Difference between revisions of "Team:Manchester/Attributions"

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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2017.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2017.igem.org/Judging/Awards"> award listed above</a>. </p>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2017.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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<h1>Attributions</h1>
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<p> Each team must clearly attribute work done by the student team members on this page. The team must distinguish work done by the students from work done by others, including the host labs, advisors, instructors, and individuals not on the team roster.  
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This is a bronze medal requirement. Please see the <a href="https://2017.igem.org/Judging/Medals">Medals requirements page</a> for more details.</p>
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    <span class="border linespacingbig">ATTRIBUTION</span>
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  </div>
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</div>
  
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<div class="txtpadding" style="color: #777;background-color:white;text-align:center;text-align: center;">
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<h5> Why is this page needed? </h5>
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  <h3 style="text-align:center;">Acknowledgement</h3>
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<p>The Attribution requirement helps the judges know what you did yourselves and what you had help with. We don't mind if you get help with difficult or complex techniques, but you must report what work your team did and what work was done by others.</p>
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  <p>This project wouldn't be possible without commitment and dedication from many parties. It is our greatest pleasure to acknowledge the assistance and contribution of the individuals and groups who have helped us towards the successful completion of the project.</p>
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<p>
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For example, you might choose to work with an animal model during your project. Working with animals requires getting a license and applying far in advance to conduct certain experiments in many countries. This is difficult to achieve during the course of a summer, but much easier if you can work with a postdoc or PI who has the right licenses.</p>
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    <span class="border linespacingbig" style="background-color: rgba(255, 255, 255, 0.6);font-size:25px;color: #111;">WORK DONE BY TEAM MEMBERS</span>
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  </div>
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</div>
  
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<div style="position:relative;">
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<h5> What should this page have?</h5>
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  <div class="txtpadding" style="color:#ddd;background-color:#282E34;text-align:center;text-align: center;">
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  <h3 style="text-align:center;color:#ddd;">Adam Hannaford</h3>
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  <p>Lab work on tags and their characterisation. Design of Experiment for protein expression optimisation.</p>
  
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<ul>
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  <h3 style="text-align:center;color:#ddd;">Alice Fraser</h3>
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<li>General Support</li>
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  <p>Interlab study. Lab work on Eut proteins for their characterisation.</p>
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<li>Project support and advice</li>
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<li>Fundraising help and advice</li>
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<li>Lab support</li>
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<li>Difficult technique support</li>
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<li>Project advisor support</li>
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<li>Wiki support</li>
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<li>Presentation coaching</li>
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<li>Human Practices support</li>
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<li> Thanks and acknowledgements for all other people involved in helping make a successful iGEM team</li>
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</ul>
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</div>
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  <h3 style="text-align:center;color:#ddd;">Amber Hall</h3>
 +
  <p>Graphic and video editing, slide making and microscopy. Lab work. Wiki illustrations.</p>
  
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<div class="clear"></div>
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  <h3 style="text-align:center;color:#ddd;">James Engleback</h3>
 +
  <p>Lab work on characterisation of PPKs. Design of Experiment for protein expression optimisation.</p>
  
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<div class="column half_size">
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  <h3 style="text-align:center;color:#ddd;">Jessica Burns</h3>
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  <p>Cloning of PPK and Eut parts into submission and expression vectors. Lab work on Eut proteins for their characterisation.</p>
  
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<div class="highlight">
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  <h3 style="text-align:center;color:#ddd;">Maciej Słowiński</h3>
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<h5> Can we base our project on a previous one? </h5>
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  <p>Seeking sponsors and looking for collaborations. Building business model.</p>
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<p>Yes! You can have a project based on a previous team, or based on someone else's idea, <b>as long as you state this fact very clearly and give credit for the original project.</b> </p>
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  <h3 style="text-align:center;color:#ddd;">Ong Jun Yang</h3>
 +
  <p>Wiki development and phosphate starvation operon modelling. Lab work. 3D animations.</p>
 +
 
 +
  <h3 style="text-align:center;color:#ddd;">Owen Julianto Jonathan</h3>
 +
  <p>Every bit of human practices and making cost estimation from continuous culture modelling. Lab work. Wiki illustrations.</p>
 +
 
 +
  <h3 style="text-align:center;color:#ddd;">Theodore Glenaldo</h3>
 +
  <p>Interlab study and lab work. Safety forms submission. Wiki illustrations.</p>
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  </div>
 
</div>
 
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  <div class="caption">
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    <span class="border linespacingbig" style="background-color: rgba(255, 255, 255, 0.6);font-size:25px;color: #111;">INTERNAL RESOURCES</span>
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  </div>
 
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  <div class="txtpadding" style="color:#ddd;background-color:#282E34;text-align:center;text-align: center;">
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  <h3 style="text-align:center;color:#ddd;">Research Institute</h3>
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  <p>Manchester Institute of Biotechnology (MIB)</p>
  
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  <br/>
  
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<h5>Inspiration</h5>
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  <h3 style="text-align:center;color:#ddd;">Project Advisors</h3>
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<p>Take a look at what other teams have done:</p>
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  <p>Eriko Takano, Rainer Breitling</p>
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<ul>
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  <p>Advice on everything concerning the project.</p>
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<li><a href="https://2011.igem.org/Team:Imperial_College_London/Team">2011 Imperial College London</a> (scroll to the bottom)</li>
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<li><a href="https://2014.igem.org/Team:Exeter/Attributions">2014 Exeter </a></li>
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<li><a href="https://2014.igem.org/Team:Melbourne/Attributions">2014 Melbourne </a></li>
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<li><a href="https://2014.igem.org/Team:Valencia_Biocampus/Attributions">2014 Valencia Biocampus</a></li>
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</ul>
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</div>
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  <br/>
  
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<div class="clear"></div>
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  <h3 style="text-align:center;color:#ddd;">Project Supervisors</h3>
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  <p>William Finnigan, Marc Biarnes-Carrera, Ross Kent, Nicholas Weise, Jonathan Wilkes, Adam Amara</p>
 +
  <p>Advice on experimental design, troubleshooting, part assembly and characterisation, orders and deliveries, Design of Experiment, opportunities for outreach and articles.</p>
  
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<div class="column half_size">
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  <br/>
  
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<h5>Team training and Project start</h5>
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  <h3 style="text-align:center;color:#ddd;">Team Members</h3>
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<p>Tell us if your institution teaches an iGEM or synthetic biology class and when you started your project:</p>
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  <p>Adam Hannaford, Alice Fraser, Amber Hall, James Engleback, Jessica Burns, Maciej Słowiński, Ong Jun Yang, Owen Julianto Jonathan, Theodore Glenaldo</p>
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<ul>
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<li>Does your institution teach an iGEM or synthetic biology course?</li>
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<li>When did you start this course?</li>
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<li>Are the syllabus and course materials freely available online?</li>
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<li>When did you start your brainstorming?</li>
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<li>When did you start in the lab?</li>
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<li>When did you start working on  your project?</li>
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</ul>
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  <br/>
  
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  <h3 style="text-align:center;color:#ddd;">Trainings</h3>
 +
  <p>Tanya Aspinall - Health & Safety induction</p>
 +
  <p>Sandra Taylor - Microscopy training</p>
 +
  <p>John Hughes - Ultracentrifugation training</p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Finance</h3>
 +
  <p>Louise Barnes, Lisa Beattie</p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Human Practices</h3>
 +
  <p>Dr. Andrew Balmer, Dr. Robert Meckin - on social implications of synthetic biology</p>
 +
  <p>Dr. Duncan Thomas - Manchester Institute of Innovation</p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Computational Modelling</h3>
 +
  <p>Areti Tsigkinopoulou, Aliah Hawari</p>
 +
  <p>Advice on computational modelling of phosphate starvation operon, sources of scripts and papers on ensemble modelling.</p>
 +
 +
  </div>
 
</div>
 
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<div class="bgimg-3">
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  <div class="caption">
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    <span class="border linespacingbig" style="background-color: rgba(255, 255, 255, 0.6);font-size:25px;color: #111;">EXTERNAL RESOURCES</span>
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  </div>
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<div style="position:relative;">
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  <div class="txtpadding" style="color:#ddd;background-color:#282E34;text-align:center;text-align: center;">
  
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  <h3 style="text-align:center;color:#ddd;">Fundamentals</h3>
 +
  <p>Martin Warren - <a href= "https://www.ncbi.nlm.nih.gov/pubmed/28105684" 
 +
target= "_blank" 
 +
style= "color: #5cbeff">
 +
Original paper on microcompartment-directed polyphosphate accumulation</a></p>
 +
  <p>Ashley Chessher - Eut plasmids and microscopy image samples</p>
 +
  <p>Inspiring previous work by HKU iGEM 2013, Dundee iGEM 2011, York iGEM 2015</p>
  
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Human Practices</h3>
 +
  <p>Professor Issy Caffoor - Ex-Innovation Manager at Yorkshire Water</p>
 +
  <p>Jonathan Abra - Knowledge Transfer Network</p>
 +
  <p>Dr. Ben Reeve - CustoMem</p>
 +
  <p>Dr. Benjamin Tam - Isle Utilities</p>
 +
  <p>Dr. David Tompkins and PhD student Katie Ward - Aqua Enviro</p>
 +
  <p>Sarah Lyons - Davyhulme Treatment Works</p>
 +
  <p>Dr. Rick Watson - University of Manchester Intellectual Property (UMIP)</p>
 +
  <p>Dr. Linda Kahl - BioBricks Foundation</p>
 +
  <p>Department of Environment, Food and Rural Affairs (DEFRA)</p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Suppliers/ Sponsors</h3>
 +
  <p>New England Biolabs, Qiagen, Promega, IDT, BioCatNet, IBCarb, Snapgene, Mathworks, Agilent</p>
 +
  <p>The University of Manchester, Manchester Metropolitan University</p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Design of Experiment (DoE)</h3>
 +
  <p>Dr Markus Gershater - Synthace Ltd</p>
 +
  <p> </p>
 +
 +
  <br/>
 +
 +
  <h3 style="text-align:center;color:#ddd;">Software</h3>
 +
  <p>CellProfiller: pipeline used in the paper "Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering" published in ACS Synthetic Biology</p>
 +
  <p>by Chuchu Zhang, Christopher Jakobson, Marilyn Slininger Lee and Danielle Tullman-Ercek</p>
 +
  </div>
 
</div>
 
</div>
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<div class="bgimg-1">
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  <div class="caption">
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    <span class="border linespacingbig">THANKS FOR MAKING THIS PROJECT POSSIBLE!</span>
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  </div>
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{{:Team:Manchester/Templates/Footer}}

Latest revision as of 03:18, 2 November 2017

HOME
TEAM
PROJECT
Overview
Description
Results
Demonstration
Medal Criteria
Achievement
NOTEBOOK
Protocols
Diary
Lab Book
InterLab
Measurement
PARTS
Parts
Basic Parts
Composite Parts
Improved Parts
Part Collection
HUMAN PRACTICES
Silver HP
Water Industry
Integrated and Gold
Intellectual Property
Public Engagement
Entrepreneurship
MODELLING
Overview
D. O. Experiment
Continuous Culture
PHO Operon
JUDGING FORM
ATTRIBUTION

Acknowledgement

This project wouldn't be possible without commitment and dedication from many parties. It is our greatest pleasure to acknowledge the assistance and contribution of the individuals and groups who have helped us towards the successful completion of the project.

WORK DONE BY TEAM MEMBERS

Adam Hannaford

Lab work on tags and their characterisation. Design of Experiment for protein expression optimisation.

Alice Fraser

Interlab study. Lab work on Eut proteins for their characterisation.

Amber Hall

Graphic and video editing, slide making and microscopy. Lab work. Wiki illustrations.

James Engleback

Lab work on characterisation of PPKs. Design of Experiment for protein expression optimisation.

Jessica Burns

Cloning of PPK and Eut parts into submission and expression vectors. Lab work on Eut proteins for their characterisation.

Maciej Słowiński

Seeking sponsors and looking for collaborations. Building business model.

Ong Jun Yang

Wiki development and phosphate starvation operon modelling. Lab work. 3D animations.

Owen Julianto Jonathan

Every bit of human practices and making cost estimation from continuous culture modelling. Lab work. Wiki illustrations.

Theodore Glenaldo

Interlab study and lab work. Safety forms submission. Wiki illustrations.

INTERNAL RESOURCES

Research Institute

Manchester Institute of Biotechnology (MIB)


Project Advisors

Eriko Takano, Rainer Breitling

Advice on everything concerning the project.


Project Supervisors

William Finnigan, Marc Biarnes-Carrera, Ross Kent, Nicholas Weise, Jonathan Wilkes, Adam Amara

Advice on experimental design, troubleshooting, part assembly and characterisation, orders and deliveries, Design of Experiment, opportunities for outreach and articles.


Team Members

Adam Hannaford, Alice Fraser, Amber Hall, James Engleback, Jessica Burns, Maciej Słowiński, Ong Jun Yang, Owen Julianto Jonathan, Theodore Glenaldo


Trainings

Tanya Aspinall - Health & Safety induction

Sandra Taylor - Microscopy training

John Hughes - Ultracentrifugation training


Finance

Louise Barnes, Lisa Beattie


Human Practices

Dr. Andrew Balmer, Dr. Robert Meckin - on social implications of synthetic biology

Dr. Duncan Thomas - Manchester Institute of Innovation


Computational Modelling

Areti Tsigkinopoulou, Aliah Hawari

Advice on computational modelling of phosphate starvation operon, sources of scripts and papers on ensemble modelling.

EXTERNAL RESOURCES

Fundamentals

Martin Warren - Original paper on microcompartment-directed polyphosphate accumulation

Ashley Chessher - Eut plasmids and microscopy image samples

Inspiring previous work by HKU iGEM 2013, Dundee iGEM 2011, York iGEM 2015


Human Practices

Professor Issy Caffoor - Ex-Innovation Manager at Yorkshire Water

Jonathan Abra - Knowledge Transfer Network

Dr. Ben Reeve - CustoMem

Dr. Benjamin Tam - Isle Utilities

Dr. David Tompkins and PhD student Katie Ward - Aqua Enviro

Sarah Lyons - Davyhulme Treatment Works

Dr. Rick Watson - University of Manchester Intellectual Property (UMIP)

Dr. Linda Kahl - BioBricks Foundation

Department of Environment, Food and Rural Affairs (DEFRA)


Suppliers/ Sponsors

New England Biolabs, Qiagen, Promega, IDT, BioCatNet, IBCarb, Snapgene, Mathworks, Agilent

The University of Manchester, Manchester Metropolitan University


Design of Experiment (DoE)

Dr Markus Gershater - Synthace Ltd


Software

CellProfiller: pipeline used in the paper "Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering" published in ACS Synthetic Biology

by Chuchu Zhang, Christopher Jakobson, Marilyn Slininger Lee and Danielle Tullman-Ercek

THANKS FOR MAKING THIS PROJECT POSSIBLE!