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<img src="https://static.igem.org/mediawiki/2017/9/9a/T--Georgia_State--FactorCcascade.jpg" alt="Cotting Cascade" width="300" height="300" style="float:right;"> | <img src="https://static.igem.org/mediawiki/2017/9/9a/T--Georgia_State--FactorCcascade.jpg" alt="Cotting Cascade" width="300" height="300" style="float:right;"> | ||
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<img src="https://static.igem.org/mediawiki/2017/1/1d/T--Georgia_State--factorcdiagram.jpg" alt="Factor C diagram" width="250" height="250" style="float:left;"> | <img src="https://static.igem.org/mediawiki/2017/1/1d/T--Georgia_State--factorcdiagram.jpg" alt="Factor C diagram" width="250" height="250" style="float:left;"> | ||
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<h1 style="color:#ffffff; background-color:#1A5276;; -moz-border-radius: 15px; -webkit-border-radius: 15px; padding:15px; text-align: center; font-family: Trebuchet MS"> What is LAL assay? </h1> | <h1 style="color:#ffffff; background-color:#1A5276;; -moz-border-radius: 15px; -webkit-border-radius: 15px; padding:15px; text-align: center; font-family: Trebuchet MS"> What is LAL assay? </h1> | ||
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An injectable healthcare product like a vaccine and any other healthcare product like implantables that come in contact with a patients blood or cerebrospinal fluid must be sterile. However, the process to kill bacteria results in the release of endotoxin into the product because the cell wall can withstand steam sterilization. The products must be tested for endotoxin before use. | An injectable healthcare product like a vaccine and any other healthcare product like implantables that come in contact with a patients blood or cerebrospinal fluid must be sterile. However, the process to kill bacteria results in the release of endotoxin into the product because the cell wall can withstand steam sterilization. The products must be tested for endotoxin before use. | ||
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Revision as of 18:28, 31 October 2017
Results
Background
What is Lipopolysaccharide?
Endotoxin is a Lipopolysaccharide (LPS) it consists of a core oligosaccharide, O-antigen a glycan polymer and the lipid A. The lipid A is a phosphorylated glucosamine disaccharide with multiple fatty acids and is the cause for endotoxin toxicity. LPS are bacterial poisons and can impact numerous biological activities. When gram-negative bacteria enter the body a complement immune response is initiated. Once the cell wall and/or bacteria are destroyed a significant of endotoxins are released which can lead to endotoxemia the symptoms of which are vomiting, nausea, diarrhea, fever, disseminated intravascular coagulation, vascular collapse, organ failure and possibly death. Antibiotics will not inactivate the endotoxins, therefore detection of the endotoxin before they enter the body is prudent.
What do Horseshoe crabs have to do with endotoxin?
![Horseshoe Crab in Aquarium](https://static.igem.org/mediawiki/2017/c/cf/T--Georgia_State--horseshoebranfromaquarium.jpg)
In the presence of endotoxin, a clotting cascade is invoked to activate the proclotting enzyme which is used to transform coagulogen into coagulin. The zymogen Factor C is a glycoprotein that is 123kD, and the only enzyme that is endotoxin sensitive. It consists of an H chain (80kD) and L chain (43kD). Factor C activates in the presence of LPS and undergoes autocatalysis, the phenylalanine- isoleucine bond on the L chain is cleaved resulting in a B chain (34kD) and an A chain (8.5 kD). Factor C then activates Factor B which activates the proclotting enzyme. An activated proclotting enzyme is called the clotting enzyme which converts coagulogen into coagulin.
![Cotting Cascade](https://static.igem.org/mediawiki/2017/9/9a/T--Georgia_State--FactorCcascade.jpg)
![Factor C diagram](https://static.igem.org/mediawiki/2017/1/1d/T--Georgia_State--factorcdiagram.jpg)
What is LAL assay?
![Clotting Cascade](https://static.igem.org/mediawiki/2017/2/24/T--Georgia_State--LALcascadeandBLUEblood.jpg)
An injectable healthcare product like a vaccine and any other healthcare product like implantables that come in contact with a patients blood or cerebrospinal fluid must be sterile. However, the process to kill bacteria results in the release of endotoxin into the product because the cell wall can withstand steam sterilization. The products must be tested for endotoxin before use.
So where does GSU come in to play?
Using horseshoe crab blood is an unsustainable practice due to the impact on the crabs and the expense of the LAL assay. A third of the blood is taken from the horseshoe crab before they are realsed back into the water. The theory is that the crabs eventually heal however up to 30% of bled crabs die. The total population is decreasing rapidly while producers are forced to increase harvests to keep up with global demand. The LAL test is expensive to make; a quart of blood is sold for $15,000. Part of affordable healthcare means that the production of the products used also need to be affordable.
Creating an alternative form of testing is unavoidable. Instead of creating a recombinant version of the entire clotting cascade it is more efficient to create a recombinant version of factor c and include a detection mechanism to detect its autocatalysis in the presence of LPS.
Next: Experimental Design
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We created new, synthetic promoters to respond to this disease marker
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We characterized microRNA profiles in model cells under varying conditions
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We characterized a serine integrase, TP901, that could give a genetic circuit memory across a cycle
Back to Home
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References
- - - C. Nezhat et al 2012. Endometriosis: Ancient disease, ancient treatments.http://www.nezhat.org/file/Endometriosis-Article.pdf
- - - Do you have Endo? Endometriosis Research Center. https://www.endocenter.org/do-you-have-endo/
- - - FAQ. MIT Center for Gynepathology Research. http://web.mit.edu/cgr/faq---links.html
- - - Altered expression of microRNA-451 in eutopic endometrium of baboons (Papio anubis) with endometriosis. Joshi NR et al. 2015.
NCBI https://www.ncbi.nlm.nih.gov/pubmed/26370665
- - - Gene Expression Analysis of Endometrium Reveals Progesterone Resistance and Candidate Susceptibility Genes in Women
with Endometriosis R. O. Burney et all 2009. Endocrinology http://press.endocrine.org/doi/full/10.1210/en.2006-1692
- - - What is Endometriosis?. Endometriosis Foundation of America. http://www.endofound.org/endometriosis