Difference between revisions of "Team:NYMU-Taipei/Pigments"

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Backbone Design
 
Backbone Design
 
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<p>  To genetically engineer cyanobacteria, we chose <font class='mark_backbone_color'><i>Synechococcus elongatus PCC 7942</i></font> as our engineering host. Our main strategy is to embark on <font class='mark_backbone_color'>gene double-crossover homologous recombination</font> in <i>S. elongatus PCC 7942</i> genome, which is the first cyanobacterial strain to be transformed by exogenous DNAs and is reliably transformable through natural uptake of extracellular DNAs.
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<p>  To genetically engineer cyanobacteria, we chose <b><i>Synechococcus elongatus PCC 7942</i></b> as our engineering host. Our main strategy is to embark on <b>gene double-crossover homologous recombination</b> in <i>S. elongatus PCC 7942</i> genome, which is the first cyanobacterial strain to be transformed by exogenous DNAs and is reliably transformable through natural uptake of extracellular DNAs.
 
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<p>  First, we constructed a vector which is able to finish double-crossover homologous gene recombination in <i>S. elongatus PCC 7942</i>. The vector (pPIGBACK) contains <b>5’- and 3’-ends of the neutral site II (<font class='mark_backbone_color'>NSII</font>)</b> and an <b>ampicillin resistance gene</b> <font class='mark_backbone'>(AmpR)</font> for antibiotic selection. Then we fused AmpR with double terminator, <font class='mark_backbone'>BBa_B0015</font>, which is proved to be functional in cyanobacteria.  
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<p>  First, we constructed a vector which is able to finish double-crossover homologous gene recombination in <i>S. elongatus PCC 7942</i>. The vector (pPIGBACK) contains <b>5’- and 3’-ends of the neutral site II (NSII)</b> and an <b>ampicillin resistance gene (AmpR)</b> for antibiotic selection. Then we fused AmpR with double terminator, <b>BBa_B0015</b>, which is proved to be functional in cyanobacteria.  
Additionally, in order to easily manipulate DNAs for gene cloning and plasmid preparation in <i>E. coli DH5α</i>, the <b>replication origin</b> <font class='mark_backbone'>(ORI)</font> of pBR322 was also introduced to make the plasmid vector replicable in <i>E. coli</i>.
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Additionally, in order to easily manipulate DNAs for gene cloning and plasmid preparation in <i>E. coli DH5α</i>, the <b>replication origin (ORI)</b> of pBR322 was also introduced to make the plasmid vector replicable in <i>E. coli</i>.
Then, in order to overexpress foreign genes in the cyanobacteria, the <b>intrinsic promoter of Rubisco large subunit</b> <font class='mark_backbone'>(PrbcL)</font> was chosen as the target for vector construction. PrbcL regulates the expression of the most abundant proteins in photosynthetic species and has been proven to have a high activity to express foreign genes, so we chose PrbcL as the promoter of our pigment gene.  
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Then, in order to overexpress foreign genes in the cyanobacteria, the <b>intrinsic promoter of Rubisco large subunit (PrbcL)</b> was chosen as the target for vector construction. PrbcL regulates the expression of the most abundant proteins in photosynthetic species and has been proven to have a high activity to express foreign genes, so we chose PrbcL as the promoter of our pigment gene.  
 
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<p>  The strategy we chose to construct the vector is to fuse B0015 and AmpR together first. Secondly, we fused 5’- and 3’-ends of the neutral site II (NSII) with PBR322 replication origin (ORI) together. At last, we ligated two parts together. The vector (pPIGBACK) is used to transform into PCC7942 with the inserted pigment gene in our experiments.
 
<p>  The strategy we chose to construct the vector is to fuse B0015 and AmpR together first. Secondly, we fused 5’- and 3’-ends of the neutral site II (NSII) with PBR322 replication origin (ORI) together. At last, we ligated two parts together. The vector (pPIGBACK) is used to transform into PCC7942 with the inserted pigment gene in our experiments.

Revision as of 05:34, 9 October 2017

Pigments

  In our project, we transfer five types of pigment-related gene sequence (Indigoidine, Zeaxanthin, Melanin, Astaxanthin and Lycopene) into our cyanobacteria. We expect to get six different colors of microalgae, so we could see whether changing the original color of microalgae would change wavelength absorbance and have better photosynthetic efficiencies. Due to better photosynthetic efficiencies, we could elevate oil accumulation in microalgae, which would have great benefit in both industry and scientific usage.