Difference between revisions of "Team:SUSTech Shenzhen/Hardware"
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| − | Multiple devices of optics are designed and created for the various requirement of experiments. All devices | + | Multiple devices of optics are designed and created for the various requirement of experiments. All devices attempts to modulate the spatio-temporal pattern in an '''elegant''' and '''effective''' way. Just let us start to play with light. |
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| − | {{ SUSTech_Image | filename=T--SUSTech_Shenzhen--lampmovent.gif| caption= | + | {{ SUSTech_Image | filename=T--SUSTech_Shenzhen--lampmovent.gif| caption= Demo}} |
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== Projector Light Source == | == Projector Light Source == | ||
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We try develop a more challenged and hackable open source software suit called ''ColorMapping'' to track and activate multi ''<i>C. elegans</i>s'' or cell independently in one eye-filed. User can modify multi color, intensity, time, locations of light alternately in GUI. ''ColorMapping'' can be found in [https://github.com/JiangXL/ColorMapping GitHub], which still is developing. ''ColorMapping'' contains camera part, projector part, user&calculation part. More detain can be found in GitHub Document and PDF[]. | We try develop a more challenged and hackable open source software suit called ''ColorMapping'' to track and activate multi ''<i>C. elegans</i>s'' or cell independently in one eye-filed. User can modify multi color, intensity, time, locations of light alternately in GUI. ''ColorMapping'' can be found in [https://github.com/JiangXL/ColorMapping GitHub], which still is developing. ''ColorMapping'' contains camera part, projector part, user&calculation part. More detain can be found in GitHub Document and PDF[]. | ||
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| + | == Arduino Modulate Mercury Lamp == | ||
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| + | A simple and effective device to output pulse of certain wavelength of light. On time and off time of pulse is custom by Arduino. Wavelength of light is changed by replacing filter before beam expander. | ||
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| + | {{SUSTech_Image_Center_fill-width | filename=T--SUSTech_Shenzhen--DSCF2143.jpg |width=1000px| caption='''Overview of Arduino modulate Mercury lamp'''(A) Arduino transfer the pulse command to servo. (B)The interview of Mercury Lamp.The servo fix at the original bottom. (C) The beam expander connect to stereoscope}} | ||
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Revision as of 09:21, 1 November 2017
Microfluidics
A function to research C. elegans's neuron activity and behavioral response
Pump and microscope
A platform to use microfluidics
Projector
A custom light source to emit the blue light and red light
Microscope and projector
Play with light in spatio-temporal
Contents
Microfluidics
In our experiment, we want to research the neuron activity and behavioral response of Caenorhabditis elegans under a light stimulus of specific wavelength. Thus, we need to choose an appropriate, clear, efficient and convenient platform to study a group of worms as well as an individual one.
Microfluidics has a very tiny channel, which is the best to match with the size of C. elegans. There is no damaging for worms in Microfluidics. We design three parts of microfluidic chips the Selection Chip to choose appropriate sizes of worms, the Gaussian Plate to prove its olfactory receptor neuron pairs are not affected, and the Immobilization Plate to research the response of individual behavior and neuron activity. (Fig.1)
Light Modulator
Multiple devices of optics are designed and created for the various requirement of experiments. All devices attempts to modulate the spatio-temporal pattern in an elegant and effective way. Just let us start to play with light.
Projector Light Source
Here is a more fantastic and powerful tool with a LCD Projector we design.
Basic mechanical and optics
We need 395nm light to activate Calcium indicator protein GEM-GECO by Lumencor LED Illuminator. Then CoChR and Chrimson are activated by blue light and red light from LCD projector. LCD projector and LED Illuminator are merged by a double LH Adapter contained a semi-transparent mirror. Double LH Adapter connect to entrance of light in microscope. So we can use these two light source in the same time.
Protein are sensitive to the wavelength of light, it necessary to purify light of the projector. We buy and replace with new filter Chroma ET480/20X and Chroma ET630/20X, both are fixed inside projector. Di-mirror 89402bs and emission filter 89402m are been installed in Microscope filter wheel.
Control Software
Software is most flexible part. A very easy knack is to use slide(Demo Slide), such as LibreOffice(Test on 5.4.2.2.0+ in Arch Linux) or Microsoft Office. The image and time pattern is stetted in slide, including color, intensity, pulse time etc.
We try develop a more challenged and hackable open source software suit called ColorMapping to track and activate multi C. eleganss or cell independently in one eye-filed. User can modify multi color, intensity, time, locations of light alternately in GUI. ColorMapping can be found in GitHub, which still is developing. ColorMapping contains camera part, projector part, user&calculation part. More detain can be found in GitHub Document and PDF[].
Arduino Modulate Mercury Lamp
A simple and effective device to output pulse of certain wavelength of light. On time and off time of pulse is custom by Arduino. Wavelength of light is changed by replacing filter before beam expander.
