Difference between revisions of "Team:Aix-Marseille/Safety"

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{{Aix-Marseille|title=Safety|toc=__NOTOC__}}<html><style>h2,h3{clear:both}
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.nick{font-weight: normal; color: #f6da05; font-size: 0.8em;}</style></html>
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<div class="column full_size">
 
<div class="column full_size">
  
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<h1> Safety </h1>
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Safety is really important for research.
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<p>Please visit <a href="https://2017.igem.org/Safety">the main Safety page</a> to find this year's safety requirements & deadlines, and to learn about safe & responsible research in iGEM.</p>
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In this page, we tell you all about the safety aspects of our project: the safety in the lab, the safety integrated in our project design and the safety of the shipment.
  
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<p>On this page of your wiki, you should write about how you are addressing any safety issues in your project. The wiki is a place where you can <strong>go beyond the questions on the safety forms</strong>, and write about whatever safety topics are most interesting in your project. (You do not need to copy your safety forms onto this wiki page.)</p>
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===Safe lab work===
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<div class="column full_size">
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<h5>Safe Project Design</h5>
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<p>Does your project include any safety features? Have you made certain decisions about the design to reduce risks? Write about them here! For example:</p>
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[[File:Labo.jpg|500px|right|thumb|]]
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[[File:Disposal_bin.jpg|500px|right|thumb|]]
  
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<ul>
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Concerning the safety in the lab, we all had a lecture by Chantal SOSCIA, the safety officer, about the risks and precautions.
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<li>Choosing a non-pathogenic chassis</li>
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This lecture was prior to starting the wet lab.
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<li>Choosing parts that will not harm humans / animals / plants</li>
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She told us about basic lab rules (for instance, washing hands before and after an experiment) and basic precautions for our safety: wearing a cotton lab coat, gloves, glasses (if needed), long pants, closed shoes, to have long hair tied.
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<li>Substituting safer materials for dangerous materials in a proof-of-concept experiment</li>
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Then she told us about biological and chemical risks, to be aware of the risks before starting an experiment to take the right precautions, how to store the different products.
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<li>Including an "induced lethality" or "kill-switch" device</li>
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She taught us the risks associated with several things we would use (like liquid nitrogen, sonicator, etc.) and what precautions to take in each case.
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</ul>
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We also learnt the disposal procedures for chemical and biological wastes.
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After the training session she gave us a booklet summarizing everything she told us.
  
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</div>
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In case of emergency, we had a trained responder in the lab next door.
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He showed us the location of fire extinguishers and the defibrillator.
  
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The experiments on ''Pseudomonas aeruginosa'' where carried out by [[Team:Aix-Marseille/Team#Gauthier_Dangla_P.C3.A9lissier_alias_Spiny-Headed_Seasnake|Gauthier DANGLA-PELISSIER]], a PhD student, in a level 2 biosafety lab, respecting the rules fit for this kind of lab.
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<h5>Safe Lab Work</h5>
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<p>What safety procedures do you use every day in the lab? Did you perform any unusual experiments, or face any unusual safety issues? Write about them here!</p>
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We were particularly careful when using toxic chemical compound:
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* GelRed for agarose gel revelation: we were wearing a glove on the hand touching the contaminated objects (spatula, gel, revealing box) ;
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* Chloroform: handled under the fume hood ;
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* Crystal violet (or gentian violet): it was Gauthier who used it, wearing gloves and a lab coat;
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* SDS (sodium dodecyl sulfate): wearing gloves.
  
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</div>
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===Safe project design===
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<!--Should mention use of PLP not phage to avoid GMO dissemination, and DEPS and QS-FA purification-->
  
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The avantage of [[Team:Aix-Marseille/Bacteriophages|PLPs]] is their non-replicative nature. These particules mimic the organization of native phages, but do not contain genetic information for there own replication. Thus, PLPs can not persist in the environment and are designed to be specific only to their target. This approach does not pollute the environment.
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<h5>Safe Shipment</h5>
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<p>Did you face any safety problems in sending your DNA parts to the Registry? How did you solve those problems?</p>
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Concerning the protein [[Team:Aix-Marseille/DEPS|DEPS]], after its production the enzyme is purified with a HisTag, that allows us to collect the exact protein, ensuring no contaminations.
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</div>
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Finally, the [[Team:Aix-Marseille/QS|fatty acid]] is used in studied concentration, low enough to avoid any negative effect in the plant, except for targeted bacteria.
  
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</html>
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===Safe shipment===
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Concerning the shipment of the parts for the Registry, there was no biological issues since the DNA is dry and there are no bacteria. We just followed the protocol and packed everything in a box.

Latest revision as of 23:50, 1 November 2017

Safety

Safety is really important for research. In this page, we tell you all about the safety aspects of our project: the safety in the lab, the safety integrated in our project design and the safety of the shipment.

Safe lab work

Labo.jpg
Disposal bin.jpg

Concerning the safety in the lab, we all had a lecture by Chantal SOSCIA, the safety officer, about the risks and precautions. This lecture was prior to starting the wet lab. She told us about basic lab rules (for instance, washing hands before and after an experiment) and basic precautions for our safety: wearing a cotton lab coat, gloves, glasses (if needed), long pants, closed shoes, to have long hair tied. Then she told us about biological and chemical risks, to be aware of the risks before starting an experiment to take the right precautions, how to store the different products. She taught us the risks associated with several things we would use (like liquid nitrogen, sonicator, etc.) and what precautions to take in each case. We also learnt the disposal procedures for chemical and biological wastes. After the training session she gave us a booklet summarizing everything she told us.

In case of emergency, we had a trained responder in the lab next door. He showed us the location of fire extinguishers and the defibrillator.

The experiments on Pseudomonas aeruginosa where carried out by Gauthier DANGLA-PELISSIER, a PhD student, in a level 2 biosafety lab, respecting the rules fit for this kind of lab.

We were particularly careful when using toxic chemical compound:

  • GelRed for agarose gel revelation: we were wearing a glove on the hand touching the contaminated objects (spatula, gel, revealing box) ;
  • Chloroform: handled under the fume hood ;
  • Crystal violet (or gentian violet): it was Gauthier who used it, wearing gloves and a lab coat;
  • SDS (sodium dodecyl sulfate): wearing gloves.

Safe project design

The avantage of PLPs is their non-replicative nature. These particules mimic the organization of native phages, but do not contain genetic information for there own replication. Thus, PLPs can not persist in the environment and are designed to be specific only to their target. This approach does not pollute the environment.

Concerning the protein DEPS, after its production the enzyme is purified with a HisTag, that allows us to collect the exact protein, ensuring no contaminations.

Finally, the fatty acid is used in studied concentration, low enough to avoid any negative effect in the plant, except for targeted bacteria.

Safe shipment

Concerning the shipment of the parts for the Registry, there was no biological issues since the DNA is dry and there are no bacteria. We just followed the protocol and packed everything in a box.