Difference between revisions of "Team:CLSB-UK/Software"

(Prototype team page)
 
 
(22 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
{{CLSB-UK}}
 
{{CLSB-UK}}
−
<html>
+
{{CLSB-UK Header}}
 +
{{CLSB-UK Jumbotron|https://static.igem.org/mediawiki/2017/2/2b/T--CLSB-UK--software_alexadevday.jpg|Software|Also in charge of making sure the wiki's finished - TODO: update with better caption}}
 +
{{CLSB-UK Content Start}}
 +
= Software =
  
 +
Throughout our project we created several software tools to make our work faster and easier.
  
−
<div class="column full_size judges-will-not-evaluate">
+
== [[Team:CLSB-UK/Software/SynBioBot|Synthetic Biology Bot]] ==
−
<h3>★  ALERT! </h3>
+
−
<p>This page is used by the judges to evaluate your team for the <a href="https://2017.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2017.igem.org/Judging/Awards"> award listed above</a>. </p>
+
−
<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2017.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
+
−
</div>
+
−
<div class="clear"></div>
+
  
 +
Synthetic Biology Bot is a free, open-source app that runs on Amazon Alexa and Google Assistant enabled devices. It helps scientists look up parts from the registry, reads step-by-step protocol instructions and can lookup other iGEM teams.
  
−
<div class="column half_size">
+
== [[Team:CLSB-UK/Software/ToeholdSwitchTools|Toehold Switch Tools]] ==
−
<h1>Software</h1>
+
−
<h3>Best Software Tool Special Prize</h3>
+
−
<p>Regardless of the topic, iGEM projects often create or adapt computational tools to move the project forward. Because they are born out of a direct practical need, these software tools (or new computational methods) can be surprisingly useful for other teams. Without necessarily being big or complex, they can make the crucial difference to a project's success. This award tries to find and honor such "nuggets" of computational work.
+
  
 +
A simple web-based tool that can create a toehold switch candidate for a given strand of miRNA, automating the predetermined regions.
  
−
<br><br>
+
== [[Team:CLSB-UK/Hardware/Interpreter|Fluorometer and Densitometer Interpreter]] ==
−
To compete for the <a href="https://2017.igem.org/Judging/Awards">Best Software Tool prize</a>, please describe your work on this page and also fill out the description on the <a href="https://2017.igem.org/Judging/Judging_Form">judging form</a>.
+
−
<br><br>
+
−
You must also delete the message box on the top of this page to be eligible for this prize.
+
−
</p>
+
  
 +
Created as part of our hardware project, the interpreter runs in the browser to communicate with and process the results of our cheap and portable combined fluorometer and densitometer.
  
−
</div>
+
== [[Team:CLSB-UK/Model|Modeling]] ==
  
−
<div class="column half_size">
+
We built several models in MATLAB and also created interactive JavaScript-based versions of the mass-action kinetics model for our design team and a cost model for the human practices team. They also serve as great tools in explaining the model to other people.
−
<h5> Inspiration </h5>
+
−
<p>
+
−
Here are a few examples from previous teams:
+
−
</p>
+
−
<ul>
+
−
<li><a href="https://2016.igem.org/Team:BostonU_HW">2016 BostonU HW</a></li>
+
−
<li><a href="https://2016.igem.org/Team:Valencia_UPV">2016 Valencia UPV</a></li>
+
−
<li><a href="https://2014.igem.org/Team:Heidelberg/Software">2014 Heidelberg</a></li>
+
−
<li><a href="https://2014.igem.org/Team:Aachen/Project/Measurement_Device#Software">2014 Aachen</a></li>
+
−
</ul>
+
  
−
</div>
+
{{CLSB-UK Content End}}
−
 
+
{{CLSB-UK Footer}}
−
</html>
+

Latest revision as of 23:39, 1 November 2017

Software

Also in charge of making sure the wiki's finished - TODO: update with better caption

Software

Throughout our project we created several software tools to make our work faster and easier.

Synthetic Biology Bot

Synthetic Biology Bot is a free, open-source app that runs on Amazon Alexa and Google Assistant enabled devices. It helps scientists look up parts from the registry, reads step-by-step protocol instructions and can lookup other iGEM teams.

Toehold Switch Tools

A simple web-based tool that can create a toehold switch candidate for a given strand of miRNA, automating the predetermined regions.

Fluorometer and Densitometer Interpreter

Created as part of our hardware project, the interpreter runs in the browser to communicate with and process the results of our cheap and portable combined fluorometer and densitometer.

Modeling

We built several models in MATLAB and also created interactive JavaScript-based versions of the mass-action kinetics model for our design team and a cost model for the human practices team. They also serve as great tools in explaining the model to other people.