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<div class="post-it" style="margin-bottom:30px; display: flex; align-items:center;"> | <div class="post-it" style="margin-bottom:30px; display: flex; align-items:center;"> | ||
<p><img src="https://static.igem.org/mediawiki/2017/c/c7/T--TU_Darmstadt--Deacetylase_Pikto.png" style="float:left;margin-right:1%;width:15%"> | <p><img src="https://static.igem.org/mediawiki/2017/c/c7/T--TU_Darmstadt--Deacetylase_Pikto.png" style="float:left;margin-right:1%;width:15%"> | ||
− | We verified the expression of NodB in E. coli BL21 with a SDS-Page. After tagging the protein with | + | We verified the expression of NodB in E. coli BL21 with a SDS-Page. After tagging the protein with a His-Tag, we performed purification and refolding through an ÄKTA pure system, and verified the success through another SDS-Page.<br> |
− | To test whether NodB works properly, we used the acetic acid assay kit (Acetate Kinase Manual Format | + | To test whether NodB works properly, we used the acetic acid assay kit (Acetate Kinase Manual Format, Megazyme, Bray, Ireland). NodB deacetylates chitin to create chitosan. This chemical step releases acetic acid. The amount of acetic acid is indirectly measured via amount of NAD+. Thus, the rate of acetic acid is stoichiometric with the amount of NAD+ in the last reaction step.<br> |
As the graph shows, this verification was successful and indicates that NodB was refolded properly and is present in its active form.<br> | As the graph shows, this verification was successful and indicates that NodB was refolded properly and is present in its active form.<br> | ||
<a href="https://2017.igem.org/Team:TU_Darmstadt/project/chitin_deacetylase#three">See more Details</a> | <a href="https://2017.igem.org/Team:TU_Darmstadt/project/chitin_deacetylase#three">See more Details</a> |
Revision as of 16:35, 31 October 2017
ChiTUcare
Proof of Concept
Here we want to give you a short tour about what we achieved in the project. We show our results and give a view on the resulting product, an protease-sensing hydrogel.
Chitin Synthase NodC
We expressed the chitin synthase NodC in E. coli Top10 successfully. The protein was tagged with a His-tag and purified via an ÄKTA system. To verify the expression and purification a SDS-PAGE was done.
The functionality of the NodC enzyme was verified by performing the UDP-Glo™ Glycosyltransferase Assay. The evaluation of the assay shows that the NodC enzyme converts the UDP-GlcNAc to free UPD and a growing oligo-GlcNAc-chain. The free UDP is converted to ATP, which acts as a substrate for a luciferase reaction and creates luminescence. So the assay and the increasing luminescence depending on increasing enzyme concentrations shows that the NodC enzyme can create chitin oligomers.
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Chitin Deacetylase NodB
We verified the expression of NodB in E. coli BL21 with a SDS-Page. After tagging the protein with a His-Tag, we performed purification and refolding through an ÄKTA pure system, and verified the success through another SDS-Page.
To test whether NodB works properly, we used the acetic acid assay kit (Acetate Kinase Manual Format, Megazyme, Bray, Ireland). NodB deacetylates chitin to create chitosan. This chemical step releases acetic acid. The amount of acetic acid is indirectly measured via amount of NAD+. Thus, the rate of acetic acid is stoichiometric with the amount of NAD+ in the last reaction step.
As the graph shows, this verification was successful and indicates that NodB was refolded properly and is present in its active form.
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Hydrogel
We manufactured several hydrogels containing non-toxic and cost-effective gelling agents to form optimal wound dressings. Our hydrogels could be formed with basic laboratory equipment at any shape and could easily be adjusted to the affected tissues for optimal wound healing.
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Chemistry
We manufactured a protease-sensing chitosan derivative. For the verifaction of its functionality it was measured via a fluorometer. It showed a peak at 390 nm before the protease was added. After cleavage with proteases, a shift of this peak to the wavelength of 450 nm was observed.
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ChiTUcare
To show that our project works, we manufactured a chitosan hydrogel with a fluorophore coupled to it.
Upon addition of a protease solution to our ChiTUcare prototype, the hydrogel starts to glow under UV light within 7 minutes (the video speed was increased).
This proves our concept of a protease sensing hydrogel on the basis of chitosan.
As an easy and cheap to manufacture prototype, we provide an eco-friendly and adjustable system to nurture wound-healing with an antibacterial, anti-viral wound dressing, that works as a sensor for bacterial infection by emitting a blue light within minutes upon irradiation of non-hazardous UV light.