Line 246: | Line 246: | ||
mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt;height:78.9pt"> | mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt;height:78.9pt"> | ||
<p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"><o:p> </o:p></span></p> | <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"><o:p> </o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Novel short chain | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Novel short chain | ||
insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (-QRGGGSGGGQRR-)<o:p></o:p></span></p> | insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (-QRGGGSGGGQRR-)<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span class="SpellE"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">YncM</span></span><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"> secretion tag to | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span class="SpellE"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">YncM</span></span><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"> secretion tag to | ||
translocate protein into media<o:p></o:p></span></p> | translocate protein into media<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">N-terminal 6x His | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">N-terminal 6x His | ||
Tag purification<o:p></o:p></span></p> | Tag purification<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">4x GSS flexible | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">4x GSS flexible | ||
linker<o:p></o:p></span></p> | linker<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">TEV protease | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">TEV protease | ||
cleavage site<o:p></o:p></span></p> | cleavage site<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Extended ribosome | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Extended ribosome | ||
binding site<o:p></o:p></span></p> | binding site<o:p></o:p></span></p> | ||
Line 593: | Line 593: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt;height:35.15pt"> | mso-border-alt:solid windowtext .5pt;padding:0cm 5.4pt 0cm 5.4pt;height:35.15pt"> | ||
− | <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Novel single chain | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Novel single chain | ||
insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (QRGGGSGGGQRR)<o:p></o:p></span></p> | insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (QRGGGSGGGQRR)<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal <span class="SpellE">Ecotin</span> tag for targeting proteins to the periplasm<o:p></o:p></span></p> | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal <span class="SpellE">Ecotin</span> tag for targeting proteins to the periplasm<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal 6x His | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal 6x His | ||
Tag<o:p></o:p></span></p> | Tag<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">4x GSS flexible | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">4x GSS flexible | ||
linker<o:p></o:p></span></p> | linker<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">TEV protease | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">TEV protease | ||
cleavage site<o:p></o:p></span></p> | cleavage site<o:p></o:p></span></p> | ||
− | <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt | + | <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family: |
Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Extended ribosome | Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt "Times New Roman""> </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Extended ribosome | ||
binding site<o:p></o:p></span></p> | binding site<o:p></o:p></span></p> |
Revision as of 10:18, 30 October 2017
GOLD
PART NAME / NO. |
SOURCE |
KEY FEATURES |
WHY IS IT GOLD? |
YncM-Winsulin |
Bacillus subtilis (YncM secretion tag) |
· Novel short chain
insulin analogue (Winsulin) with a 12AA linker (-QRGGGSGGGQRR-) · YncM secretion tag to
translocate protein into media · N-terminal 6x His
Tag purification · 4x GSS flexible
linker · TEV protease
cleavage site · Extended ribosome
binding site |
We
demonstrated that it works: · We tested it in
insulin-sensitive cell lines and saw an increase in glycogen synthesis and
glucose oxidation above basal levels, proving its bioactivity · We showed via an
ELISA assay that whilst the cell lysate did not contain Winsulin,
the media in which the cells were growing did. Therefore
the YncM secretion tag worked as expected The
results for these assays can be found here |
Ecotin-Proinsulin |
E. Coli (Ecotin
tag) |
· Human proinsulin · N-terminal Ecotin tag for targeting proteins to the periplasm · N-terminal 6x His
tag · 4x GGS flexible
linker · trypsin protease
cleavage site for His-tag and C-peptide cleavage · Extended ribosomal
binding site |
We
improved previous parts: BBa_M39904 and BBa_M1877 by: · completing their
sequence · Adding a
periplasmic transporter tag (for more efficient folding in an oxidative
environment) · Adding an efficient
ribosomal binding site · Adding an
N-terminal His tag for purification We
demonstrated that it works: · By testing it
insulin-sensitive cell lines and saw an increase in glycogen synthesis and
glucose oxidation above basal levels, therefore proving its bioactivity The
results for these assays can be found here |
Human (Human
proinsulin) |
|||
Cytoplasmic-Proinsulin BBa_K2417001 |
Human (Human
proinsulin) |
· Human proinsulin · N-terminal 6x His
tag · 4x GGS flexible linker · Trypsin protease
cleavage site for His-tag and C-peptide cleavage · Extended ribosomal
binding site |
We
improved previous parts: BBa_M39904 and BBa_M1877 by: · completing their
sequence · Adding an efficient
ribosomal binding site · Adding an
N-terminal His tag for purification We demonstrated that it works: · By testing it insulin-sensitive
cell lines and saw an increase in glycogen synthesis and glucose oxidation
above basal levels, therefore proving its bioactivity The
results for these assays can be found here |
SILVER
PART NAME / NO. |
SOURCE |
KEY FEATURES |
WHY IS IT SILVER? |
Cytoplasmic-Winsulin |
N/A – Winsulin is self designed from literature and mammalian insulins |
· Novel single chain
insulin analogue (Winsulin) with a 12AA linker
(QRGGGSGGGQRR) · N-terminal 6x His
Tag · 4x GSS flexible
linker · TEV protease
cleavage site · Extended ribosome
binding site |
· We validated our
parts by showing that they work in producing insulin. We performed an ELISA
assay testing for properly folded insulin, and detected the presence of
Cytoplasmic Winsulin. The
results for the assay can be found here |
BRONZE
PART NAME / NO. |
SOURCE |
KEY FEATURES |
WHY IS IT BRONZE? |
Ecotin-Winsulin |
E. Coli (Ecotin
Tag) |
· Novel single chain
insulin analogue (Winsulin) with a 12AA linker (QRGGGSGGGQRR) · N-terminal Ecotin tag for targeting proteins to the periplasm · N-terminal 6x His
Tag · 4x GSS flexible
linker · TEV protease
cleavage site · Extended ribosome
binding site |
We submitted this DNA part to
the registry, for other teams to use in the future |
N/A – Winsulin is self designed from literature and mammalian insulins |