Difference between revisions of "Team:KU Leuven/Protocols"

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                                 <h3>Experiment 1: Korte beschrijving</h3>
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                                 <h3>Cell Culture</h3>
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<h2><b>Medium of HEK 293 cells </b></h2>
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<br>
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<ul>
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<li>DMEM (Gibco N° 41965-039) 500 ml<li>
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<li>50 ml  (10 %)  FCS = (Hyclone)</li>
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<li>10 ml Penicillin/Streptomycin (Gibco N° 15070-071) = 100-100U/ml</li>
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<li>10 ml Glutamax (Gibco N° 35050-038) = 10 mM</li>
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<li>5 ml Non-Essential-Amino-Acids (Gibco N° 1140-035) = 10x</li>
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<b>Growing Conditions</b>
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<br>
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<ul>
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<li>Incubate at 37°C and 10% CO<sub>2</sub></li>
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<li>Split cells around 70-90% confluency</li>
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<li>Change medium twice a week</li>
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</ul>
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<br>
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<br>
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<b><h2>Standard procedure for Trypsinization</b><h2>
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<br>
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<ul>
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<li>wash the cells with Versene (Gibco N° 15040-033, ± 2 min)</li>
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<li>Remove versene and add Trypsin (Gibco N° 25300-096)</li>
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<li>Incubate at 37°C (around 3-5 min)</li>
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<li>Stop the trypsinization by adding 5-10 times volume of medium</li>
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<li>Count cells</li>
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<li>Centrifuge for 5 minutes at 1200 rpm</li>
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<li>Aspirate supernatant and resuspend the cells in medium</li>
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<li>Plate cells for experiments or culture</li>
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</ul>
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<br>
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<b><h2>Coating of Glass coverslips (for patch-clamp or Ca2+ imaging)</h2></b>
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<pre>
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<br>
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Poly-l-lysine (PLL, sigma P2636)
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Dissolved at 0.1 mg/ml in Milli-Q H<sub>2</sub>O
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Stored at –20°C
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Once opened stored at RT
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Coverslips
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18mm
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<ul>
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<li>Prepare 12 well plates with a coverslip in each well</li>
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<li>Transfer 1 sterilized coverslip to each well</li>
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<li>Add 350 ml of PLL to each coverslip</li>
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<li>Incubate for 20 minutes at RT</li>
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<li>Aspirate and add Milli-Q H2O to each coverslip</li>
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<li>Incubate for 20 minutes at RT</li>
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<li>Aspirate H<sub>2</sub>O and store for experiments</li>
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You can keep the plates for several days at 4°C
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</ul>
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</pre>
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<br>
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<b><h2>Seeding Cells</b></h2>
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<b><h3>Seeding cells for single-cell experiments</h3></b>
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<br>
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<ul>
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<li>Spray your hands with ethanol, take the 6 well plate with cells out of the incubator and check the density of the cells</li>
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<li>Place the cells under the flow</li>
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<li>Remove the medium</li>
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<li>Wash the cells with 1 ml of versene for 2 minutes</li>
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<li>Remove versene and add 500μl of trypsin</li>
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<li>Incubate at 37°C, 10% CO2 for about 5-10 minutes</li>
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<li>Stop the trypsinization by adding 5 ml of medium.</li>
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<li>Transfer cell suspension to a 50 ml Falcon tube</li>
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<li>Separate the cells by pulling them with a 5 ml syringe through a black needle of 22G (5-10 times)</li>
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</ul>
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<br>
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<h4><b>1.1 Ca<sup>2+</sup> imaging</h4></b>
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<pre>
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Cells are typically seeded in a 12-well plate, on PLL coated round coverslips of 18 mm
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Add 1 ml of medium to each 12-well of your plate
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If the cells in the 6-well had a density of 95-100%, typically seed 400-500 microliters of cell suspension per 12-well (density depending on experimental needs)
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Incubate at least 2 hours for cell attachment to the coverslip
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</pre>
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<br>
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<b><h4>1.2 Patch clamp</b></h4>
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<pre>
 +
Cells are typically seeded in a 12-well plate, on PLL coated round coverslips of 18 mm
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Add 1 ml of medium to each 12-well of your plate
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If the cells in the 6-well had a density of 95-100%, typically seed 100-300 microliters of cells per 12-well (density depending on experimental needs)
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Incubate at least 2 hours for cell attachment to the coverslip
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</pre>
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<br>
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<b><h3>Ca<sup>2+</sup> imaging</b></h3>
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<h4><b>Fura-2, AM (MW: 1001,9)</b></h4>
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<pre>
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Dilute 50 μg of Fura-2 in 50 μl DMSO (1 mM stock solution)
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Make aliquots of 2 μl in brown eppies and store at -20°C
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To load cells (1 well): add 2 μl of Fura-2 to 1 ml of medium (2μM work solution)
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Incubate cells for 30 minutes before measurement
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</pre>
 
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Revision as of 08:03, 31 August 2017

Experiments

In the lab, we used different experimental procedures. There are protocols for the wet and bacterial lab, for the cell culture lab and for the electrophysiology lab.

Cell Culture