The Inception of the Concept

Upon being asked to find the number of bacteria in a given sample, the response from members of our iGEM team has invariably been a long sigh and a plea to the realms of the supernatural. That most human quality - laziness - and flaws in traditional techniques, which we will revisit below, have led to us designing a potential solution in the form of a Digital Inline Holographic Microscope (DIHM).

How does it work?

Digital holographic microscopy makes use of diffraction. This a physical phenomenon wherein objects (or apertures) in the path of a source of waves will create patterns in the waves. These patterns depend on the shape of the objects themselves. Since electromagnetic waves are, somewhat unsurprisingly, waves, it is possible to use the diffraction of light to create patterns that we can see.

The above images show examples of patterns being formed in wavefronts by apertures in the path of otherwise uninterrupted waves. As can be seen by contrasting these images, the pattern created by a larger aperture is distinguishable from a smaller aperture's pattern. The particular distinctions can be described through mathematical formalisms. Thence, once the diffraction patterns have been created, it is possible to infer the shape and size of the objects that caused them, if we also know the wavelength of the light source and the distance from the sample at which the patterns were observed.

Go Together, Grow Together.

This section is still under development, but it will soon contain information regarding a co-culture comprising Chlamydomonas reinhardtii and Escherichia coli.