UR/HP/Silver" target="_blank">Biosafety analysis</a> and our
 
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Revision as of 17:06, 22 October 2017

Collaborations

To improve our project, we collaborated with several other iGEM teams, returning the favor for them as well. These collaborations include surveys, campaigns, webinars, BioBrick testing and other laboratory partnerships. These can roughly be divided into two categories:

Wetlab Collaborations

Next to the informative collaborations listed above, we also collaborated experimentally with other iGEM teams.

Biobrick testing

Anim pariatur cliche reprehenderit, enim eiusmod high life accusamus terry richardson ad squid. 3 wolf moon officia aute, non cupidatat skateboard dolor brunch. Food truck quinoa nesciunt laborum eiusmod. Brunch 3 wolf moon tempor, sunt aliqua put a bird on it squid single-origin coffee nulla assumenda shoreditch et. Nihil anim keffiyeh helvetica, craft beer labore wes anderson cred nesciunt sapiente ea proident. Ad vegan excepteur butcher vice lomo. Leggings occaecat craft beer farm-to-table, raw denim aesthetic synth nesciunt you probably haven't heard of them accusamus labore sustainable VHS.

Human Practices Collaborations

Surveys

We helped other iGEM teams in improving their project by filling in surveys, covering a wide variety of fields. We filled in surveys from iGEM BIT, Munich, Sydney_Australia, Vilnius-Lithuania, Washington and Waterloo.We hoped this helped their project a little step further into the right direction.

Ethics webinar

iGEM team Uppsala organised a series of three online webinars where five iGEM teams discuss ethical topics live on YouTube. We collaborated by participating in the Online Ethics Discussion (webinar) about ‘Social responsibility‘ in relation to ethics. The following topics were discussed:

  1. Responsible communication to the general public
  2. Choice of target audience
  3. Responsible choice of media to reach this target audience

We learned that although it is more profitable to show your project in a one-sided positive way, it is more important to be honest about the goal and means of your project. In this way, the end-user can develop a fairer opinion on your product and their trust in the study increases. Through consultation with experts on the technical and human aspects of your project, you can find out what matters most about your project, and adapt your communication to the problems and needs of your target audience. This results in a more effective end product.

The webinar can be watched on YouTube.

Figure 1: Promotional poster of the Online Ethics Discussion of iGEM Uppsala.

Collaborating with iGEM Brazil

To get a better insight into the situation in Brazil with regard to viral diseases like Zika and Dengue, we contacted the iGEM teams from Brazil. Apart from reading literature and talking to experts in the Western world, talking to locals can also be of great value.

Local insights

Through a Skype meeting with iGEM USP-Brazil we really got to know the local situation in Brazil. We gained valuable insight into the measures being taken by the government and the population to prevent infection by mosquito-borne diseases. We learned that the government does not put enough effort into stopping the spread of the diseases. It is advised to wear long-sleeved shirts in the evening and at night, which is the time mosquitos are most active. Furthermore, individuals should spray themselves with an anti-insect solution. Moreover, as mosquitoes are located close to water sources (e.g. ponds and lakes), the removal of still water would aid in reducing the mosquito population. However, in the rainy seasons this is nearly impossible.

We also learned that in Brazil, you can go to the doctor for free. However, most doctors do not have the equipment to perform diagnostic tests. A diagnostic test for viral diseases that is cheap and can be used by these doctors would be beneficial, especially to test pregnant women or decide on further treatment options.

Due to this Skype meeting, we realized that many people are affected by these terrible diseases and everyone in Brazil knows someone who at least is, or has been, infected by viral diseases like Dengue or Zika. These diseases are very painful for the patients, and also have a great impact on the people close by and society in general.

Combining our projects into something bigger

The project of USP-Brazil covers fighting mosquito-borne diseases from within the mosquito. They engineer symbiotic bacteria living in the guts of mosquitoes that can fight the viruses when the mosquito is infected, during the so-called paratransgenesis. One issue is, however, that this symbiotic bacteria should only start to produce the toxins in infected mosquitos. Our project can be a nice addition by combining our engineered bacteria with their toxin system of the symbiotic bacteria. The resulting fusion is then able to detect the virus with the affinity molecule on the surface, after which our downstream signalling pathway results in the activation of the symbiotic bacteria to fight the virus or kill the mosquito.

Postcard campaign

We collaborated with iGEM Cologne-Duesseldorf in their postcard campaign. This is a worldwide campaign where iGEM teams designed their own postcards, which are then distributed by the organizing iGEM team all over the world. This all with the goal of promoting synthetic biology to raise public awareness. We distributed the postcard both on Campus and at the Dutch Institute for Public Health and the Environment (RIVM). This way, both students, scientists, as well as children and their parents, got to takes these interesting cards home.

Figure 2: Some of the postcards we received from other iGEM teams all over the world.

RIVM

The RIVM, Rijksinstituut voor Volksgezondheid en Milieu, is the Dutch National Institute for Public Health and the Environment. They encourage discussions about synthetic biology and the latest developments in the field. This is related to the impact of synthetic biology on their fields of specialization. Part of this is a collaboration with Dutch iGEM teams with the potential to obtain funding. We wrote a proposal entitled ‘...’ that explained … This was selected among different candidates and rewarded with a grant of €3000. The RIVM encouraged us to think about the safety aspects of our project and device. We, on the other hand, encouraged the public during the “Kennisparade” to do the same. On this day, the RIVM opened their doors to the general public, in particular children, to teach them about science. We informed the public about safe genetic modification and “crafting with DNA”. Communication was maintained with RIVM to track the progress of our project. You can check the result of the biosafety project on our Safety & Ethics page.

Figure 3: Our stand at the RIVM Kennisparade.

Rathenau Institute

The Rathenau Institute is an organization aiming to pinpoint and solve today's questions on science, technology, and society. It also has an active role in informing politicians and society on these problems and possible solutions. An important part of their portfolio is synthetic biology. The Rathenau Institute collaborated with all Dutch iGEM teams for their “Guide to Integrated Human Practices” workshop in The Hague to share their expertise.

The workshop consisted of several parts. First, the “speed dates” with experts on several human practices-related fields. Each iGEM team got to practice presenting their case to these experts, followed by a short discussion and a round of questions. We got some very interesting feedback.

For example, experts advised us to get into contact with end-users, as well as NGOs, and to take advantage of the expertise present at the Wageningen University. They emphasized that in order for a cheap and new diagnostic to be developed, it has to be both novel and successful. A good engagement will be the factor for success. Wieke Betten, from the Athena Institute, said it is important for us to specify the disease we are tackling, and which population is affected the most. Other experts agreed that a clear, coherent and closed idea is needed for people to understand the aim of the project. In this way, we can combine both specificity and modularity of the device.

After these speed dates we got an introduction to the iGEMers Guide to The Future tool, developed by the Rathenau Institute. This very nice tool has exercises to facilitate human practices research for iGEM teams. For example, it contains guidelines for stakeholder brainstorming sessions, getting into contact with possible end-users and how to format techno-moral analysis of your synbio project. We applied the principles of The Guide to e.g. our Biosafety analysis and our future perspective analysis.

Figure 4: During the Guide to Integrated Human Practices we talked to many experts.