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− | <p> | + | <p>The <a href="https://2017.igem.org/Team:Freiburg/Design">CARTEL<sup>TM</sup> AND gate</a> is a genetic circuit which we have designed to be integrated in T cells, for a controlled expression of one <a href="https://2017.igem.org/Team:Freiburg/CAR">output</a>, the chimeric antigen receptor, in response to two inputs that are only found in a tumor microenvironment. The AND gate is constructed of two promoters interconnected through a protein, (HIF1A), to integrate two inputs into one output. Two alternative AND Gates were designed as follows: high VEGF concentrations and hypoxic conditions or alternatively low pH and hypoxic conditions.</p> |
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+ | <p>As a proof of concept we characterized all the promoters separately in mammalian cell lines. | ||
+ | We therefore generated stable cell lines, containing the promoters for the inputs driving a reporter protein. Single and multiple enhancer elements for the inputs: <a href="https://2017.igem.org/Team:Freiburg/Design">pH, VEGF and hypoxia</a> were designed and integrated in <a href="https://2017.igem.org/Team:Freiburg/Cell_culture">Jurkat and HEK293T cells</a>.<br> . | ||
+ | We could show an induced induced activity of the hypoxia response element promoter and the cAMP response element promoter in Jurkat cells (Fig. 1) <a href="https://2017.igem.org/Team:Freiburg/Cell_culture">Flow cytometry</a> of Jurkat <a href="https://2017.igem.org/Team:Freiburg/Results">4xHRE-pTal:eCFP</a> cells showed an increase of eCFP positive cells with rising concentration of CoCl2 (Fig. 1a). In addition we could show an induced activity of the cAMP response element promoter in Jurkat <a href="https://2017.igem.org/Team:Freiburg/Results">4xCRE-pTal:eCFP</a> cells treated with forskolin and IBMX (Fig. 1b). With this results, we can demonstrate the our construct 4xHRE-pTal:eCFP and 4xCRE-pTal:eCFP are functional and responsive to hypoxic conditions and low pH, respectively.</p> | ||
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+ | <p><a href="https://2017.igem.org/Team:Freiburg/Design">The CARTEL<sup>TM</sup> AND gate</a> requires the <a href="https://2017.igem.org/Team:Freiburg/Lab_Knockout"knockdown or knockout</a> of the endogenous gene coding for hypoxia-inducible factor 1 alpha (HIF1A) to ensure exclusive control over HIF1A by the introduced AND gate. We generated stable Jurkat and HEK293T cell lines in which HIF1A was efficiently knock down. .In addition we could show that transient expression of HA tagged HIF1A in knockdown cells behaves as the endogenous HIF1A, without being affected by the siRNA used to generate the <a href="https://2017.igem.org/Team:Freiburg/Results"knockdown</a> (<b>Fig. 2</b>).</p> | ||
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<p><strong>Figure 2: Transient introduction of artificial HIF1A in HIF1A shRNA1 knockdown HEK293T cell line. </strong><br> | <p><strong>Figure 2: Transient introduction of artificial HIF1A in HIF1A shRNA1 knockdown HEK293T cell line. </strong><br> | ||
− | Induction of the overexpressed HIF1A-HA can be observed in the last lane. Endogenous and artificial HIF1A were detected with HIF1A antibody; reintroduced HIF1A was detected via an HA-tag; GAPDH served as a loading control. Wild type (WT) and knockdown (HIF1A shRNA1) cells were transfected with CMV:HIF1A-HA one day prior to induction with CoCl<sub>2</sub> to simulate hypoxia. Cells were harvested 24 hours after induction. Immunoblot assay was performed using antibodies against HIF1A, HA-tag and GAPDH.</p> | + | Induction of the overexpressed HIF1A-HA can be observed in the last lane. Endogenous and artificial HIF1A were detected with HIF1A antibody; reintroduced HIF1A was detected via an HA-tag; GAPDH served as a loading control. Wild type (WT) and knockdown (HIF1A shRNA1) cells were transfected with <i>CMV:HIF1A-HA</i> one day prior to induction with CoCl<sub>2</sub> to simulate hypoxia. Cells were harvested 24 hours after induction. Immunoblot assay was performed using antibodies against HIF1A, HA-tag and GAPDH.</p> |
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− | + | <p>As an additional safety feature for the CARTEL<sup>TM<sup> T cells we generated stable Jurkat T cell lines with the <a href="https://2017.igem.org/Team:Freiburg/HP/Results"kill switch</a> gene thymidine kinase. In the event of uncontrolled actions by the T cells, they can be eliminated by the administration of the drug ganciclovir. It is only affecting cells containing the kill switch, unmodified cells remain intact. To evaluate the efficiency of our kill switch we performed an apoptosis assay with ganciclovir (<b>Fig. 3</b>). Both cell lines expressing HSV-TK show significant reduced survival rate compared to wild type cells following treatment with ganciclovir. We were able to show that we can add an additional level of safety to our project design by introducing a functional kill switch. </p> | |
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<img src="https://static.igem.org/mediawiki/2017/archive/4/49/20171101160625%21T-FREIBURG-Ganciclovir_Killing.png" onclick="openModal();currentSlide(2)" class="hover-shadow cursor" height="100%" width="100%"> | <img src="https://static.igem.org/mediawiki/2017/archive/4/49/20171101160625%21T-FREIBURG-Ganciclovir_Killing.png" onclick="openModal();currentSlide(2)" class="hover-shadow cursor" height="100%" width="100%"> | ||
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− | <p><b>Figure | + | <p><b>Figure 3: Survival curve of Jurkat and HEK293T cells treated with ganciclovir.</b> Depicted is the survival rate in percent after induction of the killing with ganciclovir. Assay was done in <b>a)</b> Jurkat cells for 120 h and <b>b)</b> HEK293T cells for 72 h by counting living cells of wild type (WT) and stable cell lines containing the suicide gene HSV-TK (SG). All experiments were performed in triplicates, data represents mean ± SD.</p> |
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− | <p>This summer we could demonstrate all parts of the CARTEL<sup>TM</sup> AND gate are functional. After optimization and improvement of individual parts the system needs to be tested in primary T | + | <p>This summer we could demonstrate that all parts of the CARTEL<sup>TM</sup> AND gate are separately functional. After optimization and improvement of individual parts the system needs to be tested in primary T cells and may then proceed to pre-clinical studies with animal models. To learn more about possible improvements and future applications visit our <a href="https://2017.igem.org/Team:Freiburg/Outlook"outlook page!</a></p> |
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Revision as of 20:35, 1 November 2017
Proof of Concept
The CARTELTM AND gate is a genetic circuit which we have designed to be integrated in T cells, for a controlled expression of one output, the chimeric antigen receptor, in response to two inputs that are only found in a tumor microenvironment. The AND gate is constructed of two promoters interconnected through a protein, (HIF1A), to integrate two inputs into one output. Two alternative AND Gates were designed as follows: high VEGF concentrations and hypoxic conditions or alternatively low pH and hypoxic conditions.
As a proof of concept we characterized all the promoters separately in mammalian cell lines.
We therefore generated stable cell lines, containing the promoters for the inputs driving a reporter protein. Single and multiple enhancer elements for the inputs: pH, VEGF and hypoxia were designed and integrated in Jurkat and HEK293T cells.
.
We could show an induced induced activity of the hypoxia response element promoter and the cAMP response element promoter in Jurkat cells (Fig. 1) Flow cytometry of Jurkat 4xHRE-pTal:eCFP cells showed an increase of eCFP positive cells with rising concentration of CoCl2 (Fig. 1a). In addition we could show an induced activity of the cAMP response element promoter in Jurkat 4xCRE-pTal:eCFP cells treated with forskolin and IBMX (Fig. 1b). With this results, we can demonstrate the our construct 4xHRE-pTal:eCFP and 4xCRE-pTal:eCFP are functional and responsive to hypoxic conditions and low pH, respectively.
The CARTELTM AND gate requires the of the endogenous gene coding for hypoxia-inducible factor 1 alpha (HIF1A) to ensure exclusive control over HIF1A by the introduced AND gate. We generated stable Jurkat and HEK293T cell lines in which HIF1A was efficiently knock down. .In addition we could show that transient expression of HA tagged HIF1A in knockdown cells behaves as the endogenous HIF1A, without being affected by the siRNA used to generate the (Fig. 2).
As an additional safety feature for the CARTELTM T cells we generated stable Jurkat T cell lines with the gene thymidine kinase. In the event of uncontrolled actions by the T cells, they can be eliminated by the administration of the drug ganciclovir. It is only affecting cells containing the kill switch, unmodified cells remain intact. To evaluate the efficiency of our kill switch we performed an apoptosis assay with ganciclovir (Fig. 3). Both cell lines expressing HSV-TK show significant reduced survival rate compared to wild type cells following treatment with ganciclovir. We were able to show that we can add an additional level of safety to our project design by introducing a functional kill switch.
This summer we could demonstrate that all parts of the CARTELTM AND gate are separately functional. After optimization and improvement of individual parts the system needs to be tested in primary T cells and may then proceed to pre-clinical studies with animal models. To learn more about possible improvements and future applications visit our