Difference between revisions of "Team:BIT-China/Project/Sense"

 
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     <section class="content_container" id="mytop">
 
     <section class="content_container" id="mytop">
          <h2 class="title-h2">Sense</h2>
 
          <div class="vs-content">
 
            <h3 class="title-h3">Human sweet receptor T1R2-T1R3 heterologous expression</h3>
 
  
            <p class="my-content-p">To synthesis the target gene, Human sweet receptor T1R2-T1R3, we searched gene from web site NCBI firstly, then we use the software Snapgene to optimize the sequence. The way we choose to synthesis the target gene is to use oligo design software OLIGO. </p>
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        <h2 class="title-h2">Expression of <i>T1R2-T1R3</i></h2>
 +
<div class="section-upline cd-section" id="synthesis">
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            <h3 class="title-h3"><i>T1R2-T1R3</i> synthesis </h3>
  
            <p class="my-content-p">First we design 90 primers for each sweet receptor and each primer has 15bp overlap region with the adjacent one. Next we divided 90 primers into 3 groups,named block A、B and C,mix the primer of each group and made the final concentration to 10μm. We successfully get 6 desire fragments after PCR and purification.</p>
 
  
            <p class="my-content-p">To verify whether the heterodimer is successfully expressed and located at the certain position, we add different color protein as tags to each sweet receptor. After checking the part library,we get blue, yellow and green fluorescent tags. During the primer designing, we add another 20bp of N-terminal of each sweet receptor as the overlap region. So through OE-PCR we can link fluorescent tags to each sweet receptor. </p>
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<div class="my-content-box">
            <p class="my-content-p">Another way we design to verify whether the heterodimer is successfully expressed and located at the certain position is that to add different epitope tags instead the color protein to each sweet receptor.  
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<img style="width: 65%; height: auto;" src="https://static.igem.org/mediawiki/2017/f/f7/T--BIT-China--2017sense_pic1.png"/>
            The reason we choose two different methods is that according to the protein translation process, add color protein on the N-terminal of the target tagging protein may not give color protein the enough time to fold as it’s functional state before it been secretion, thus a his tag along with antibody detection maybe a better solution. </p>
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<span>Fig.1 The synthesis and expression of T1R2-T1R3</span>
 +
</div>
  
            <p class="my-content-p">In order to express the human receptor, we choose Saccharomyces cerevisiae strain Cen.PK2-1C as our host and the shuttle vector, pESC-Leu, to express T1R2-T1R3. We select two restrict sites for two receptor genes respectively. Then we use PCR to add BamHI and SalI to the T1R2 fragment. In the meantime, we add SpeI and NotI to T1R3 fragment. And the fragments with fluorescent tags or other tags also link to restrict sites through PCR. </p>
+
<p class="my-content-p">To synthesis human sweet receptor gene <i>T1R2-T1R3</i>, we firstly got its sequence from NCBI and used Snap Gene to optimize the sequence. Then we synthesized the target gene by using OLIGO (oligo design software).</p>
            <p class="my-content-p">After using T4 ligase for ligating the digested DNA fragments to the multi cloning sites of plasmid pESC-Leu, we transform the ligation production to the E.coli TOP 10 then select the positive colony using colony-PCR. </p>
+
  
            <p class="my-content-p">After finishing the construction of vector with sweetness receptor in E.coli, the recombination plasmid is transformed into yeast, Cen.PK2-1C with pFus-RFP-Cyc1t(G418 resistance vector), through LiAc transformation. Because of the auxotrophic selection marker Ura in the pESC-Ura, the colony is chosen under the SD-Uracil defect medium with 0.3% G418. Then the positive cloning can survive in this medium. In this way, we can get the reconstruction Saccharomyces cerevisiae successfully. </p>
+
<p class="my-content-p">To begin with, we designed 45 pairs of primers for each sweet receptor and each primer had a 15bp overlap region at each end. We divided the primers into 3 groups named block A, B and C, and mixed the primers of each group respectively with a final concentration of 10μM. We got 6 ideal fragments successfully after PCR and purification.</p>
  
            <p class="my-content-p">Since the T1R2-T1R3 with fluorescent tags is designed to confirm the expression and location of T1R2-T1R3 in the Cen.PK2-1C, we test our yeast by fluorescence plate reader through the immunofluorescence technology. We use the minimal induction medium to induce the Gal 1/10 promoters and express their downstream gene then detect the fluorescence </p>
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<div class="my-content-box">
           
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<img style="width: 45%; height: auto;" src="https://static.igem.org/mediawiki/2017/e/ed/T--BIT-China--2017sense_pic2.png"/>
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<span>Fig.2 Oligo assembly. Overlap-Extension PCR.</span>
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</div>
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</div>
  
           
+
   
            <p class="my-content-p">Protocol for fluorescence test through fluorescence plate reader (Red fluorescence protein):</p>
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            <div class="my-content-box">
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              <p class="my-content-p">1. Incubate the yeast for 24 hours preciously using SD-Uracil defect medium with 0.3% G418 to get the harvest the cells.</p>
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              <p class="my-content-p">2.  Replace the SD medium by minimal induction medium:</p>
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              <div class="my-img-box">
 
                <table class="table-co">
 
                  <tbody>
 
                    <tr>
 
                      <td>yeast ni- trogen base without amino acids (YNB)</td>
 
                      <td>6.7g/L</td>
 
                    </tr>
 
                    <tr>
 
                      <td>Necessary amino acid mixture (without Leu、Trp、Ura、His)</td>
 
                      <td>1.3g/L</td>
 
                    </tr>
 
                    <tr>
 
                      <td>Galactose</td>
 
                      <td>2%</td>
 
                    </tr>
 
                      <tr>
 
                      <td>Glycerol </td>
 
                      <td>2%</td>
 
                    </tr>
 
                      <tr>
 
                      <td>Leucine</td>
 
                      <td>0.1g/L</td>
 
                    </tr>
 
                    <tr>
 
                      <td>Tryptophan </td>
 
                      <td>0.04g/L</td>
 
                    </tr>
 
                    <tr>
 
                      <td>Histidine</td>
 
                      <td>0.02g/L</td>
 
                    </tr>
 
                  </tbody>
 
                </table>
 
              </div>
 
  
              <p class="my-content-p">3. Culture the yeast for 12 hours(这个可能会变).</p>
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<div class="section-upline cd-section" id="protein">
              <p class="my-content-p">4. Sampling and test the fluorescence adsorption value (FAV) by plate reader. The fluorescence excitation wavelength is 4884 nm and the fluorescence adsorption wavelength is 575 nm.(The excitation/absorption wavelength of different fluorescence protein is chosen according to their characteristic excitation/adsorption.Our antibody is PE conjugate goat anti-mouse IgG)</p>
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            <h3 class="title-h3">protein tags</h3>
            </div>
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          </div>
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<p class="my-content-p">To verify whether the heterodimer had been expressed and located at the proper position successfully, we set different color proteins as tags to each sweet taste receptor. We chose blue, yellow and green fluorescent tags separately. For the primer design, we added another 20bp of N-terminal of each sweet taste receptor as the overlap region. The fluorescent tags were linked to each sweet taste receptor by OE-PCR. </p>
          <div class="article-nav">
+
 
 +
<p class="my-content-p">Another way for verification was to add different epitope tags to each sweet taste receptor.</p>
 +
 
 +
<div class="my-content-box">
 +
<img style="width: 65%; height: auto;" src="https://static.igem.org/mediawiki/2017/2/24/T-BIT-China-201729-1.png"/>
 +
<span>Fig.3 Human sweet receptor T1R2-T1R3 heterologous expression </span>
 +
</div>
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 +
<div class="my-content-box">
 +
<img style="width: 45%; height: auto;" src="https://static.igem.org/mediawiki/2017/e/ea/T-BIT-China-201729-2.png"/>
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<span>Fig.4 Fused Myc & His tag separately at the N-terminal of the target protein</span>
 +
</div>
 +
 
 +
<p class="my-content-p">However, according to the protein expression process, adding color proteins on the N-terminal of the target protein may not provide enough time for color protein to fold at its functional state before being secreted. So we plan to use His tag along with antibody detection. </p>
 +
</div>
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<div class="section-upline cd-section" id="expression">
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            <h3 class="title-h3">T1R2-T1R3 expression</h3>
 +
<p class="my-content-p">In order to express the human receptor T1R2-T1R3, we chose <i>Saccharomyces cerevisiae</i> strain <i>CEN.PK2-1C</i> as the host and pESC-Leu as the shuttle vector. We selected two restriction sites, <i>BamHI</i> and <i>SalI</i>, for constructing gene <i>T1R2</i>; <i>SpeI</i> and <i>NotI</i> for <i>T1R3</i>. And to confirm the expression and location of the protein, tag Myc and tag His were linked to <i>T1R2</i> and <i>T1R3</i> respectively.</p>
 +
 
 +
<p class="my-content-p">The digested DNA fragments were cloned into plasmid pESC-Leu. Then we transformed the recombinant plasmid into the <i>E.coli</i> BMTop10 and screened positive clones by colony-PCR.</p>
 +
 
 +
<p class="my-content-p">The recombinant plasmid in <i>E.coli</i> was extracted and transformed by LiAc transformation method into <i>CEN.PK2-1C</i> which contains the Pfus-mRFP-CYC1t(G418 resistance vector) gene circuit, a detection device.</p>
 +
 
 +
<p class="my-content-p">With the help of auxotrophic selection marker Leu in pESC-Leu, the colony was chosen by the Leucine-defect SD medium containing 0.3% G418.</p>
 +
<p class="my-content-p">In this way, we got the recombinant <i>Saccharomyces cerevisiae</i> with sweet taste receptor and detection device successfully.</p>
 +
 
 +
<p class="my-content-p">T1R2-T1R3 with His tag and Myc tag was designed to confirm the expression and location of T1R2-T1R3 in the <i>CEN.PK2-1C</i>, which was tested through the immunofluorescence technology. </p>
 +
 
 +
<p class="my-content-p">Then we used the minimal induction medium to induce the <i>Gal1/Gal10</i> promoter. After protein expressed, we incubated the primary antibody for His tag and Myc tag, then added second antibody for displaying the expression and location of receptors in yeast cells.  </p>
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Latest revision as of 05:40, 31 October 2017

BIT-CHINA

Expression of T1R2-T1R3

T1R2-T1R3 synthesis

Fig.1 The synthesis and expression of T1R2-T1R3

To synthesis human sweet receptor gene T1R2-T1R3, we firstly got its sequence from NCBI and used Snap Gene to optimize the sequence. Then we synthesized the target gene by using OLIGO (oligo design software).

To begin with, we designed 45 pairs of primers for each sweet receptor and each primer had a 15bp overlap region at each end. We divided the primers into 3 groups named block A, B and C, and mixed the primers of each group respectively with a final concentration of 10μM. We got 6 ideal fragments successfully after PCR and purification.

Fig.2 Oligo assembly. Overlap-Extension PCR.

protein tags

To verify whether the heterodimer had been expressed and located at the proper position successfully, we set different color proteins as tags to each sweet taste receptor. We chose blue, yellow and green fluorescent tags separately. For the primer design, we added another 20bp of N-terminal of each sweet taste receptor as the overlap region. The fluorescent tags were linked to each sweet taste receptor by OE-PCR.

Another way for verification was to add different epitope tags to each sweet taste receptor.

Fig.3 Human sweet receptor T1R2-T1R3 heterologous expression
Fig.4 Fused Myc & His tag separately at the N-terminal of the target protein

However, according to the protein expression process, adding color proteins on the N-terminal of the target protein may not provide enough time for color protein to fold at its functional state before being secreted. So we plan to use His tag along with antibody detection.

T1R2-T1R3 expression

In order to express the human receptor T1R2-T1R3, we chose Saccharomyces cerevisiae strain CEN.PK2-1C as the host and pESC-Leu as the shuttle vector. We selected two restriction sites, BamHI and SalI, for constructing gene T1R2; SpeI and NotI for T1R3. And to confirm the expression and location of the protein, tag Myc and tag His were linked to T1R2 and T1R3 respectively.

The digested DNA fragments were cloned into plasmid pESC-Leu. Then we transformed the recombinant plasmid into the E.coli BMTop10 and screened positive clones by colony-PCR.

The recombinant plasmid in E.coli was extracted and transformed by LiAc transformation method into CEN.PK2-1C which contains the Pfus-mRFP-CYC1t(G418 resistance vector) gene circuit, a detection device.

With the help of auxotrophic selection marker Leu in pESC-Leu, the colony was chosen by the Leucine-defect SD medium containing 0.3% G418.

In this way, we got the recombinant Saccharomyces cerevisiae with sweet taste receptor and detection device successfully.

T1R2-T1R3 with His tag and Myc tag was designed to confirm the expression and location of T1R2-T1R3 in the CEN.PK2-1C, which was tested through the immunofluorescence technology.

Then we used the minimal induction medium to induce the Gal1/Gal10 promoter. After protein expressed, we incubated the primary antibody for His tag and Myc tag, then added second antibody for displaying the expression and location of receptors in yeast cells.

TOP