Difference between revisions of "Team:NYMU-Taipei/Notebook"

 
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#Protocol h1 {
 
#Protocol h1 {
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#Protocol h3 {
 
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<body>
 
<body>
<div id="Protocol" >
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<center>
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 +
 +
 +
<div id="Timeline" >
 +
                        <center>
 
<h3></h3>
 
<h3></h3>
 
<img src="https://static.igem.org/mediawiki/2017/f/f9/T--NYMU-Taipei--notebook.jpg"
 
<img src="https://static.igem.org/mediawiki/2017/f/f9/T--NYMU-Taipei--notebook.jpg"
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<h3></h3>
 
<h3></h3>
 
<h3></h3>
 
<h3></h3>
<h1>Protocol</h1>
 
 
<h3></h3>
 
 
<h3 style='padding-left:20px;'>Nitrogen-starvation-related experiments</h3>
 
<blockquote>
 
<a herf="">PCC 6803 gDNA extraction</a>
 
<p>NrtA expression<a herf="">Download the file</a></p>
 
<p>endolysin construct<a herf="">Download the file</a></p>
 
<p>holin construct<a herf="">Download the file</a></p>
 
<p>endolysin-holin construct<a herf="">Download the file</a></p>
 
<p>endolysin-holin-NrtA construct<a herf="">Download the file</a></p>
 
<p><a herf="">Download the file</a></p>
 
<p><a herf="">Download the file</a></p>
 
<p><a herf="">Download the file</a></p>
 
</blockquote>
 
</div>
 
 
<div id="Timeline" >
 
 
<h1>Timeline</h1>
 
<h1>Timeline</h1>
 
<p></p>
 
<p></p>
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</a>
 
</a>
 
<p>
 
<p>
 +
<br>
 
<b>2017-06-19</b>&nbsp;&nbsp; prepare stock1 and stock5<br>
 
<b>2017-06-19</b>&nbsp;&nbsp; prepare stock1 and stock5<br>
 
<b>2017-06-20</b>&nbsp;&nbsp; (1) reprepare stock5<br>
 
<b>2017-06-20</b>&nbsp;&nbsp; (1) reprepare stock5<br>
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</a>
 
</a>
 
<p>
 
<p>
 +
<br>
 
<b>2017-07-02</b>&nbsp;&nbsp; extract <i>Pseudomonas aeruginosa</i> plasmid and freeze into refrigerator<br>
 
<b>2017-07-02</b>&nbsp;&nbsp; extract <i>Pseudomonas aeruginosa</i> plasmid and freeze into refrigerator<br>
 
<b>2017-07-03</b>&nbsp;&nbsp; proliferate <i>Pseudomonas aeruginosa</i> and freeze into refrigerator<br>
 
<b>2017-07-03</b>&nbsp;&nbsp; proliferate <i>Pseudomonas aeruginosa</i> and freeze into refrigerator<br>
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</a>
 
</a>
 
<p>
 
<p>
 +
<br>
 
<b>2017-08-04</b> &nbsp;&nbsp; Digest check: BBa_K112806<br>
 
<b>2017-08-04</b> &nbsp;&nbsp; Digest check: BBa_K112806<br>
 
<b>2017-08-05</b> &nbsp;&nbsp; <i>Chlorella Vulgaris</i> growth curve measuring<br>
 
<b>2017-08-05</b> &nbsp;&nbsp; <i>Chlorella Vulgaris</i> growth curve measuring<br>
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</a>
 
</a>
 
<p>
 
<p>
 +
<br>
 
<b>2017-09-01</b> &nbsp;&nbsp; (1)Fusion PCR: Ampicillin resistance, B0015
 
<b>2017-09-01</b> &nbsp;&nbsp; (1)Fusion PCR: Ampicillin resistance, B0015
 
<br>     (2) Three pieces PCR: 5NSII, 3NSII, and PBR322 ori<br>  
 
<br>     (2) Three pieces PCR: 5NSII, 3NSII, and PBR322 ori<br>  
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<div class='panel'>
 
<div class='panel'>
 
<div id="s5" class="expandable" style='height: 24px;padding-top:5px;'>
 
<div id="s5" class="expandable" style='height: 24px;padding-top:5px;'>
<a href="#!" onclick="toggleHeight5(this, 240); return false"  
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<a href="#!" onclick="toggleHeight5(this, 2240); return false"  
 
style="font-family: 'Acme', sans-serif;font-size:28px;color: #479fcc;height: 20px;">
 
style="font-family: 'Acme', sans-serif;font-size:28px;color: #479fcc;height: 20px;">
 
October, 2017
 
October, 2017
 
</a>
 
</a>
 
<p>
 
<p>
<b>2017-06-19</b>&nbsp;&nbsp; prepare stock1 and stock5<br>
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<br>
 +
<b>2017-10-01</b> &nbsp;&nbsp; (1) Colony PCR: 5NSII-Psb1c3
 +
<br>     (2) Liquid culture: 5NSII-Psb1c3
 +
<br>     (3) Colony PCR: 5NSII-ORI-3NSII-Psb1c3
 +
<br>     (4) Liquid culture: Site-directed mutated clones
 +
<br>     (5) Construct: Psb1c3-PrbcL-IndC
 +
<br>     (6) Liquid culture: NrtA-C33
 +
 
 +
<br><b>2017-10-02</b> &nbsp;&nbsp; (1) Finish all aite-directed mutagenesis
 +
<br>     (2) plasmid extraction: Psb1c3-5NSII, 5NSII-ORI-3NSII-Psb1c3
 +
<br>     (3) Digestion check: Psb1c3-5NSII, 5NSII-ORI-3NSII-Psb1c3
 +
<br>     (4) Colony PCR: Psb1c3-PrbcL-IndC
 +
<br>     (5) Liquid culture: Psb1c3-PrbcL-IndC
 +
<br>     (6) Liquid culture (French Press): NrtA-C33, competent cell
 +
 
 +
<br><b>2017-10-03</b> &nbsp;&nbsp; (1) French Press and dialysis
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<br>     (2) Sequencing: MelA
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<br>     (3) Construct Psb1c3-NrtA-Endolysin
 +
 
 +
<br><b>2017-10-04</b> &nbsp;&nbsp; (1) Construct pPIGBACK-J04450
 +
<br>     (2) Construct Psb1c3-B0015-AMP
 +
<br>     (3) Construct Psb1c3-PrbcL-CrtZ
 +
<br>     (4) check nitrate concentration
 +
<br>     (5) Colony PCR: NrtA-endolysin
 +
<br>     (6) Liquid culture: NrtA-endolysin
 +
 
 +
<br><b>2017-10-05</b> &nbsp;&nbsp; (1) Colony PCR: pPIGBACK-J04450
 +
<br>     (2) Liquid culture: pPIGBACK-J04450
 +
<br>     (3) Digestion check: NrtA-endolysin
 +
 
 +
<br><b>2017-10-06</b> &nbsp;&nbsp; (1) DNA extraction and digestion-pPIGBACK-CrtZ
 +
<br>     (2) Finish construct pPIGBACK-J04450
 +
<br>     (3) Colony PCR: Psb1c3-B0015-AMP
 +
<br>     (4) Liquid culture: Psb1c3-B0015-AMP
 +
 
 +
<br><b>2017-10-07</b> &nbsp;&nbsp; (1) Plasmid extraction: Psb1c3-B0015-AMP
 +
<br>     (2) Digest check: Psb1c3-B0015-AMP
 +
<br>     (3) Construct: Psb1c3-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-08</b> &nbsp;&nbsp; (1) Colony PCR: Psb1c3-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-09</b> &nbsp;&nbsp; (1) Liquid culture: competent cell for electroporation
 +
<br>     (2) Frech Press
 +
<br>     (3) Nitrate concentration assay
 +
 
 +
<br><b>2017-10-10</b> &nbsp;&nbsp; (1) Electroporation: competent cell
 +
 
 +
<br><b>2017-10-11</b> &nbsp;&nbsp; (1) Test electroporation: Psb1c3-J04450
 +
 
 +
<br><b>2017-10-13</b> &nbsp;&nbsp; (1) Construct: Psb1c3-IndC (electroporation)
 +
<br>     (2) Construct: pPIGBACK-IndC (electroporation)
 +
<br>     (3) Construct: pPIGBACK-PrbcL-CrtZ
 +
<br>     (4) Construct: Psb1c3-B0015-AMP
 +
<br>     (5) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
<br>     (6) Suicide mechanism functional test
 +
 
 +
<br><b>2017-10-14</b> &nbsp;&nbsp; (1) Colony PCR: pPIGBACK-IndC
 +
<br>     (2) Liquid culture: pPIGBACK-IndC
 +
<br>     (3) Colony PCR: pPIGBACK-PrbcL-CrtZ
 +
<br>     (4) <i>Chlorella Vulgaris</i> oil functional test: NrtA
 +
<br>     (5) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
<br>     (6) Suicide mechanism functional test
 +
 
 +
<br><b>2017-10-15</b> &nbsp;&nbsp; (1) Finish construct pPIGBACK-PrbcL-IndC, Psb1c3-PrbcL-IndC
 +
<br>     (2) Liquid culture: All parts
 +
<br>     (3) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-16</b> &nbsp;&nbsp; (1) <i>Chlorella Vulgaris</i> oil functional test: NrtA
 +
<br>     (2) Plasmid extraction: all parts
 +
<br>     (3) Digestion check: all parts
 +
<br>     (4) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-17</b> &nbsp;&nbsp; (1) NrtA add to device again
 +
<br>     (2) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-18</b> &nbsp;&nbsp; (1) NrtA add to device again
 +
<br>     (2) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-19</b> &nbsp;&nbsp; (1) NrtA add to device again
 +
<br>     (2) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-20</b> &nbsp;&nbsp; (1) NrtA add to device again
 +
<br>     (2) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-21</b> &nbsp;&nbsp; (1) NrtA add to device again
 +
<br>     (2) Starch functional test: pPIGBACK-PrbcL-CrtZ
 +
 
 +
<br><b>2017-10-22</b> &nbsp;&nbsp; (1) PCR: MelA, IndC
 +
<br>     (2) Ligation: Psb1c3-MelA, pPIGBACK-MelA, Psb1c3-IndC, pPIGBACK-IndC
 +
<br>     (3) Transformation: Psb1c3-MelA, pPIGBACK-MelA, Psb1c3-IndC, pPIGBACK-IndC
 +
 
 +
<br><b>2017-10-23</b> &nbsp;&nbsp; (1) PCR: MelA, IndC, Psb1c3-B0015-AMP
 +
<br>     (2) Ligation: Psb1c3-MelA, pPIGBACK-MelA, Psb1c3-IndC, pPIGBACK-IndC, Psb1c3-B0015-AMP
 +
<br>     (3) Liquid culture: Psb1c3-MelA, pPIGBACK-MelA, Psb1c3-IndC, pPIGBACK-IndC
 +
 
 +
<br><b>2017-10-24</b> &nbsp;&nbsp; (1) PCR: PrbcL-MelA, Psb1c3-IndC, pPIGBACK-IndC
 +
<br>     (2) Ligation: Psb1c3-PrbcL-MelA, pPIGBACK-PrbcL-MelA
 +
<br>     (3) Transformation: Psb1c3-PrbcL-MelA, pPIGBACK-PrbcL-MelA, Psb1c3-IndC, pPIGBACK-IndC, Psb1c3-B0015-AMP
 +
<br>     (4) Liquid culture: Psb1c3-B0015-AMP
 +
 
 +
<br><b>2017-10-25</b> &nbsp;&nbsp; (1) Digestion check all parts
 +
<br>     (2) Plasmid extraction: Psb1c3-B0015-AMP
 +
<br>     (3) Digestion check: Psb1c3-B0015-AMP
 +
 
 
</p>
 
</p>
 
 
 
<center>
 
<center>
<a href="#!" onclick="toggleHeight5(this, 240);" style='font-size:20px;color:#2c498c'>
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click to close
 
click to close
 
</a>
 
</a>
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<h1>Labnote</h1>
 
<h1>Labnote</h1>
 
<p></p>
 
<p></p>
<a herf="https://static.igem.org/mediawiki/2017/7/7d/T--NYMU-Taipei--Labnote001.pdf">Download the file</a>
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<a href="https://static.igem.org/mediawiki/2017/0/04/T--NYMU-Taipei--labnote.pdf" target="_blank">Download the file</a>
 
<p></p>
 
<p></p>
<embed src="https://static.igem.org/mediawiki/2017/7/7d/T--NYMU-Taipei--Labnote001.pdf" style="width:80%;height:500px;padding-left:10%">
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<embed src="https://static.igem.org/mediawiki/2017/0/04/T--NYMU-Taipei--labnote.pdf" style="width:80%;height:500px;padding-left:10%">
 
</div>
 
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</body>
 
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</html>
 
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Latest revision as of 16:14, 28 November 2017

Timeline