Difference between revisions of "Team:TokyoTech/Collaborations"

Line 7: Line 7:
 
<meta name="viewport" content="width=device-width, initial-scale=1">
 
<meta name="viewport" content="width=device-width, initial-scale=1">
 
<link rel="stylesheet" href="main.css">
 
<link rel="stylesheet" href="main.css">
−
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Poppins">
 
 
<style>
 
<style>
−
body,h1,h2,h3,h4,h5 {font-family: "Poppins", sans-serif}
+
body,h1,h2,h3,h4,h5 {font-family: "Arial", sans-serif}
 
body {font-size:16px;}
 
body {font-size:16px;}
 
.w3-half img{margin-bottom:-6px;margin-top:16px;opacity:0.8;cursor:pointer}
 
.w3-half img{margin-bottom:-6px;margin-top:16px;opacity:0.8;cursor:pointer}
Line 15: Line 14:
 
</style>
 
</style>
 
<body>
 
<body>
 +
 +
<div id="loader-bg">
 +
  <div id="loader">
 +
    <div class="photo-show">
 +
    <img src="https://static.igem.org/mediawiki/2017/f/f4/T--TokyoTech--load_1.png" width="600">
 +
    <img src="https://static.igem.org/mediawiki/2017/4/43/T--TokyoTech--load_2.png" width="600">
 +
    </div>
 +
  </div>
 +
</div>
  
 
<!-- Sidebar/menu -->
 
<!-- Sidebar/menu -->
 
<nav class="w3-sidebar w3-red w3-collapse w3-top w3-large w3-padding" style="z-index:3;width:300px;font-weight:bold;" id="mySidebar"><br>
 
<nav class="w3-sidebar w3-red w3-collapse w3-top w3-large w3-padding" style="z-index:3;width:300px;font-weight:bold;" id="mySidebar"><br>
 
   <a href="javascript:void(0)" onclick="w3_close()" class="w3-button w3-hide-large w3-display-topleft" style="width:100%;font-size:20px">Close Menu</a>
 
   <a href="javascript:void(0)" onclick="w3_close()" class="w3-button w3-hide-large w3-display-topleft" style="width:100%;font-size:20px">Close Menu</a>
−
   <div class="w3-container" style="margin-top: 20px;margin-bottom: 25px">
+
   <div class="w3-container" style="margin-top: 20px;margin-bottom: 25px" id="wrap">
 
     <img src="https://static.igem.org/mediawiki/2017/a/a8/T--TokyoTech--logo_white_bright_10211603.png" style="width: 100%">
 
     <img src="https://static.igem.org/mediawiki/2017/a/a8/T--TokyoTech--logo_white_bright_10211603.png" style="width: 100%">
 
   </div>
 
   </div>
  
−
   <div style="padding-top: 15px; padding-left: 25px;">
+
   <div style="padding-top: 15px; padding-left: 25px; id="wrap">
  
 
   <div id="contents" style="z-index: 10">
 
   <div id="contents" style="z-index: 10">
Line 50: Line 58:
 
     <label for="vmcb-d"><a>Experiment</a></label>
 
     <label for="vmcb-d"><a>Experiment</a></label>
 
     <ul>
 
     <ul>
−
         <li style="padding-bottom: 10px; padding-top: 10px">
+
 
 +
         <li>
 
         <input type="checkbox" id="vmcb-d1" />
 
         <input type="checkbox" id="vmcb-d1" />
−
          <label for="vmcb-d1"><a style="text-align: center;">Bacteria <br>to Human Cells ▼</a></label>
+
        <label for="vmcb-d1"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/Overview" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white" style="text-align: center;">Overview</a></label>
 +
        </li>
 +
 
 +
        <li style="padding-bottom: 10px; padding-top: 5px">
 +
        <input type="checkbox" id="vmcb-d2" />
 +
          <label for="vmcb-d2"><a style="text-align: center;">Bacteria to <br>Human Cells ▼</a></label>
 
             <ul>
 
             <ul>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraI_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">TraI Assay</a></li>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraI_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">TraI Assay</a></li>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraI_Improvement" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">TraI Impovement <br>Assay</a></li>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraI_Improvement" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">TraI Impovement <br>Assay</a></li>
−
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraR_Reporter_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white" >TraR Reporter <br> Assay</a></li>
+
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/TraR_Reporter_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white" >TraR Reporter <br>Assay</a></li>
−
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/Transcriptome_Analysis" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Transcriptome <br> Analysis</a></li>
+
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/Transcriptome_Analysis" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Transcriptome <br>Analysis</a></li>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/Chimeric_Transcription_Factor" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Chimeric <br> Transcription <br> Factor Assay</a></li>
 
               <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Experiment/Chimeric_Transcription_Factor" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Chimeric <br> Transcription <br> Factor Assay</a></li>
 
             </ul>
 
             </ul>
Line 63: Line 77:
  
 
       <li style="padding-bottom: 10px">
 
       <li style="padding-bottom: 10px">
−
       <input type="checkbox" id="vmcb-d2" />
+
       <input type="checkbox" id="vmcb-d3" />
−
     <label for="vmcb-d2"><a style="text-align: center;">Human Cells to Bacteria ▼</a></label>
+
     <label for="vmcb-d3"><a style="text-align: center;">Human Cells to <br>Bacteria ▼</a></label>
 
         <ul>
 
         <ul>
 
           <li><a href="https://2017.igem.org/Team:TokyoTech/Experiment/AHK4_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">AHK4 Assay</a></li>
 
           <li><a href="https://2017.igem.org/Team:TokyoTech/Experiment/AHK4_Assay" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">AHK4 Assay</a></li>
Line 70: Line 84:
 
         </li>
 
         </li>
  
−
         <li style="padding-bottom: 10px">
+
         <li>
−
         <input type="checkbox" id="vmcb-d3" />
+
         <input type="checkbox" id="vmcb-d4" />
−
     <label for="vmcb-d3"><a href="https://2017.igem.org/Team:TokyoTech/InterLab" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white" style="text-align: center;">InterLab</a></label>
+
     <label for="vmcb-d4"><a href="https://2017.igem.org/Team:TokyoTech/InterLab" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white" style="text-align: center;">InterLab</a></label>
 
         </li>
 
         </li>
 
     </ul>
 
     </ul>
Line 89: Line 103:
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Overview</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Overview</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP/Silver" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Silver</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP/Silver" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Silver</a></li>
−
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP/Gold_Integrated" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Integrated <br> Human Practice</a></li>
+
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/HP/Gold_Integrated" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Gold (Integrated)</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Demonstrate" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Demonstrate</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Demonstrate" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Demonstrate</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Collaborations" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Collaborations</a></li>
 
     <li style="text-align: center;"><a href="https://2017.igem.org/Team:TokyoTech/Collaborations" onclick="w3_close()" class="w3-bar-item w3-button w3-hover-white">Collaborations</a></li>
Line 109: Line 123:
 
   </div>
 
   </div>
 
</nav>
 
</nav>
 +
 
<!-- Top menu on small screens -->
 
<!-- Top menu on small screens -->
 
<header class="w3-container w3-top w3-hide-large w3-red w3-xlarge w3-padding">
 
<header class="w3-container w3-top w3-hide-large w3-red w3-xlarge w3-padding">

Revision as of 12:16, 1 November 2017

<!DOCTYPE html> Coli Sapiens

iGEM Tokyo Tech

Collaborations

1. Technical collaboration with Team IONIS-Paris

We met up with Nicolas, a member of Team IONIS-Paris at TokyoTech in July. In the meetup, he gave us a presentation about the project. In the presentation, it turned out that they need a temperture-selective promoter which we used last year, so we decided to offer them a Biobrick part (BBa_K1949001: Pcold-gfp).

Instead of offering a BioBrick part, they, Team IONIS-Paris gave us advice about modelling. In particular, we wanted to know folding speeds of proteins that appear in our project. The modelling section in Team IONIS-Paris is familiar with PHYRE2 (Protein Fold Recognition Server), and they calculated all the folding speeds on it and gave us the results. The consultation was really helpful for us to predict the production rate of target protein and drew on the advice when we set parameters in our model.

Fig 1-1. Meetup with IONIS-Paris
Fig 1-2. Meetup with IONIS-Paris

2. Mentoring Team ASIJ Tokyo

Our team mentored Team ASIJ Tokyo when we met up on September 23rd. Team ASIJ Tokyo is a very young team and it's the second time to participate in iGEM competition. Most of the team members are not familiar with scientific research and iGEM culture, so we gave them advice about the modeling of the data and the improvement of their qualitative analysis, as well as guidance for how to best represent their project motivations and research.

Fig 2. Meetup with Team ASIJ Tokyo

3. Meetup (Practice Session) at Boston University

On November 8th, 2017, our team hosts a meetup in Boston University. We are looking forward to sharing ideas with other iGEM teams. Each team will have the opportunity to present their projects and exchange their ideas in detail with other iGEM teams and faculty advisors right before the Giant Jamboree.

Fig 3. Meetup with Team KAIT Japan

Hajime Fujita: All Rights Reserved