Difference between revisions of "Team:Berlin diagnostX/Experiments"

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<div class="abstand_navbar headimage" id="background_description_head"> <h1 class="text-center head_us head-light">Experiments</h1> </div>
 
<div class="abstand_navbar headimage" id="background_description_head"> <h1 class="text-center head_us head-light">Experiments</h1> </div>
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<div class="container abstand_navbar" id="inhalt">
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    <div class="row" id="button_row">
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        <div class="col-4 text-center"><a href="#" type="button" class="btn btn-primary igem_but btn-lg" id="01">Project Management</a></div>
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        <div class="col-4 text-center"><a href="#" type="button" class="btn btn-primary igem_but btn-lg" id="02">Experiments – Overview</a></div>
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        <div class="col-4 text-center"><a href="#" type="button" class="btn btn-primary igem_but btn-lg" id="03">Protocols</a></div>
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<div id="projectman" style="display: none;">
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            <h3 class="text-center igem_blue mt-4"><strong>Project Management</strong></h3>
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        </div>
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    </div>
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    <div class="row mt-3">
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        <div class="col-6">
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            <h5 class="text-left igem_blue">The Tapeworm <em>Taenia solium</em> </h5>
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            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
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        </div>
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        <div class="col-6">
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            <img class="img-fluid" src="images/kitten550x400.jpeg">
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            <img class="img-fluid" src="images/kitten550x400.jpeg">
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        <div class="col-6">
 +
            <h5 class="text-left igem_blue">The Tapeworm <em>Taenia solium</em> </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
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            <h3 class="text-center igem_blue mt-4"><strong>The Idea</strong></h3>
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        </div>
 +
    </div>
 +
    <div class="row">
 +
        <div class="col-6">
 +
            <h5 class="text-left igem_blue pb-1">The Tapeworm <em>Taenia solium</em> </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
        </div>
 +
        <div class="col-6">
 +
            <p class="text-justify">The test will be based on a newly developed method called toehold switch sensors. This method has already been successfully applied to the diagnosis of the Zika virus [3]. We are therefore convinced that toehold switch sensors will also be useful in detecting T. solium.
 +
            In order to develop our test, we first need to achieve two things:
 +
            The test will be based on a newly developed method called toehold switch sensors. This method has already been successfully applied to the diagnosis of the Zika virus [3]. We are therefore convinced that toehold switch sensors will also be useful in detecting T. solium.
 +
            In order to develop our test, we first need to achieve two things:
 +
            </p>
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        </div>
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    </div>
 +
    <div class="row">
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        <div class="col-12">
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            <p class="summarybox p-4"><strong>Summary</strong>: Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum.</p>
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            <h3 class="text-center igem_blue mt-4"><strong>The Experiments</strong></h3>
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        </div>
 +
    </div>
 +
    <div class="row">
 +
        <div class="col-6">
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            <h5 class="text-left igem_blue pb-1">Production of Toehold Switch Sensors </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
        </div>
 +
        <div class="col-6">
 +
            <h5 class="text-left igem_blue pb-1">Toehold Switch Sensor Test</h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
        </div>
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        <div class="row large_image_element mt-4">
 +
            <div class="col-12">
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                <img src="./images/toeholdswitch_easy.png" class="img-fluid">
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            <h3 class="text-center igem_blue mt-4"><strong>Application</strong></h3>
 +
            <h5 class="igem_blue pb-1">Überschrift</h5>
 +
            <p class="text-justify">The synthetic biology experiments described here are particularly important for participation in the iGEM competition. Simultaneously, a second team will work on the recovery of T. solium-RNA from patient stool samples in order to make our test applicable for medical purposes. We are currently forming the necessary partnerships for this goal: A working group in Nairobi has already committed to providing us with relevant material. However, these experiments will be conducted in a properly equipped laboratory, independent from the previously described experiments.</p>
 +
        </div>
 +
    </div>
 +
</div>
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</div>   
 +
   
 +
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         <div class="col-6">
 
         <div class="col-6">
 
             <h5 class="text-left igem_blue pb-1">DNA Clean Up (via column & gel extraction) </h5>
 
             <h5 class="text-left igem_blue pb-1">DNA Clean Up (via column & gel extraction) </h5>
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             <h5 class="text-left igem_blue"> CFE on membrane trials (BSA vs Whatman membrane) </strong></h5>
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             <h5 class="text-left igem_blue"><strong> CFE on membrane trials (BSA vs Whatman membrane) </strong></h5>
 
             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
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             <h5 class="text-left igem_blue">Optimizing CFE</strong> </h5>
+
             <h5 class="text-left igem_blue"><strong>Optimizing CFE</strong> </h5>
 
             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
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             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
             <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 
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                 <img src="https://static.igem.org/mediawiki/2017/4/4f/T--Berlin_diagnostX--toehold_easy.png" class="img-fluid">
 
                 <img src="https://static.igem.org/mediawiki/2017/4/4f/T--Berlin_diagnostX--toehold_easy.png" class="img-fluid">
 
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        <div class="col-12">
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            <h3 class="text-center igem_blue mt-4"><strong>The Idea</strong></h3>
 +
        </div>
 +
    </div>
 +
    <div class="row">
 +
        <div class="col-6">
 +
            <h5 class="text-left igem_blue pb-1">The Tapeworm <em>Taenia solium</em> </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
        </div>
 +
        <div class="col-6">
 +
            <p class="text-justify">The test will be based on a newly developed method called toehold switch sensors. This method has already been successfully applied to the diagnosis of the Zika virus [3]. We are therefore convinced that toehold switch sensors will also be useful in detecting T. solium.
 +
            In order to develop our test, we first need to achieve two things:
 +
            The test will be based on a newly developed method called toehold switch sensors. This method has already been successfully applied to the diagnosis of the Zika virus [3]. We are therefore convinced that toehold switch sensors will also be useful in detecting T. solium.
 +
            In order to develop our test, we first need to achieve two things:
 +
            </p>
 +
        </div>
 +
    </div>
 +
    <div class="row">
 +
        <div class="col-12">
 +
            <p class="summarybox p-4"><strong>Summary</strong>: Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum.</p>
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      <div class="row">
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            <h3 class="text-center igem_blue mt-4"><strong>The Experiments</strong></h3>
 +
        </div>
 +
    </div>
 +
    <div class="row">
 +
        <div class="col-6">
 +
            <h5 class="text-left igem_blue pb-1">Production of Toehold Switch Sensors </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
        </div>
 +
        <div class="col-6">
 +
            <h5 class="text-left igem_blue pb-1">Toehold Switch Sensor Test</h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
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 +
      </div>
 +
    <div class="row large_image_element mt-4">
 +
            <div class="col-12">
 +
                <img src="https://static.igem.org/mediawiki/2017/4/4f/T--Berlin_diagnostX--toehold_easy.png" class="img-fluid">
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            <h3 class="text-center igem_blue mt-4"><strong>Application</strong></h3>
 +
            <h5 class="igem_blue pb-1">Überschrift</h5>
 +
            <p class="text-justify">The synthetic biology experiments described here are particularly important for participation in the iGEM competition. Simultaneously, a second team will work on the recovery of T. solium-RNA from patient stool samples in order to make our test applicable for medical purposes. We are currently forming the necessary partnerships for this goal: A working group in Nairobi has already committed to providing us with relevant material. However, these experiments will be conducted in a properly equipped laboratory, independent from the previously described experiments.</p>
 +
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<div id="protocols" style="display: none;">
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            <h3 class="text-center igem_blue mt-4"><strong>Protocols</strong></h3>
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    </div>
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    <div class="row mt-3">
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        <div class="col-6">
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            <h5 class="text-left igem_blue">The Tapeworm <em>Taenia solium</em> </h5>
 +
            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
 +
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            <h5 class="text-left igem_blue">The Tapeworm <em>Taenia solium</em> </h5>
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            <p class="text-justify"><em>Taenia solium</em>, otherwise known as pork tapeworm, is a parasite with potentially serious health effects in humans. It infects millions of people worldwide, leading to severe brain diseases, blindness, epilepsy, and death. Countries where where pork production and consumption are coupled with poor hygiene are the worst affected, including large areas of Latin America, Sub-Saharan Africa, and South- and East-Asia, where over 14% of people have experienced an infection at some point <a class="igem_blue" href="#"> [1]</a>. However, a clear picture of how many people are currently infected by T. solium does not exist, due to the current difficulty in making a diagnosis. </p>
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Revision as of 22:34, 30 October 2017

Experiments