Microfluidics

In our experiment, we want to study the neural network activity and behavioral response of Caenorhabditis elegans under light stimuli of specific wavelengths. Thus, we need to design an accurate and user-friendly platform for studying the collective behavior of worms with high throughput as well as live neuron-level observations under natural conditions.

To meet these design goals, we designed three microfluidic chips: the Selection Chip to select worms of appropriate sizes, the Gaussian Plate to monitor changes in the worm’s group behavior, and the Immobilization Plate to observe live neuron activities without anesthetization. (Fig.1)

Fig. 1 Three microfluidic systems in our experiment. A) Design of the Selection Chip and the Gaussian Chip. B) The Selection Chip and the Gaussian Chip, fabricated on the same substrate C) Design of the Immobilization Chip. D) The Immobilization Chip.

Detailed Microfluidics

Light Modulator

Multiple devices of optics are designed and created for the various experiment requirements, such as, stimulate neuron of C. elegans, train C. elegans and induce C. elegans move in a special direction. All devices attempts to modulate the spatio-temporal pattern in an elegant and effective way. We constructed projector light source and modulate mercury lamp. Just let us start to play with light.

Projector Light Source

We use 395nm light to activate calcium indicator protein GEM-GECO by Lumencor LED Illuminator. Then CoChR and Chrimson are activated by blue light and red light from LCD projector. LCD projector and LED Illuminator are merged by a double LH Adapter contained a semi-transparent mirror, which connect to microscope. So we can use these two light source in the same time.

Fig. 2 Apparatus to merge projector and microscope.

Fig.We project a movie on the hand.

Fig. 3 A) Spectra of filters and mirrors are used in our system. B) Filter ET630/20X is for Chrimson, and Filter ET480/20x is for CoChR. Both these are installed outside 3LCDs. C) Di-mirror and emission filter are installed inside microscope

We try develop a more powerful and hackable open source software suite called ColorMapping to track and activate multi C. eleganss or cell independently in one eye-filed. User can modify multi color, intensity, time, locations of light alternately in GUI. ColorMapping can be found in GitHub, which still is developing.　

Fig. 10 The design's flowchart of ColorMapping . Image display in user interface from camera by Lima with Andor SDK3. User can track worm with some parameter. Then software generate image and project into microscope from projector. Finally, camera captures these pattern.

Arduino Modulate Mercury Lamp

A simple and effective device to output pulse of certain wavelength of light. On time and off time of pulse is custom by Arduino. Wavelength of light is changed by replacing filter before beam expander.

Overview of Arduino modulate Mercury lamp(A) Arduino transfer the pulse command to servo. (B)The interview of Mercury Lamp.The servo fix at the original bottom. (C) The beam expander connect to stereoscope

Detailed Light Modulator