Difference between revisions of "Team:Sydney Australia/Parts"

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   <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"><o:p>&nbsp;</o:p></span></p>
 
   <p class="MsoNormal" align="center" style="text-align:center"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"><o:p>&nbsp;</o:p></span></p>
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   <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Novel short chain
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Novel short chain
 
   insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (-QRGGGSGGGQRR-)<o:p></o:p></span></p>
 
   insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (-QRGGGSGGGQRR-)<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l16 level1 lfo12"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span class="SpellE"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">YncM</span></span><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"> secretion tag to
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span class="SpellE"><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">YncM</span></span><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand"> secretion tag to
 
   translocate protein into media<o:p></o:p></span></p>
 
   translocate protein into media<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l16 level1 lfo12"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">N-terminal 6x His
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">N-terminal 6x His
 
   Tag purification<o:p></o:p></span></p>
 
   Tag purification<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l16 level1 lfo12"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">4x GSS flexible
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">4x GSS flexible
 
   linker<o:p></o:p></span></p>
 
   linker<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l16 level1 lfo12"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">TEV protease
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">TEV protease
 
   cleavage site<o:p></o:p></span></p>
 
   cleavage site<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt;mso-list:l16 level1 lfo12"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt"><!--[if !supportLists]--><span lang="EN-US" style="font-size:15.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Extended ribosome
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:15.0pt;font-family:Quicksand">Extended ribosome
 
   binding site<o:p></o:p></span></p>
 
   binding site<o:p></o:p></span></p>
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   <p class="MsoListParagraphCxSpFirst" style="text-indent:0.0pt   "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Novel single chain
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Novel single chain
 
   insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (QRGGGSGGGQRR)<o:p></o:p></span></p>
 
   insulin analogue (<span class="SpellE">Winsulin</span>) with a 12AA linker (QRGGGSGGGQRR)<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l5 level1 lfo23"><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
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   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt   "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal <span class="SpellE">Ecotin</span> tag for targeting proteins to the periplasm<o:p></o:p></span></p>
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal <span class="SpellE">Ecotin</span> tag for targeting proteins to the periplasm<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l5 level1 lfo23"><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
+
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt   "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal 6x His
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">N-terminal 6x His
 
   Tag<o:p></o:p></span></p>
 
   Tag<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l5 level1 lfo23"><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
+
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt   "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">4x GSS flexible
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">4x GSS flexible
 
   linker<o:p></o:p></span></p>
 
   linker<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpMiddle" style="text-indent:0.0pt;mso-list:l5 level1 lfo23"><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
+
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   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">TEV protease
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">TEV protease
 
   cleavage site<o:p></o:p></span></p>
 
   cleavage site<o:p></o:p></span></p>
   <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt;mso-list:l5 level1 lfo23"><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
+
   <p class="MsoListParagraphCxSpLast" style="text-indent:0.0pt   "><!--[if !supportLists]--><span lang="EN-US" style="font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Extended ribosome
 
   Symbol;mso-bidi-font-family:Symbol"><span style="mso-list:Ignore">·<span style="font:7.0pt &quot;Times New Roman&quot;">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><!--[endif]--><span lang="EN-US" style="font-size:14.0pt;font-family:Quicksand">Extended ribosome
 
   binding site<o:p></o:p></span></p>
 
   binding site<o:p></o:p></span></p>

Revision as of 10:18, 30 October 2017

GOLD

 

PART NAME / NO.

 

SOURCE

KEY FEATURES

WHY IS IT GOLD?

YncM-Winsulin

BBa_K2417005

 

Bacillus subtilis (YncM secretion tag)

 

 

·      Novel short chain insulin analogue (Winsulin) with a 12AA linker (-QRGGGSGGGQRR-)

·      YncM secretion tag to translocate protein into media

·      N-terminal 6x His Tag purification

·      4x GSS flexible linker

·      TEV protease cleavage site

·      Extended ribosome binding site

 

 

We demonstrated that it works:

·      We tested it in insulin-sensitive cell lines and saw an increase in glycogen synthesis and glucose oxidation above basal levels, proving its bioactivity

·      We showed via an ELISA assay that whilst the cell lysate did not contain Winsulin, the media in which the cells were growing did. Therefore the YncM secretion tag worked as expected

 

The results for these assays can be found here

Ecotin-Proinsulin

BBa_K2417000

 

E. Coli (Ecotin tag)

 

 

 

·      Human proinsulin

·      N-terminal Ecotin tag for targeting proteins to the periplasm

·      N-terminal 6x His tag

·      4x GGS flexible linker

·      trypsin protease cleavage site for His-tag and C-peptide cleavage

·      Extended ribosomal binding site

 



We improved previous parts:

BBa_M39904 and BBa_M1877 by:

·      completing their sequence

·      Adding a periplasmic transporter tag (for more efficient folding in an oxidative environment)

·      Adding an efficient ribosomal binding site

·      Adding an N-terminal His tag for purification

 

We demonstrated that it works:

·      By testing it insulin-sensitive cell lines and saw an increase in glycogen synthesis and glucose oxidation above basal levels, therefore proving its bioactivity

 

The results for these assays can be found here

Human (Human proinsulin)

Cytoplasmic-Proinsulin     BBa_K2417001

Human (Human proinsulin)

·      Human proinsulin

·      N-terminal 6x His tag

·      4x GGS flexible linker

·      Trypsin protease cleavage site for His-tag and C-peptide cleavage

·      Extended ribosomal binding site

 

We improved previous parts:

BBa_M39904 and BBa_M1877 by:

·      completing their sequence

·      Adding an efficient ribosomal binding site

·      Adding an N-terminal His tag for purification

 

We demonstrated that it works:

·      By testing it insulin-sensitive cell lines and saw an increase in glycogen synthesis and glucose oxidation above basal levels, therefore proving its bioactivity

 

The results for these assays can be found here

SILVER

 

PART NAME /  NO.

 

SOURCE

KEY FEATURES

WHY IS IT SILVER?

Cytoplasmic-Winsulin

BBa_K2417003

 

N/A Winsulin is self designed from literature and mammalian insulins

 

 

·      Novel single chain insulin analogue (Winsulin) with a 12AA linker (QRGGGSGGGQRR)

·      N-terminal 6x His Tag

·      4x GSS flexible linker

·      TEV protease cleavage site

·      Extended ribosome binding site

 

 

 

·      We validated our parts by showing that they work in producing insulin. We performed an ELISA assay testing for properly folded insulin, and detected the presence of Cytoplasmic Winsulin.

 

 

The results for the assay can be found here

 

 

BRONZE

 

PART NAME / NO.

 

SOURCE

KEY FEATURES

WHY IS IT BRONZE?

Ecotin-Winsulin

BBa_K2417002

 

E. Coli (Ecotin Tag)

 

·      Novel single chain insulin analogue (Winsulin) with a 12AA linker (QRGGGSGGGQRR)

·      N-terminal Ecotin tag for targeting proteins to the periplasm

·      N-terminal 6x His Tag

·      4x GSS flexible linker

·      TEV protease cleavage site

·      Extended ribosome binding site

We submitted this DNA part to the registry, for other teams to use in the future

 

N/A Winsulin is self designed from literature and mammalian insulins